Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19615 and CSW01_19620 are separated by 10 nucleotides CSW01_19620 and CSW01_19625 are separated by 173 nucleotides CSW01_19625 and CSW01_19630 are separated by 127 nucleotides
CSW01_19615: CSW01_19615 - long-chain fatty acid--CoA ligase, at 1,062,550 to 1,064,073
_19615
CSW01_19620: CSW01_19620 - delta-VPH, at 1,064,084 to 1,064,686
_19620
CSW01_19625: CSW01_19625 - tRNA cytosine(34) acetyltransferase TmcA, at 1,064,860 to 1,066,986
_19625
CSW01_19630: CSW01_19630 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,067,114 to 1,068,145
_19630
Position (kb)
1064
1065
1066
1067 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1063.954 kb on + strand at 1063.962 kb on - strand at 1064.040 kb on - strand at 1064.040 kb on - strand at 1064.090 kb on - strand at 1064.137 kb on - strand at 1064.168 kb on - strand, within CSW01_19620 at 1064.186 kb on + strand, within CSW01_19620 at 1064.227 kb on - strand, within CSW01_19620 at 1064.227 kb on - strand, within CSW01_19620 at 1064.242 kb on - strand, within CSW01_19620 at 1064.266 kb on - strand, within CSW01_19620 at 1064.394 kb on + strand, within CSW01_19620 at 1064.513 kb on + strand, within CSW01_19620 at 1064.567 kb on - strand, within CSW01_19620 at 1064.645 kb on - strand at 1064.680 kb on - strand at 1064.680 kb on - strand at 1064.841 kb on + strand at 1064.884 kb on + strand at 1065.049 kb on - strand at 1065.056 kb on + strand at 1065.056 kb on + strand at 1065.056 kb on + strand at 1065.127 kb on + strand, within CSW01_19625 at 1065.127 kb on + strand, within CSW01_19625 at 1065.133 kb on - strand, within CSW01_19625 at 1065.135 kb on - strand, within CSW01_19625 at 1065.135 kb on - strand, within CSW01_19625 at 1065.147 kb on + strand, within CSW01_19625 at 1065.208 kb on - strand, within CSW01_19625 at 1065.389 kb on - strand, within CSW01_19625 at 1065.445 kb on + strand, within CSW01_19625 at 1065.445 kb on + strand, within CSW01_19625 at 1065.445 kb on + strand, within CSW01_19625 at 1065.445 kb on + strand, within CSW01_19625 at 1065.610 kb on + strand, within CSW01_19625 at 1065.657 kb on + strand, within CSW01_19625 at 1065.757 kb on + strand, within CSW01_19625 at 1065.757 kb on + strand, within CSW01_19625 at 1065.765 kb on - strand, within CSW01_19625 at 1065.780 kb on + strand, within CSW01_19625 at 1065.788 kb on + strand, within CSW01_19625 at 1065.796 kb on - strand, within CSW01_19625 at 1065.796 kb on - strand, within CSW01_19625 at 1065.842 kb on - strand, within CSW01_19625 at 1065.842 kb on - strand, within CSW01_19625 at 1065.842 kb on - strand, within CSW01_19625 at 1065.845 kb on + strand, within CSW01_19625 at 1065.891 kb on + strand, within CSW01_19625 at 1065.927 kb on + strand, within CSW01_19625 