Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00085

Experiment: Carnitine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00075 and AO356_00080 are separated by 85 nucleotidesAO356_00080 and AO356_00085 are separated by 14 nucleotidesAO356_00085 and AO356_00090 overlap by 4 nucleotidesAO356_00090 and AO356_00095 overlap by 4 nucleotides AO356_00075: AO356_00075 - cobyrinic acid a,c-diamide synthase, at 15,122 to 15,964 _00075 AO356_00080: AO356_00080 - hypothetical protein, at 16,050 to 16,259 _00080 AO356_00085: AO356_00085 - chromosome partitioning protein ParB, at 16,274 to 17,845 _00085 AO356_00090: AO356_00090 - hypothetical protein, at 17,842 to 18,390 _00090 AO356_00095: AO356_00095 - hypothetical protein, at 18,387 to 19,574 _00095 Position (kb) 16 17 18Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 15.337 kb on - strand, within AO356_00075at 15.337 kb on - strand, within AO356_00075at 15.337 kb on - strand, within AO356_00075at 15.404 kb on - strand, within AO356_00075at 15.411 kb on + strand, within AO356_00075at 15.411 kb on + strand, within AO356_00075at 15.411 kb on + strand, within AO356_00075at 15.412 kb on - strand, within AO356_00075at 15.412 kb on - strand, within AO356_00075at 15.414 kb on + strand, within AO356_00075at 15.414 kb on + strand, within AO356_00075at 15.415 kb on - strand, within AO356_00075at 15.415 kb on - strand, within AO356_00075at 15.415 kb on - strand, within AO356_00075at 15.480 kb on + strand, within AO356_00075at 15.481 kb on - strand, within AO356_00075at 15.481 kb on - strand, within AO356_00075at 15.481 kb on - strand, within AO356_00075at 15.481 kb on - strand, within AO356_00075at 15.481 kb on - strand, within AO356_00075at 15.508 kb on + strand, within AO356_00075at 15.508 kb on + strand, within AO356_00075at 15.509 kb on - strand, within AO356_00075at 15.562 kb on + strand, within AO356_00075at 15.562 kb on + strand, within AO356_00075at 15.748 kb on + strand, within AO356_00075at 15.748 kb on + strand, within AO356_00075at 15.749 kb on - strand, within AO356_00075at 15.749 kb on - strand, within AO356_00075at 15.749 kb on - strand, within AO356_00075at 15.766 kb on - strand, within AO356_00075at 15.766 kb on - strand, within AO356_00075at 15.775 kb on - strand, within AO356_00075at 15.775 kb on - strand, within AO356_00075at 15.775 kb on - strand, within AO356_00075at 15.775 kb on - strand, within AO356_00075at 15.795 kb on - strand, within AO356_00075at 15.935 kb on - strandat 15.983 kb on - strandat 15.983 kb on - strandat 15.983 kb on - strandat 16.044 kb on - strandat 16.107 kb on - strand, within AO356_00080at 16.116 kb on + strand, within AO356_00080at 16.119 kb on + strand, within AO356_00080at 16.119 kb on + strand, within AO356_00080at 16.119 kb on + strand, within AO356_00080at 16.120 kb on - strand, within AO356_00080at 16.120 kb on - strand, within AO356_00080at 16.120 kb on - strand, within AO356_00080at 16.120 kb on - strand, within AO356_00080at 