Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1306 and Dshi_1307 are separated by 341 nucleotides Dshi_1307 and Dshi_1308 overlap by 10 nucleotides Dshi_1308 and Dshi_1309 are separated by 63 nucleotides Dshi_1309 and Dshi_1310 are separated by 4 nucleotides
Dshi_1306: Dshi_1306 - hypothetical protein (RefSeq), at 1,359,980 to 1,360,588
_1306
Dshi_1307: Dshi_1307 - NADH-ubiquinone/plastoquinone oxidoreductase chain 3 (RefSeq), at 1,360,930 to 1,361,295
_1307
Dshi_1308: Dshi_1308 - NADH-quinone oxidoreductase, B subunit (RefSeq), at 1,361,286 to 1,361,819
_1308
Dshi_1309: Dshi_1309 - NADH (or F420H2) dehydrogenase, subunit C (RefSeq), at 1,361,883 to 1,362,530
_1309
Dshi_1310: Dshi_1310 - hypothetical protein (RefSeq), at 1,362,535 to 1,363,413
_1310
Position (kb) 1361
1362 Strain fitness (log2 ratio) -1
0
1 at 1360.289 kb on + strand, within Dshi_1306 at 1360.308 kb on - strand, within Dshi_1306 at 1360.332 kb on - strand, within Dshi_1306 at 1360.489 kb on + strand, within Dshi_1306 at 1360.559 kb on - strand at 1360.562 kb on - strand at 1360.634 kb on - strand at 1360.653 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 1,360,289 + Dshi_1306 0.51 -0.0 1,360,308 - Dshi_1306 0.54 +0.0 1,360,332 - Dshi_1306 0.58 -0.5 1,360,489 + Dshi_1306 0.84 -0.4 1,360,559 - -0.0 1,360,562 - -0.2 1,360,634 - +0.1 1,360,653 - +0.2
Or see this region's nucleotide sequence