Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0810 and Dshi_0811 overlap by 20 nucleotides Dshi_0811 and Dshi_0812 are separated by 183 nucleotides Dshi_0812 and Dshi_0813 are separated by 54 nucleotides
Dshi_0810: Dshi_0810 - hypothetical protein (RefSeq), at 820,707 to 820,949
_0810
Dshi_0811: Dshi_0811 - hypothetical protein (RefSeq), at 820,930 to 821,163
_0811
Dshi_0812: Dshi_0812 - transcriptional regulator, TraR/DksA family (RefSeq), at 821,347 to 821,664
_0812
Dshi_0813: Dshi_0813 - hypothetical protein (RefSeq), at 821,719 to 821,967
_0813
Position (kb) 820
821 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 819.714 kb on + strand at 819.714 kb on + strand at 819.721 kb on + strand at 819.726 kb on - strand at 819.727 kb on + strand at 819.727 kb on + strand at 819.729 kb on - strand at 819.743 kb on - strand at 819.748 kb on - strand at 819.748 kb on - strand at 819.750 kb on + strand at 819.754 kb on - strand at 819.761 kb on + strand at 819.777 kb on + strand at 819.781 kb on + strand at 819.781 kb on + strand at 819.782 kb on + strand at 819.782 kb on + strand at 819.786 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on - strand at 819.789 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.818 kb on + strand at 819.819 kb on - strand at 819.836 kb on + strand at 819.836 kb on - strand at 819.839 kb on + strand at 819.839 kb on + strand at 819.845 kb on + strand at 819.847 kb on - strand at 819.847 kb on - strand at 819.863 kb on - strand at 819.863 kb on - strand at 819.873 kb on + strand at 819.873 kb on + strand at 819.874 kb on + strand at 819.874 kb on + strand at 819.881 kb on - strand at 819.881 kb on - strand at 819.882 kb on - strand at 819.882 kb on - strand at 819.886 kb on - strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.896 kb on + strand at 819.900 kb on + strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.905 kb on + strand at 819.905 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.912 kb on + strand at 819.913 kb on - strand at 819.913 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.920 kb on - strand at 819.920 kb on - strand at 819.934 kb on - strand at 819.935 kb on + strand at 819.940 kb on + strand at 819.960 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.988 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.991 kb on + strand at 819.999 kb on - strand at 820.027 kb on - strand at 820.027 kb on - strand at 820.029 kb on - strand at 820.038 kb on + strand at 820.090 kb on - strand at 820.097 kb on + strand at 820.098 kb on + strand at 820.098 kb on + strand at 820.105 kb on - strand at 820.108 kb on + strand at 820.108 kb on + strand at 820.110 kb on + strand at 820.116 kb on - strand at 820.130 kb on - strand at 820.170 kb on + strand at 820.170 kb on - strand at 820.200 kb on - strand at 820.209 kb on + strand at 820.217 kb on - strand at 820.219 kb on + strand at 820.219 kb on - strand at 