Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0405 and Dshi_0406 overlap by 70 nucleotides Dshi_0406 and Dshi_0407 are separated by 262 nucleotides Dshi_0407 and Dshi_0408 are separated by 10 nucleotides
Dshi_0405: Dshi_0405 - hypothetical protein (RefSeq), at 399,227 to 400,612
_0405
Dshi_0406: Dshi_0406 - hypothetical protein (RefSeq), at 400,543 to 401,841
_0406
Dshi_0407: Dshi_0407 - transcriptional regulator, XRE family (RefSeq), at 402,104 to 402,430
_0407
Dshi_0408: Dshi_0408 - protein of unknown function DUF955 (RefSeq), at 402,441 to 403,163
_0408
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 399.557 kb on + strand, within Dshi_0405 at 399.618 kb on + strand, within Dshi_0405 at 399.626 kb on - strand, within Dshi_0405 at 399.697 kb on + strand, within Dshi_0405 at 399.733 kb on - strand, within Dshi_0405 at 399.733 kb on - strand, within Dshi_0405 at 399.749 kb on - strand, within Dshi_0405 at 399.749 kb on - strand, within Dshi_0405 at 399.781 kb on + strand, within Dshi_0405 at 399.781 kb on + strand, within Dshi_0405 at 399.781 kb on + strand, within Dshi_0405 at 399.789 kb on - strand, within Dshi_0405 at 399.789 kb on - strand, within Dshi_0405 at 399.789 kb on - strand, within Dshi_0405 at 399.789 kb on - strand, within Dshi_0405 at 399.825 kb on + strand, within Dshi_0405 at 399.826 kb on + strand, within Dshi_0405 at 399.911 kb on - strand, within Dshi_0405 at 399.913 kb on + strand, within Dshi_0405 at 399.913 kb on + strand, within Dshi_0405 at 399.957 kb on - strand, within Dshi_0405 at 399.969 kb on + strand, within Dshi_0405 at 400.024 kb on + strand, within Dshi_0405 at 400.024 kb on + strand, within Dshi_0405 at 400.088 kb on - strand, within Dshi_0405 at 400.090 kb on + strand, within Dshi_0405 at 400.090 kb on + strand, within Dshi_0405 at 400.090 kb on + strand, within Dshi_0405 at 400.098 kb on - strand, within Dshi_0405 at 400.148 kb on + strand, within Dshi_0405 at 400.153 kb on + strand, within Dshi_0405 at 400.165 kb on + strand, within Dshi_0405 at 400.168 kb on - strand, within Dshi_0405 at 400.168 kb on - strand, within Dshi_0405 at 400.209 kb on - strand, within Dshi_0405 at 400.220 kb on - strand, within Dshi_0405 at 400.227 kb on + strand, within Dshi_0405 at 400.260 kb on - strand, within Dshi_0405 at 400.279 kb on + strand, within Dshi_0405 at 400.284 kb on + strand, within Dshi_0405 at 400.287 kb on - strand at 400.314 kb on - strand, within Dshi_0405 at 400.330 kb on - strand, within Dshi_0405 at 400.368 kb on - strand, within Dshi_0405 at 400.384 kb on - strand, within Dshi_0405 at 400.384 kb on - strand, within Dshi_0405 at 400.395 kb on + strand, within Dshi_0405 at 400.418 kb on - strand, within Dshi_0405 at 400.456 kb on + strand, within Dshi_0405 at 400.476 kb on + strand at 400.476 kb on + strand at 400.484 kb on - strand at 400.508 kb on + strand at 400.525 kb on + strand at 400.559 kb on - strand at 400.559 kb on - strand at 400.570 kb on - strand at 400.575 kb on + strand at 400.611 kb on - strand at 400.620 kb on + strand at 400.646 kb on + strand at 400.688 kb on - strand, within Dshi_0406 at 400.741 kb on + strand, within Dshi_0406 at 400.749 kb on - strand, within Dshi_0406 at 400.832 kb on - strand, within Dshi_0406 at 400.845 kb on + strand, within Dshi_0406 at 400.846 kb on - strand, within Dshi_0406 at 400.902 kb on + strand, within Dshi_0406 at 400.917 kb on + strand, within Dshi_0406 at 400.924 kb on + strand, within Dshi_0406 at 401.004 kb on + strand, within Dshi_0406 at 401.004 kb on + strand, within Dshi_0406 at 401.012 kb on - strand, within Dshi_0406 at 401.033 kb on + strand, within Dshi_0406 at 401.073 kb on + strand, within Dshi_0406 at 401.090 kb on - strand, within Dshi_0406 at 401.107 kb on + strand, within Dshi_0406 at 401.107 kb on + strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.123 kb on - strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.127 kb on + strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.208 kb on + strand, within Dshi_0406 at 401.222 kb on - strand, within Dshi_0406 at 401.241 kb on + strand, within Dshi_0406 at 401.241 kb on + strand, within Dshi_0406 at 401.256 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.275 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.356 kb on + strand, within Dshi_0406 at 401.374 kb on - strand, within Dshi_0406 at 401.380 kb on + strand, within Dshi_0406 at 401.392 kb on + strand, within Dshi_0406 at 401.402 kb on + strand, within Dshi_0406 at 401.402 kb on + strand, within Dshi_0406 at 401.408 kb on + strand, within Dshi_0406 at 401.410 kb on - strand, within Dshi_0406 at 401.411 kb on - strand, within Dshi_0406 at 401.414 kb on - strand, within Dshi_0406 at 401.474 kb on - strand, within Dshi_0406 at 401.477 kb on + strand, within Dshi_0406 at 401.477 kb on + strand, within Dshi_0406 at 401.485 kb on - strand, within Dshi_0406 at 401.495 kb on - strand, within Dshi_0406 at 401.520 kb on - strand, within Dshi_0406 at 401.545 kb on + strand, within Dshi_0406 at 401.577 kb on - strand, within Dshi_0406 at 401.586 kb on - strand, within Dshi_0406 at 401.657 kb on + strand, within Dshi_0406 at 401.662 kb on + strand, within Dshi_0406 at 401.662 kb on + strand, within Dshi_0406 at 401.662 kb on + strand, within Dshi_0406 at 401.670 kb on - strand, within Dshi_0406 at 401.717 kb on + strand at 401.778 kb on + strand at 401.806 kb on + strand at 401.877 kb on - strand at 401.959 kb on + strand at 401.991 kb on - strand at 402.013 kb on + strand at 402.115 kb on + strand at 402.131 kb on - strand at 402.231 kb on + strand, within Dshi_0407 at 402.289 kb on + strand, within Dshi_0407 at 402.311 kb on + strand, within Dshi_0407 at 402.321 kb on + strand, within Dshi_0407 at 402.346 kb on - strand, within Dshi_0407 at 402.566 kb on + strand, within Dshi_0408 at 402.583 kb on + strand, within Dshi_0408 at 402.621 kb on + strand, within Dshi_0408 at 402.630 kb on - strand, within Dshi_0408 at 402.678 kb on + strand, within Dshi_0408 at 402.836 kb on + strand, within Dshi_0408
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 399,557 + Dshi_0405 0.24 +0.4 399,618 + Dshi_0405 0.28 +0.0 399,626 - Dshi_0405 0.29 +1.3 399,697 + Dshi_0405 0.34 -0.1 399,733 - Dshi_0405 0.37 -0.1 399,733 - Dshi_0405 0.37 +0.2 399,749 - Dshi_0405 0.38 +0.2 399,749 - Dshi_0405 0.38 -0.1 399,781 + Dshi_0405 0.40 -0.1 399,781 + Dshi_0405 0.40 +0.1 399,781 + Dshi_0405 0.40 +1.2 399,789 - Dshi_0405 0.41 +0.2 399,789 - Dshi_0405 0.41 -0.7 399,789 - Dshi_0405 0.41 -0.1 399,789 - Dshi_0405 0.41 +0.5 399,825 + Dshi_0405 0.43 -0.3 399,826 + Dshi_0405 0.43 -0.0 399,911 - Dshi_0405 0.49 +0.4 399,913 + Dshi_0405 0.49 +0.4 399,913 + Dshi_0405 0.49 -1.0 399,957 - Dshi_0405 0.53 +0.4 399,969 + Dshi_0405 0.54 +0.5 400,024 + Dshi_0405 0.58 -0.2 400,024 + Dshi_0405 0.58 +0.2 400,088 - Dshi_0405 0.62 +0.9 400,090 + Dshi_0405 0.62 +0.7 400,090 + Dshi_0405 0.62 +1.5 400,090 + Dshi_0405 0.62 +0.1 400,098 - Dshi_0405 0.63 +0.1 