Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0176

Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0175 and Dshi_0176 are separated by 123 nucleotidesDshi_0176 and Dshi_0177 are separated by 60 nucleotidesDshi_0177 and Dshi_0178 are separated by 3 nucleotides Dshi_0175: Dshi_0175 - precorrin-3B C17-methyltransferase (RefSeq), at 178,678 to 180,483 _0175 Dshi_0176: Dshi_0176 - precorrin-4 C11-methyltransferase (RefSeq), at 180,607 to 181,383 _0176 Dshi_0177: Dshi_0177 - hypothetical protein (RefSeq), at 181,444 to 181,797 _0177 Dshi_0178: Dshi_0178 - aminotransferase class I and II (RefSeq), at 181,801 to 182,973 _0178 Position (kb) 180 181 182Strain fitness (log2 ratio) -1 0 1at 180.583 kb on - strandat 180.583 kb on - strandat 181.416 kb on + strandat 181.696 kb on - strand, within Dshi_0177at 181.908 kb on + strandat 181.916 kb on - strandat 181.979 kb on - strand, within Dshi_0178at 182.002 kb on + strand, within Dshi_0178at 182.002 kb on + strand, within Dshi_0178at 182.351 kb on - strand, within Dshi_0178at 182.361 kb on - strand, within Dshi_0178

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml
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180,583 - -0.3
180,583 - +1.4
181,416 + +0.0
181,696 - Dshi_0177 0.71 +0.1
181,908 + -0.7
181,916 - +0.8
181,979 - Dshi_0178 0.15 -0.4
182,002 + Dshi_0178 0.17 -1.1
182,002 + Dshi_0178 0.17 -0.1
182,351 - Dshi_0178 0.47 +0.6
182,361 - Dshi_0178 0.48 -0.3

Or see this region's nucleotide sequence