820.227 kb on - strand at 820.240 kb on + strand at 820.248 kb on - strand at 820.258 kb on - strand at 820.266 kb on + strand at 820.266 kb on + strand at 820.274 kb on - strand at 820.289 kb on - strand at 820.291 kb on + strand at 820.299 kb on - strand at 820.333 kb on - strand at 820.346 kb on + strand at 820.359 kb on + strand at 820.383 kb on + strand at 820.397 kb on - strand at 820.425 kb on + strand at 820.431 kb on + strand at 820.433 kb on - strand at 820.433 kb on - strand at 820.433 kb on - strand at 820.433 kb on - strand at 820.435 kb on - strand at 820.436 kb on + strand at 820.444 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.453 kb on + strand at 820.460 kb on + strand at 820.461 kb on - strand at 820.461 kb on - strand at 820.461 kb on - strand at 820.461 kb on - strand at 820.461 kb on - strand at 820.463 kb on + strand at 820.464 kb on + strand at 820.464 kb on + strand at 820.464 kb on + strand at 820.464 kb on + strand at 820.464 kb on + strand at 820.464 kb on + strand at 820.471 kb on + strand at 820.472 kb on - strand at 820.474 kb on - strand at 820.479 kb on - strand at 820.479 kb on - strand at 820.483 kb on + strand at 820.483 kb on + strand at 820.483 kb on + strand at 820.483 kb on + strand at 820.483 kb on + strand at 820.484 kb on + strand at 820.488 kb on + strand at 820.488 kb on + strand at 820.491 kb on - strand at 820.491 kb on - strand at 820.491 kb on - strand at 820.524 kb on + strand at 820.526 kb on + strand at 820.527 kb on - strand at 820.533 kb on - strand at 820.540 kb on - strand at 820.540 kb on - strand at 820.546 kb on - strand at 820.578 kb on + strand at 820.583 kb on + strand at 820.588 kb on + strand at 820.588 kb on + strand at 820.591 kb on - strand at 820.591 kb on - strand at 820.591 kb on - strand at 820.596 kb on - strand at 820.601 kb on - strand at 820.608 kb on - strand at 820.613 kb on - strand at 820.627 kb on - strand at 820.630 kb on + strand at 820.654 kb on + strand at 820.656 kb on - strand at 820.659 kb on + strand at 820.668 kb on + strand at 820.676 kb on - strand at 820.697 kb on + strand at 820.726 kb on - strand at 820.753 kb on - strand, within Dshi_0810 at 820.779 kb on + strand, within Dshi_0810 at 820.779 kb on + strand, within Dshi_0810 at 820.787 kb on - strand, within Dshi_0810 at 820.827 kb on + strand, within Dshi_0810 at 820.849 kb on + strand, within Dshi_0810 at 821.179 kb on + strand at 821.310 kb on - strand at 821.323 kb on - strand at 821.357 kb on - strand at 821.415 kb on + strand, within Dshi_0812 at 821.461 kb on - strand, within Dshi_0812 at 821.488 kb on - strand, within Dshi_0812 at 821.529 kb on - strand, within Dshi_0812 at 821.613 kb on + strand, within Dshi_0812 at 821.621 kb on - strand, within Dshi_0812 at 821.637 kb on + strand at 821.709 kb on - strand at 821.812 kb on + strand, within Dshi_0813 at 821.844 kb on - strand, within Dshi_0813 at 821.878 kb on - strand, within Dshi_0813 at 821.878 kb on - strand, within Dshi_0813 at 821.940 kb on + strand, within Dshi_0813
