Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3417 and Dshi_3418 are separated by 10 nucleotides Dshi_3418 and Dshi_3419 are separated by 74 nucleotides
Dshi_3417: Dshi_3417 - hypothetical protein (RefSeq), at 3,594,961 to 3,596,388
_3417
Dshi_3418: Dshi_3418 - HemY domain protein (RefSeq), at 3,596,399 to 3,597,907
_3418
Dshi_3419: Dshi_3419 - Amidase (RefSeq), at 3,597,982 to 3,599,307
_3419
Position (kb)
3596
3597
3598 Strain fitness (log2 ratio)
-2
-1
0
1 at 3595.432 kb on + strand, within Dshi_3417 at 3595.440 kb on - strand, within Dshi_3417 at 3595.524 kb on + strand, within Dshi_3417 at 3595.564 kb on + strand, within Dshi_3417 at 3595.564 kb on - strand, within Dshi_3417 at 3595.909 kb on + strand, within Dshi_3417 at 3596.020 kb on + strand, within Dshi_3417 at 3596.117 kb on + strand, within Dshi_3417 at 3596.182 kb on - strand, within Dshi_3417 at 3596.237 kb on + strand, within Dshi_3417 at 3596.373 kb on + strand at 3596.832 kb on + strand, within Dshi_3418 at 3596.884 kb on + strand, within Dshi_3418 at 3597.273 kb on + strand, within Dshi_3418 at 3597.741 kb on - strand, within Dshi_3418 at 3597.743 kb on + strand, within Dshi_3418 at 3597.779 kb on + strand at 3597.834 kb on + strand at 3597.867 kb on + strand at 3597.924 kb on + strand at 3597.924 kb on + strand at 3597.951 kb on + strand at 3598.021 kb on + strand at 3598.046 kb on - strand at 3598.272 kb on + strand, within Dshi_3419 at 3598.333 kb on + strand, within Dshi_3419 at 3598.341 kb on + strand, within Dshi_3419 at 3598.375 kb on - strand, within Dshi_3419 at 3598.420 kb on - strand, within Dshi_3419 at 3598.471 kb on - strand, within Dshi_3419 at 3598.581 kb on + strand, within Dshi_3419 at 3598.625 kb on + strand, within Dshi_3419 at 3598.630 kb on + strand, within Dshi_3419 at 3598.671 kb on + strand, within Dshi_3419 at 3598.679 kb on - strand, within Dshi_3419 at 3598.688 kb on + strand, within Dshi_3419 at 3598.688 kb on + strand, within Dshi_3419
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 3,595,432 + Dshi_3417 0.33 -0.6 3,595,440 - Dshi_3417 0.34 -2.3 3,595,524 + Dshi_3417 0.39 +0.6 3,595,564 + Dshi_3417 0.42 -1.6 3,595,564 - Dshi_3417 0.42 -0.2 3,595,909 + Dshi_3417 0.66 -2.1 3,596,020 + Dshi_3417 0.74 -2.3 3,596,117 + Dshi_3417 0.81 -1.6 3,596,182 - Dshi_3417 0.86 -2.0 3,596,237 + Dshi_3417 0.89 -0.6 3,596,373 + +0.5 3,596,832 + Dshi_3418 0.29 -1.7 3,596,884 + Dshi_3418 0.32 -1.3 3,597,273 + Dshi_3418 0.58 -1.0 3,597,741 - Dshi_3418 0.89 -1.3 3,597,743 + Dshi_3418 0.89 -1.5 3,597,779 + -0.5 3,597,834 + -0.3 3,597,867 + -0.7 3,597,924 + +0.5 3,597,924 + +0.2 3,597,951 + -0.3 3,598,021 + -0.2 3,598,046 - -0.3 3,598,272 + Dshi_3419 0.22 -1.0 3,598,333 + Dshi_3419 0.26 +0.6 3,598,341 + Dshi_3419 0.27 -0.7 3,598,375 - Dshi_3419 0.30 -1.5 3,598,420 - Dshi_3419 0.33 +0.3 3,598,471 - Dshi_3419 0.37 -1.6 3,598,581 + Dshi_3419 0.45 -1.2 3,598,625 + Dshi_3419 0.48 +1.0 3,598,630 + Dshi_3419 0.49 -2.1 3,598,671 + Dshi_3419 0.52 -0.5 3,598,679 - Dshi_3419 0.53 -0.3 3,598,688 + Dshi_3419 0.53 -0.1 3,598,688 + Dshi_3419 0.53 +0.2
Or see this region's nucleotide sequence