Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1352

Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1350 and Dshi_1351 are separated by 149 nucleotidesDshi_1351 and Dshi_1352 overlap by 4 nucleotidesDshi_1352 and Dshi_1353 are separated by 651 nucleotides Dshi_1350: Dshi_1350 - Nucleoside-diphosphate kinase (RefSeq), at 1,402,713 to 1,403,135 _1350 Dshi_1351: Dshi_1351 - hypothetical protein (RefSeq), at 1,403,285 to 1,403,677 _1351 Dshi_1352: Dshi_1352 - TfoX domain protein (RefSeq), at 1,403,674 to 1,404,003 _1352 Dshi_1353: Dshi_1353 - extracellular solute-binding protein family 1 (RefSeq), at 1,404,655 to 1,405,959 _1353 Position (kb) 1403 1404 1405Strain fitness (log2 ratio) -1 0 1at 1403.282 kb on + strandat 1403.485 kb on - strand, within Dshi_1351at 1403.553 kb on + strand, within Dshi_1351at 1403.755 kb on - strand, within Dshi_1352at 1403.755 kb on - strand, within Dshi_1352at 1403.937 kb on - strand, within Dshi_1352at 1404.089 kb on + strandat 1404.089 kb on + strandat 1404.101 kb on + strandat 1404.180 kb on + strandat 1404.188 kb on - strandat 1404.471 kb on - strandat 1404.480 kb on - strandat 1404.595 kb on + strandat 1404.711 kb on + strandat 1404.746 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml
remove
1,403,282 + +0.5
1,403,485 - Dshi_1351 0.51 -0.2
1,403,553 + Dshi_1351 0.68 -0.1
1,403,755 - Dshi_1352 0.25 +0.2
1,403,755 - Dshi_1352 0.25 -0.7
1,403,937 - Dshi_1352 0.80 +0.3
1,404,089 + -0.1
1,404,089 + -0.3
1,404,101 + -0.1
1,404,180 + -0.3
1,404,188 - -1.0
1,404,471 - +0.4
1,404,480 - +0.0
1,404,595 + +0.3
1,404,711 + -0.4
1,404,746 - +0.5

Or see this region's nucleotide sequence