Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2956

Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2955 and Dshi_2956 are separated by 88 nucleotidesDshi_2956 and Dshi_2957 are separated by 226 nucleotides Dshi_2955: Dshi_2955 - histidyl-tRNA synthetase (RefSeq), at 3,115,954 to 3,117,447 _2955 Dshi_2956: Dshi_2956 - SlyX family protein (RefSeq), at 3,117,536 to 3,117,745 _2956 Dshi_2957: Dshi_2957 - DNA polymerase III, alpha subunit (RefSeq), at 3,117,972 to 3,121,466 _2957 Position (kb) 3117 3118Strain fitness (log2 ratio) -1 0 1at 3117.532 kb on + strandat 3117.542 kb on - strandat 3117.542 kb on - strandat 3117.791 kb on - strandat 3117.824 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml
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3,117,532 + +1.1
3,117,542 - +0.0
3,117,542 - +0.3
3,117,791 - -0.2
3,117,824 - +0.2

Or see this region's nucleotide sequence