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 819,714 + +0.1 819,714 + -0.1 819,721 + +0.2 819,726 - +0.6 819,727 + -0.3 819,727 + +1.2 819,729 - -0.8 819,743 - +0.7 819,748 - +0.3 819,748 - -0.2 819,750 + -0.8 819,754 - +0.4 819,761 + +0.8 819,777 + +1.1 819,781 + -0.3 819,781 + -0.2 819,782 + -0.5 819,782 + -0.2 819,786 + +0.5 819,789 + +3.0 819,789 + -0.7 819,789 + -0.2 819,789 + +0.1 819,789 + -0.5 819,789 - +0.2 819,789 - -0.1 819,797 - +0.2 819,797 - +0.7 819,797 - +0.1 819,797 - -0.1 819,797 - -0.1 819,797 - +0.1 819,818 + -0.3 819,819 - -0.5 819,836 + -0.0 819,836 - +0.9 819,839 + -0.3 819,839 + -0.4 819,845 + +0.6 819,847 - -0.0 819,847 - +0.1 819,863 - +0.1 819,863 - -0.3 819,873 + +0.5 819,873 + +0.3 819,874 + +0.4 819,874 + +0.8 819,881 - +0.9 819,881 - +0.3 819,882 - -0.3 819,882 - -0.4 819,886 - +0.3 819,895 + +0.4 819,895 + -0.6 819,895 + -0.7 819,895 + +0.3 819,895 + +0.4 819,895 + -0.2 819,895 + +1.9 819,895 + +0.3 819,895 + -0.9 819,895 + +0.2 819,895 + -0.1 819,895 + +0.9 819,895 + -0.5 819,895 + -0.5 819,895 + +0.6 819,895 + -0.4 819,895 + +0.1 819,895 + +0.9 819,895 + -0.7 819,895 + -1.0 819,895 + -1.0 819,895 + -0.9 819,895 + -0.4 819,895 + +0.5 819,895 + +0.4 819,895 + -0.2 819,895 + -0.5 819,895 + -0.2 819,895 + +1.4 819,895 + -1.2 819,895 + +0.2 819,895 + +0.3 819,895 + -0.3 819,895 + -0.1 819,895 + -0.2 819,895 + +0.1 819,895 + +0.9 819,895 + +0.1 819,895 + -0.2 819,895 + -0.9 819,895 + -0.7 819,895 + -1.4 819,895 + +0.4 819,895 + +0.1 819,895 + -0.2 819,895 + -0.4 819,895 + -0.0 819,895 + -0.3 819,895 + +0.9 819,895 + -0.1 819,895 + -0.0 819,895 + -0.2 819,895 + -0.7 819,895 + -1.0 819,895 + +0.2 819,895 + -1.1 819,895 + +1.0 819,895 + +0.1 819,895 + +0.2 819,895 + -1.0 819,895 + -0.7 819,895 + -0.6 819,895 + +0.3 819,895 + +0.6 819,895 + -0.4 819,895 + +0.3 819,895 + +0.2 819,895 + +1.0 819,896 + +0.8 819,900 + -0.1 819,903 - -0.8 819,903 - +0.9 819,903 - +0.1 819,903 - -0.2 819,903 - -0.3 819,903 - -0.2 819,903 - +1.5 819,903 - +0.1 819,903 - +0.3 819,903 - -0.4 819,903 - +0.4 819,903 - +0.2 819,903 - +0.2 819,903 - -1.1 819,903 - -0.3 819,903 - +0.5 819,903 - +2.3 819,903 - -0.6 819,903 - +0.2 819,903 - -0.6 819,903 - -0.8 819,903 - -0.7 819,903 - -1.4 819,903 - -0.2 819,903 - -1.0 819,903 - +0.0 819,903 - +0.1 819,903 - -0.7 819,903 - -0.0 819,903 - +0.2 819,903 - -1.2 819,903 - +0.6 819,903 - -0.5 819,903 - +0.7 819,903 - +0.7 819,905 + +0.9 819,905 + -0.3 819,910 + +0.4 819,910 + +0.7 819,910 + +1.5 819,910 + +0.6 819,910 + -0.6 819,910 + +0.4 819,910 + -0.9 819,910 + -0.3 819,910 + +0.0 819,910 + +0.0 819,910 + -1.1 819,910 + -0.3 819,910 + +0.0 819,910 + +0.9 819,910 + -0.2 819,910 + -0.1 819,910 + -1.2 819,910 + +0.1 819,910 + +0.3 819,910 + +0.3 819,910 + -0.5 819,910 + -0.1 819,910 + -1.0 819,910 + -0.1 819,910 + -0.3 819,910 + -0.8 819,910 + -0.5 819,910 + +1.1 819,910 + -0.3 819,910 + +0.5 819,910 + -1.4 819,910 + -0.2 819,910 + +0.3 819,912 + -0.1 819,913 - -1.1 819,913 - +1.4 819,918 - -0.2 819,918 - +0.1 819,918 - -1.2 819,918 - -0.4 819,918 - -1.3 819,918 - +0.0 819,918 - -0.3 819,918 - +0.9 819,918 - -0.2 819,918 - +0.2 819,918 - +1.1 819,918 - +0.6 819,918 - +0.9 819,920 - +0.6 819,920 - +0.3 819,934 - -0.1 819,935 + +0.6 819,940 + +0.0 819,960 + -0.9 819,981 + -0.0 819,981 + +0.4 819,981 + -0.0 819,981 + -0.1 819,981 + +0.4 819,981 + -0.5 819,981 + -0.0 819,981 + -0.5 819,988 - -0.2 819,989 - -0.2 819,989 - -0.9 819,989 - -0.1 819,989 - -0.3 819,989 - -0.7 819,989 - +0.7 819,991 + -0.4 819,999 - +0.7 820,027 - -0.2 820,027 - +0.5 820,029 - -0.0 820,038 + -0.5 820,090 - -0.1 820,097 + +0.3 820,098 + -0.1 820,098 + +0.6 820,105 - -0.1 820,108 + +0.6 820,108 + +0.9 820,110 + +0.9 820,116 - +0.0 820,130 - -0.2 820,170 + +0.0 820,170 - +0.9 820,200 - -1.1 820,209 + +0.9 820,217 - -0.0 820,219 + -0.3 820,219 - -0.3 820,227 - -0.8 820,240 + +0.1 820,248 - +0.7 820,258 - -0.4 820,266 + +0.6 820,266 + -0.4 820,274 - -0.0 820,289 - +0.6 820,291 + -0.2 820,299 - +0.0 820,333 - +0.6 820,346 + -0.6 820,359 + -2.2 820,383 + -0.1 820,397 - +0.5 820,425 + -0.1 820,431 + +0.7 820,433 - +0.3 820,433 - +0.4 820,433 - +0.5 820,433 - -0.6 820,435 - +1.4 820,436 + -0.1 820,444 + -0.1 820,453 + +0.2 820,453 + +0.8 820,453 + -0.2 820,453 + +0.0 820,453 + -1.0 820,453 + -0.0 820,453 + -1.0 820,460 + +0.4 820,461 - +0.5 820,461 - -0.3 820,461 - +0.1 820,461 - -0.5 820,461 - +0.4 820,463 + +0.1 820,464 + +0.9 820,464 + +0.6 820,464 + +0.0 820,464 + -0.5 820,464 + -0.3 820,464 + -0.4 820,471 + +1.4 820,472 - +0.4 820,474 - +0.2 820,479 - -0.7 820,479 - -0.3 820,483 + +0.1 820,483 + -0.6 820,483 + -0.4 820,483 + -0.3 820,483 + +0.1 820,484 + -0.1 820,488 + -0.7 820,488 + -0.6 820,491 - -0.1 820,491 - -0.1 820,491 - -0.7 820,524 + -1.0 820,526 + +0.1 820,527 - +0.5 820,533 - +0.3 820,540 - +1.8 820,540 - -0.8 820,546 - +0.8 820,578 + +1.1 820,583 + +0.2 820,588 + +0.7 820,588 + +0.4 820,591 - +0.2 820,591 - -0.1 820,591 - -0.5 820,596 - +0.2 820,601 - +0.1 820,608 - +0.6 820,613 - -0.3 820,627 - -0.5 820,630 + +1.2 820,654 + -0.1 820,656 - +0.4 820,659 + +0.4 820,668 + -0.4 820,676 - +0.0 820,697 + +0.3 820,726 - +0.2 820,753 - Dshi_0810 0.19 +0.5 820,779 + Dshi_0810 0.30 -0.8 820,779 + Dshi_0810 0.30 +0.4 820,787 - Dshi_0810 0.33 +0.8 820,827 + Dshi_0810 0.49 -0.3 820,849 + Dshi_0810 0.58 +0.0 821,179 + +0.7 821,310 - -1.6 821,323 - +0.6 821,357 - -0.1 821,415 + Dshi_0812 0.21 +0.9 821,461 - Dshi_0812 0.36 -0.5 821,488 - Dshi_0812 0.44 +0.4 821,529 - Dshi_0812 0.57 -0.1 821,613 + Dshi_0812 0.84 +0.3 821,621 - Dshi_0812 0.86 +0.6 821,637 + -0.5 821,709 - -0.6 821,812 + Dshi_0813 0.37 +0.3 821,844 - Dshi_0813 0.50 -0.1 821,878 - Dshi_0813 0.64 +0.3 821,878 - Dshi_0813 0.64 -0.5 821,940 + Dshi_0813 0.89 -0.5
Or see this region's nucleotide sequence