Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2703

Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2702 and Dshi_2703 are separated by 73 nucleotidesDshi_2703 and Dshi_2704 are separated by 160 nucleotides Dshi_2702: Dshi_2702 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 2,862,502 to 2,863,494 _2702 Dshi_2703: Dshi_2703 - hypothetical protein (RefSeq), at 2,863,568 to 2,863,975 _2703 Dshi_2704: Dshi_2704 - porphobilinogen deaminase (RefSeq), at 2,864,136 to 2,865,179 _2704 Position (kb) 2863 2864Strain fitness (log2 ratio) -1 0 1 2at 2862.576 kb on + strandat 2862.580 kb on - strandat 2862.632 kb on - strand, within Dshi_2702at 2862.704 kb on - strand, within Dshi_2702at 2862.749 kb on + strand, within Dshi_2702at 2862.875 kb on - strand, within Dshi_2702at 2862.934 kb on - strand, within Dshi_2702at 2863.044 kb on - strand, within Dshi_2702at 2863.601 kb on + strandat 2863.611 kb on - strand, within Dshi_2703at 2863.746 kb on - strand, within Dshi_2703at 2863.910 kb on + strand, within Dshi_2703at 2863.968 kb on - strandat 2863.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml
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2,862,576 + -0.2
2,862,580 - -0.2
2,862,632 - Dshi_2702 0.13 +0.2
2,862,704 - Dshi_2702 0.20 -0.6
2,862,749 + Dshi_2702 0.25 +0.4
2,862,875 - Dshi_2702 0.38 +0.2
2,862,934 - Dshi_2702 0.44 -0.5
2,863,044 - Dshi_2702 0.55 +0.3
2,863,601 + -0.3
2,863,611 - Dshi_2703 0.11 +0.5
2,863,746 - Dshi_2703 0.44 +2.3
2,863,910 + Dshi_2703 0.84 +0.3
2,863,968 - +0.3
2,863,998 + +0.5

Or see this region's nucleotide sequence