Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1452
Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Benzalkonium Chloride 0.0005 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,510,096 | + | Dshi_1450 | 0.81 | +0.4 | |
1,510,288 | + | +0.3 | |||
1,510,474 | + | Dshi_1451 | 0.19 | +1.2 | |
1,510,518 | + | Dshi_1451 | 0.25 | -0.3 | |
1,510,593 | - | Dshi_1451 | 0.35 | +0.3 | |
1,510,594 | - | Dshi_1451 | 0.35 | +0.5 | |
1,510,598 | + | Dshi_1451 | 0.36 | -0.7 | |
1,510,623 | + | Dshi_1451 | 0.39 | -0.6 | |
1,510,631 | - | Dshi_1451 | 0.40 | -0.8 | |
1,510,887 | + | Dshi_1451 | 0.74 | -0.2 | |
1,511,149 | + | +0.3 | |||
1,511,170 | - | Dshi_1452 | 0.11 | -1.0 | |
1,511,317 | - | Dshi_1452 | 0.28 | -0.8 | |
1,511,513 | + | Dshi_1452 | 0.50 | +0.4 | |
1,511,605 | + | Dshi_1452 | 0.61 | -0.6 | |
1,511,806 | - | Dshi_1452 | 0.84 | -0.7 | |
1,511,831 | - | Dshi_1452 | 0.87 | -0.1 | |
1,511,891 | + | +0.6 | |||
1,511,937 | + | +0.1 | |||
1,511,955 | - | -0.3 | |||
1,512,149 | + | Dshi_1453 | 0.19 | -0.3 | |
1,512,250 | - | Dshi_1453 | 0.29 | -0.5 | |
1,512,393 | + | Dshi_1453 | 0.44 | -2.1 | |
1,512,456 | - | Dshi_1453 | 0.50 | +0.6 | |
1,512,607 | - | Dshi_1453 | 0.66 | -0.4 | |
1,512,679 | - | Dshi_1453 | 0.73 | -1.9 | |
1,512,722 | - | Dshi_1453 | 0.77 | -0.5 | |
1,512,882 | + | +0.6 |
Or see this region's nucleotide sequence