16.120 kb on - strand, within AO356_00080at 16.188 kb on + strand, within AO356_00080at 16.373 kb on - strandat 16.378 kb on + strandat 16.409 kb on + strandat 16.446 kb on - strand, within AO356_00085at 16.523 kb on + strand, within AO356_00085at 16.524 kb on - strand, within AO356_00085at 16.546 kb on + strand, within AO356_00085at 16.547 kb on - strand, within AO356_00085at 16.549 kb on + strand, within AO356_00085at 16.550 kb on - strand, within AO356_00085at 16.890 kb on + strand, within AO356_00085at 16.894 kb on + strand, within AO356_00085at 16.894 kb on + strand, within AO356_00085at 16.895 kb on - strand, within AO356_00085at 17.117 kb on - strand, within AO356_00085at 17.236 kb on + strand, within AO356_00085at 17.236 kb on + strand, within AO356_00085at 17.237 kb on - strand, within AO356_00085at 17.237 kb on - strand, within AO356_00085at 17.320 kb on + strand, within AO356_00085at 17.448 kb on + strand, within AO356_00085at 17.448 kb on + strand, within AO356_00085at 17.449 kb on - strand, within AO356_00085at 17.449 kb on - strand, within AO356_00085at 17.452 kb on + strand, within AO356_00085at 17.453 kb on - strand, within AO356_00085at 17.453 kb on - strand, within AO356_00085at 17.483 kb on + strand, within AO356_00085at 17.484 kb on - strand, within AO356_00085at 17.484 kb on - strand, within AO356_00085at 17.589 kb on + strand, within AO356_00085at 17.589 kb on + strand, within AO356_00085at 17.590 kb on - strand, within AO356_00085at 17.590 kb on - strand, within AO356_00085at 17.650 kb on - strand, within AO356_00085at 17.676 kb on + strand, within AO356_00085at 17.676 kb on + strand, within AO356_00085at 17.677 kb on - strand, within AO356_00085at 17.677 kb on - strand, within AO356_00085at 17.677 kb on - strand, within AO356_00085at 17.680 kb on - strand, within AO356_00085at 17.688 kb on - strandat 17.688 kb on - strandat 17.688 kb on - strandat 17.688 kb on - strandat 17.724 kb on + strandat 17.724 kb on + strandat 17.724 kb on + strandat 17.724 kb on + strandat 17.724 kb on + strandat 17.724 kb on + strandat 17.773 kb on + strandat 17.774 kb on - strandat 17.775 kb on + strandat 17.775 kb on + strandat 17.776 kb on - strandat 17.776 kb on - strandat 17.776 kb on - strandat 17.776 kb on - strandat 17.776 kb on - strandat 17.956 kb on + strand, within AO356_00090at 17.956 kb on + strand, within AO356_00090at 17.956 kb on + strand, within AO356_00090at 17.957 kb on - strand, within AO356_00090at 17.957 kb on - strand, within AO356_00090at 17.957 kb on - strand, within AO356_00090at 17.957 kb on - strand, within AO356_00090at 17.957 kb on - strand, within AO356_00090at 17.957 kb on - strand, within AO356_00090at 18.129 kb on + strand, within AO356_00090at 18.129 kb on + strand, within AO356_00090at 18.139 kb on + strand, within AO356_00090at 18.139 kb on + strand, within AO356_00090at 18.139 kb on + strand, within AO356_00090at 18.139 kb on + strand, within AO356_00090at 18.140 kb on - strand, within