400,148 + Dshi_0405 0.66 +0.2 400,153 + Dshi_0405 0.67 -0.2 400,165 + Dshi_0405 0.68 -0.0 400,168 - Dshi_0405 0.68 -0.1 400,168 - Dshi_0405 0.68 +0.0 400,209 - Dshi_0405 0.71 +0.4 400,220 - Dshi_0405 0.72 +1.4 400,227 + Dshi_0405 0.72 +0.1 400,260 - Dshi_0405 0.75 +0.4 400,279 + Dshi_0405 0.76 +0.2 400,284 + Dshi_0405 0.76 -1.0 400,287 - -0.1 400,314 - Dshi_0405 0.78 +0.1 400,330 - Dshi_0405 0.80 +0.8 400,368 - Dshi_0405 0.82 -0.6 400,384 - Dshi_0405 0.83 +0.4 400,384 - Dshi_0405 0.83 -0.2 400,395 + Dshi_0405 0.84 -0.8 400,418 - Dshi_0405 0.86 -0.8 400,456 + Dshi_0405 0.89 +0.3 400,476 + -0.3 400,476 + -0.3 400,484 - -0.4 400,508 + +0.1 400,525 + +0.4 400,559 - -0.2 400,559 - -1.3 400,570 - -2.9 400,575 + +0.3 400,611 - -0.4 400,620 + +0.2 400,646 + +0.4 400,688 - Dshi_0406 0.11 -0.5 400,741 + Dshi_0406 0.15 +0.7 400,749 - Dshi_0406 0.16 +1.1 400,832 - Dshi_0406 0.22 -0.1 400,845 + Dshi_0406 0.23 +0.5 400,846 - Dshi_0406 0.23 +0.1 400,902 + Dshi_0406 0.28 +0.6 400,917 + Dshi_0406 0.29 +0.5 400,924 + Dshi_0406 0.29 +0.9 401,004 + Dshi_0406 0.35 -0.2 401,004 + Dshi_0406 0.35 -0.4 401,012 - Dshi_0406 0.36 -0.1 401,033 + Dshi_0406 0.38 +0.5 401,073 + Dshi_0406 0.41 +0.3 401,090 - Dshi_0406 0.42 +1.1 401,107 + Dshi_0406 0.43 +0.1 401,107 + Dshi_0406 0.43 +1.3 401,115 - Dshi_0406 0.44 -0.0 401,115 - Dshi_0406 0.44 -0.2 401,115 - Dshi_0406 0.44 +0.4 401,123 - Dshi_0406 0.45 +0.1 401,125 + Dshi_0406 0.45 -0.2 401,125 + Dshi_0406 0.45 +0.1 401,125 + Dshi_0406 0.45 -0.5 401,127 + Dshi_0406 0.45 +0.7 401,133 - Dshi_0406 0.45 +0.9 401,133 - Dshi_0406 0.45 -1.7 401,133 - Dshi_0406 0.45 -0.2 401,133 - Dshi_0406 0.45 -0.2 401,133 - Dshi_0406 0.45 -0.5 401,133 - Dshi_0406 0.45 -0.1 401,133 - Dshi_0406 0.45 +0.1 401,133 - Dshi_0406 0.45 +0.1 401,133 - Dshi_0406 0.45 +1.0 401,208 + Dshi_0406 0.51 -0.0 401,222 - Dshi_0406 0.52 -1.3 401,241 + Dshi_0406 0.54 +0.5 401,241 + Dshi_0406 0.54 +0.4 401,256 + Dshi_0406 0.55 +0.4 401,272 + Dshi_0406 0.56 +0.5 401,272 + Dshi_0406 0.56 +0.8 401,272 + Dshi_0406 0.56 -0.5 401,272 + Dshi_0406 0.56 -1.9 401,272 + Dshi_0406 0.56 +0.4 401,272 + Dshi_0406 0.56 -0.6 401,272 + Dshi_0406 0.56 +0.4 401,275 - Dshi_0406 0.56 -0.5 401,280 - Dshi_0406 0.57 +1.0 401,280 - Dshi_0406 0.57 +0.0 401,280 - Dshi_0406 0.57 +1.3 401,356 + Dshi_0406 0.63 -1.6 401,374 - Dshi_0406 0.64 +0.7 401,380 + Dshi_0406 0.64 +0.3 401,392 + Dshi_0406 0.65 -0.3 401,402 + Dshi_0406 0.66 +0.9 401,402 + Dshi_0406 0.66 +0.5 401,408 + Dshi_0406 0.67 -1.7 401,410 - Dshi_0406 0.67 +0.9 401,411 - Dshi_0406 0.67 +0.1 401,414 - Dshi_0406 0.67 -0.0 401,474 - Dshi_0406 0.72 -0.3 401,477 + Dshi_0406 0.72 +0.4 401,477 + Dshi_0406 0.72 +1.2 401,485 - Dshi_0406 0.73 -0.1 401,495 - Dshi_0406 0.73 -0.7 401,520 - Dshi_0406 0.75 -0.4 401,545 + Dshi_0406 0.77 +0.1 401,577 - Dshi_0406 0.80 -0.2 401,586 - Dshi_0406 0.80 +0.2 401,657 + Dshi_0406 0.86 +0.5 401,662 + Dshi_0406 0.86 -0.0 401,662 + Dshi_0406 0.86 +0.2 401,662 + Dshi_0406 0.86 +0.1 401,670 - Dshi_0406 0.87 +0.1 401,717 + +0.0 401,778 + +0.1 401,806 + -0.3 401,877 - -0.4 401,959 + +0.0 401,991 - +1.0 402,013 + -1.7 402,115 + +0.1 402,131 - -0.9 402,231 + Dshi_0407 0.39 -0.0 402,289 + Dshi_0407 0.57 +1.2 402,311 + Dshi_0407 0.63 +0.3 402,321 + Dshi_0407 0.66 -0.0 402,346 - Dshi_0407 0.74 +1.5 402,566 + Dshi_0408 0.17 +0.3 402,583 + Dshi_0408 0.20 +0.8 402,621 + Dshi_0408 0.25 -2.9 402,630 - Dshi_0408 0.26 +0.8 402,678 + Dshi_0408 0.33 -0.2 402,836 + Dshi_0408 0.55 -0.2
Or see this region's nucleotide sequence