at 1066.126 kb on - strand, within CSW01_19625 at 1066.243 kb on - strand, within CSW01_19625 at 1066.303 kb on - strand, within CSW01_19625 at 1066.305 kb on - strand, within CSW01_19625 at 1066.305 kb on - strand, within CSW01_19625 at 1066.321 kb on - strand, within CSW01_19625 at 1066.367 kb on - strand, within CSW01_19625 at 1066.367 kb on - strand, within CSW01_19625 at 1066.399 kb on - strand, within CSW01_19625 at 1066.427 kb on + strand, within CSW01_19625 at 1066.442 kb on + strand, within CSW01_19625 at 1066.477 kb on + strand, within CSW01_19625 at 1066.529 kb on + strand, within CSW01_19625 at 1066.529 kb on + strand, within CSW01_19625 at 1066.529 kb on + strand, within CSW01_19625 at 1066.537 kb on - strand, within CSW01_19625 at 1066.537 kb on - strand, within CSW01_19625 at 1066.537 kb on - strand, within CSW01_19625 at 1066.552 kb on - strand, within CSW01_19625 at 1066.684 kb on + strand, within CSW01_19625 at 1066.720 kb on + strand, within CSW01_19625 at 1066.728 kb on - strand, within CSW01_19625 at 1066.797 kb on + strand at 1066.803 kb on + strand at 1066.803 kb on + strand at 1066.811 kb on - strand at 1066.897 kb on - strand at 1066.933 kb on + strand at 1066.941 kb on - strand at 1066.955 kb on - strand at 1067.167 kb on + strand at 1067.168 kb on - strand at 1067.168 kb on - strand at 1067.184 kb on + strand at 1067.184 kb on + strand at 1067.184 kb on + strand at 1067.192 kb on - strand at 1067.192 kb on - strand at 1067.192 kb on - strand at 1067.381 kb on + strand, within CSW01_19630 at 1067.520 kb on + strand, within CSW01_19630 at 1067.525 kb on + strand, within CSW01_19630 at 1067.528 kb on - strand, within CSW01_19630 at 1067.528 kb on - strand, within CSW01_19630 at 1067.528 kb on - strand, within CSW01_19630 at 1067.528 kb on - strand, within CSW01_19630 at 1067.528 kb on - strand, within CSW01_19630 at 1067.555 kb on + strand, within CSW01_19630 at 1067.569 kb on + strand, within CSW01_19630 at 1067.722 kb on + strand, within CSW01_19630 at 1067.730 kb on - strand, within CSW01_19630 at 1067.736 kb on + strand, within CSW01_19630 at 1067.745 kb on + strand, within CSW01_19630 at 1067.780 kb on + strand, within CSW01_19630 at 1067.967 kb on + strand, within CSW01_19630 at 1067.972 kb on + strand, within CSW01_19630 at 1067.972 kb on + strand, within CSW01_19630
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B remove 1,063,954 + -0.7 1,063,962 - +0.2 1,064,040 - +0.2 1,064,040 - -1.7 1,064,090 - -1.0 1,064,137 - +0.0 1,064,168 - CSW01_19620 0.14 +0.8 1,064,186 + CSW01_19620 0.17 +0.5 1,064,227 - CSW01_19620 0.24 +1.5 1,064,227 - CSW01_19620 0.24 +0.4 1,064,242 - CSW01_19620 0.26 +0.4 1,064,266 - CSW01_19620 0.30 -0.1 1,064,394 + CSW01_19620 0.51 +0.6 1,064,513 + CSW01_19620 0.71 -1.0 1,064,567 - CSW01_19620 0.80 -0.1 1,064,645 - -0.5 1,064,680 - -0.2 1,064,680 - -1.3 1,064,841 + +0.2 1,064,884 + -0.5 1,065,049 - +0.0 1,065,056 + +0.1 1,065,056 + -0.4 1,065,056 + +0.4 1,065,127 + CSW01_19625 0.13 -0.6 1,065,127 + CSW01_19625 0.13 -0.6 1,065,133 - CSW01_19625 0.13 +1.1 1,065,135 - CSW01_19625 0.13 -0.5 1,065,135 - CSW01_19625 0.13 +1.5 1,065,147 + CSW01_19625 0.13 -0.2 1,065,208 - CSW01_19625 0.16 -0.4 1,065,389 - CSW01_19625 0.25 +0.7 1,065,445 + CSW01_19625 0.28 -0.7 1,065,445 + CSW01_19625 0.28 -0.4 1,065,445 + CSW01_19625 0.28 -0.2 1,065,445 + CSW01_19625 0.28 +0.3 1,065,610 + CSW01_19625 0.35 -0.4 1,065,657 + CSW01_19625 0.37 +1.5 1,065,757 + CSW01_19625 0.42 -1.0 1,065,757 + CSW01_19625 0.42 -0.4 1,065,765 - CSW01_19625 0.43 -0.4 1,065,780 + CSW01_19625 0.43 -1.0 1,065,788 + CSW01_19625 0.44 -0.5 1,065,796 - CSW01_19625 0.44 +0.6 1,065,796 - CSW01_19625 0.44 -0.6 1,065,842 - CSW01_19625 0.46 +1.1 1,065,842 - CSW01_19625 0.46 +0.7 1,065,842 - CSW01_19625 0.46 -1.3 1,065,845 + CSW01_19625 0.46 -0.7 1,065,891 + CSW01_19625 0.48 +0.9 1,065,927 + CSW01_19625 0.50 +0.4 1,066,126 - CSW01_19625 0.60 +0.2 1,066,243 - CSW01_19625 0.65 -0.1 1,066,303 - CSW01_19625 0.68 -3.4 1,066,305 - CSW01_19625 0.68 -0.4 1,066,305 - CSW01_19625 0.68 +0.4 1,066,321 - CSW01_19625 0.69 -0.3 1,066,367 - CSW01_19625 0.71 +1.0 1,066,367 - CSW01_19625 0.71 -0.4 1,066,399 - CSW01_19625 0.72 -1.1 1,066,427 + CSW01_19625 0.74 +1.0 1,066,442 + CSW01_19625 0.74 -0.4 1,066,477 + CSW01_19625 0.76 -0.4 1,066,529 + CSW01_19625 0.78 -0.7 1,066,529 + CSW01_19625 0.78 -0.0 1,066,529 + CSW01_19625 0.78 +0.2 1,066,537 - CSW01_19625 0.79 -0.7 1,066,537 - CSW01_19625 0.79 -0.5 1,066,537 - CSW01_19625 0.79 +0.4 1,066,552 - CSW01_19625 0.80 +1.0 1,066,684 + CSW01_19625 0.86 +0.3 1,066,720 + CSW01_19625 0.87 +0.1 1,066,728 - CSW01_19625 0.88 +0.2 1,066,797 + +0.7 1,066,803 + +0.4 1,066,803 + +1.9 1,066,811 - +0.5 1,066,897 - +1.3 1,066,933 + +0.3 1,066,941 - +0.3 1,066,955 - -0.4 1,067,167 + +0.2 1,067,168 - +0.5 1,067,168 - -0.1 1,067,184 + +0.8 1,067,184 + +0.5 1,067,184 + +0.9 1,067,192 - -0.0 1,067,192 - -0.4 1,067,192 - -0.9 1,067,381 + CSW01_19630 0.26 +0.8 1,067,520 + CSW01_19630 0.39 +0.5 1,067,525 + CSW01_19630 0.40 +0.2 1,067,528 - CSW01_19630 0.40 -0.3 1,067,528 - CSW01_19630 0.40 +0.8 1,067,528 - CSW01_19630 0.40 -0.2 1,067,528 - CSW01_19630 0.40 -0.4 1,067,528 - CSW01_19630 0.40 +0.3 1,067,555 + CSW01_19630 0.43 -0.7 1,067,569 + CSW01_19630 0.44 -0.4 1,067,722 + CSW01_19630 0.59 +0.5 1,067,730 - CSW01_19630 0.60 -0.4 1,067,736 + CSW01_19630 0.60 +0.6 1,067,745 + CSW01_19630 0.61 -0.4 1,067,780 + CSW01_19630 0.65 +0.6 1,067,967 + CSW01_19630 0.83 -0.6 1,067,972 + CSW01_19630 0.83 -0.1 1,067,972 + CSW01_19630 0.83 -0.2
Or see this region's nucleotide sequence