AO356_00090at 18.140 kb on - strand, within AO356_00090at 18.140 kb on - strand, within AO356_00090at 18.140 kb on - strand, within AO356_00090at 18.140 kb on - strand, within AO356_00090at 18.140 kb on - strand, within AO356_00090at 18.140 kb on - strand, within AO356_00090at 18.197 kb on + strand, within AO356_00090at 18.198 kb on - strand, within AO356_00090at 18.228 kb on - strand, within AO356_00090at 18.272 kb on + strand, within AO356_00090at 18.272 kb on + strand, within AO356_00090at 18.272 kb on + strand, within AO356_00090at 18.373 kb on + strandat 18.374 kb on - strandat 18.374 kb on - strandat 18.499 kb on + strandat 18.635 kb on + strand, within AO356_00095at 18.635 kb on + strand, within AO356_00095at 18.635 kb on + strand, within AO356_00095at 18.635 kb on + strand, within AO356_00095at 18.636 kb on - strand, within AO356_00095at 18.636 kb on - strand, within AO356_00095at 18.645 kb on + strand, within AO356_00095at 18.663 kb on + strand, within AO356_00095at 18.663 kb on + strand, within AO356_00095at 18.790 kb on + strand, within AO356_00095at 18.790 kb on + strand, within AO356_00095at 18.804 kb on + strand, within AO356_00095at 18.804 kb on + strand, within AO356_00095at 18.804 kb on + strand, within AO356_00095at 18.805 kb on - strand, within AO356_00095at 18.805 kb on - strand, within AO356_00095

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
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15,337 - AO356_00075 0.26 +0.7
15,337 - AO356_00075 0.26 -0.6
15,337 - AO356_00075 0.26 +0.0
15,404 - AO356_00075 0.33 -1.3
15,411 + AO356_00075 0.34 -0.6
15,411 + AO356_00075 0.34 +0.3
15,411 + AO356_00075 0.34 -0.4
15,412 - AO356_00075 0.34 +0.6
15,412 - AO356_00075 0.34 +0.1
15,414 + AO356_00075 0.35 +0.7
15,414 + AO356_00075 0.35 +0.3
15,415 - AO356_00075 0.35 -0.3
15,415 - AO356_00075 0.35 +0.3
15,415 - AO356_00075 0.35 +0.5
15,480 + AO356_00075 0.42 +0.3
15,481 - AO356_00075 0.43 -0.5
15,481 - AO356_00075 0.43 -0.1
15,481 - AO356_00075 0.43 +0.7
15,481 - AO356_00075 0.43 -1.4
15,481 - AO356_00075 0.43 +0.3
15,508 + AO356_00075 0.46 +0.9
15,508 + AO356_00075 0.46 +1.3
15,509 - AO356_00075 0.46 -0.0
15,562 + AO356_00075 0.52 +0.3
15,562 + AO356_00075 0.52 +0.4
15,748 + AO356_00075 0.74 -0.1
15,748 + AO356_00075 0.74 +0.1
15,749 - AO356_00075 0.74 +0.8
15,749 - AO356_00075 0.74 +0.3
15,749 - AO356_00075 0.74 -0.7
15,766 - AO356_00075 0.76 +1.3
15,766 - AO356_00075 0.76 +0.6
15,775 - AO356_00075 0.77 -0.0
15,775 - AO356_00075 0.77 -0.3
15,775 - AO356_00075 0.77 -0.3
15,775 - AO356_00075 0.77 +0.1
15,795 - AO356_00075 0.80 +2.1
15,935 - -0.7
15,983 - -0.6
15,983 - -0.0
15,983 - +0.6
16,044 - -0.9
16,107 - AO356_00080 0.27 -0.6
16,116 + AO356_00080 0.31 -0.3
16,119 + AO356_00080 0.33 -0.1
16,119 + AO356_00080 0.33 +0.1
16,119 + AO356_00080 0.33 +0.3
16,120 - AO356_00080 0.33 +0.6
16,120 - AO356_00080 0.33 -0.2
16,120 - AO356_00080 0.33 -0.3
16,120 - AO356_00080 0.33 -0.3
16,120 - AO356_00080 0.33 -0.2
16,188 + AO356_00080 0.66 -0.2
16,373 - +0.5
16,378 + +0.3
16,409 + +0.7
16,446 - AO356_00085 0.11 +0.3
16,523 + AO356_00085 0.16 +0.7
16,524 - AO356_00085 0.16 +0.6
16,546 + AO356_00085 0.17 -2.7
16,547 - AO356_00085 0.17 +0.4
16,549 + AO356_00085 0.17 +0.7
16,550 - AO356_00085 0.18 +0.7
16,890 + AO356_00085 0.39 -0.1
16,894 + AO356_00085 0.39 -0.0
16,894 + AO356_00085 0.39 -0.2
16,895 - AO356_00085 0.40 -2.1
17,117 - AO356_00085 0.54 +0.4
17,236 + AO356_00085 0.61 +1.1
17,236 + AO356_00085 0.61 +0.5
17,237 - AO356_00085 0.61 +0.1
17,237 - AO356_00085 0.61 -0.4
17,320 + AO356_00085 0.67 +0.3
17,448 + AO356_00085 0.75 +0.9
17,448 + AO356_00085 0.75 +0.4
17,449 - AO356_00085 0.75 +1.3
17,449 - AO356_00085 0.75 +0.7
17,452 + AO356_00085 0.75 +0.3
17,453 - AO356_00085 0.75 -0.1
17,453 - AO356_00085 0.75 -0.9
17,483 + AO356_00085 0.77 +0.5
17,484 - AO356_00085 0.77 +0.6
17,484 - AO356_00085 0.77 +0.1
17,589 + AO356_00085 0.84 +0.7
17,589 + AO356_00085 0.84 +0.3
17,590 - AO356_00085 0.84 -0.5
17,590 - AO356_00085 0.84 +0.6
17,650 - AO356_00085 0.88 +0.4
17,676 + AO356_00085 0.89 +1.3
17,676 + AO356_00085 0.89 +0.2
17,677 - AO356_00085 0.89 +2.3
17,677 - AO356_00085 0.89 -1.7
17,677 - AO356_00085 0.89 +1.7
17,680 - AO356_00085 0.89 -0.2
17,688 - -0.1
17,688 - +0.8
17,688 - +1.0
17,688 - -0.6
17,724 + -0.3
17,724 + -0.1
17,724 + +0.5
17,724 + +0.0
17,724 + -1.1
17,724 + +0.8
17,773 + +0.0
17,774 - -0.1
17,775 + +1.0
17,775 + -0.1
17,776 - +0.1
17,776 - -1.1
17,776 - +0.9
17,776 - +0.3
17,776 - +0.7
17,956 + AO356_00090 0.21 -1.8
17,956 + AO356_00090 0.21 -0.3
17,956 + AO356_00090 0.21 +0.2
17,957 - AO356_00090 0.21 -0.5
17,957 - AO356_00090 0.21 +1.1
17,957 - AO356_00090 0.21 -0.3
17,957 - AO356_00090 0.21 -1.1
17,957 - AO356_00090 0.21 -0.4
17,957 - AO356_00090 0.21 -1.1
18,129 + AO356_00090 0.52 +0.0
18,129 + AO356_00090 0.52 -0.6
18,139 + AO356_00090 0.54 +0.7
18,139 + AO356_00090 0.54 +0.1
18,139 + AO356_00090 0.54 -0.4
18,139 + AO356_00090 0.54 -0.3
18,140 - AO356_00090 0.54 +1.4
18,140 - AO356_00090 0.54 +0.0
18,140 - AO356_00090 0.54 -0.7
18,140 - AO356_00090 0.54 +0.7
18,140 - AO356_00090 0.54 +0.3
18,140 - AO356_00090 0.54 -0.3
18,140 - AO356_00090 0.54 +0.7
18,197 + AO356_00090 0.65 -1.3
18,198 - AO356_00090 0.65 -0.5
18,228 - AO356_00090 0.70 -0.2
18,272 + AO356_00090 0.78 -0.3
18,272 + AO356_00090 0.78 -2.8
18,272 + AO356_00090 0.78 +0.5
18,373 + +0.4
18,374 - +0.3
18,374 - +0.4
18,499 + +0.8
18,635 + AO356_00095 0.21 -0.6
18,635 + AO356_00095 0.21 +0.5
18,635 + AO356_00095 0.21 -0.1
18,635 + AO356_00095 0.21 -0.7
18,636 - AO356_00095 0.21 +0.3
18,636 - AO356_00095 0.21 +0.6
18,645 + AO356_00095 0.22 +0.4
18,663 + AO356_00095 0.23 +1.7
18,663 + AO356_00095 0.23 -0.1
18,790 + AO356_00095 0.34 +0.1
18,790 + AO356_00095 0.34 -0.0
18,804 + AO356_00095 0.35 -0.2
18,804 + AO356_00095 0.35 +0.2
18,804 + AO356_00095 0.35 +0.5
18,805 - AO356_00095 0.35 +0.1
18,805 - AO356_00095 0.35 +0.4

Or see this region's nucleotide sequence