Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19625

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19615 and CSW01_19620 are separated by 10 nucleotidesCSW01_19620 and CSW01_19625 are separated by 173 nucleotidesCSW01_19625 and CSW01_19630 are separated by 127 nucleotides CSW01_19615: CSW01_19615 - long-chain fatty acid--CoA ligase, at 1,062,550 to 1,064,073 _19615 CSW01_19620: CSW01_19620 - delta-VPH, at 1,064,084 to 1,064,686 _19620 CSW01_19625: CSW01_19625 - tRNA cytosine(34) acetyltransferase TmcA, at 1,064,860 to 1,066,986 _19625 CSW01_19630: CSW01_19630 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,067,114 to 1,068,145 _19630 Position (kb) 1064 1065 1066 1067Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1063.954 kb on + strandat 1063.962 kb on - strandat 1064.040 kb on - strandat 1064.040 kb on - strandat 1064.090 kb on - strandat 1064.137 kb on - strandat 1064.168 kb on - strand, within CSW01_19620at 1064.186 kb on + strand, within CSW01_19620at 1064.227 kb on - strand, within CSW01_19620at 1064.227 kb on - strand, within CSW01_19620at 1064.242 kb on - strand, within CSW01_19620at 1064.266 kb on - strand, within CSW01_19620at 1064.394 kb on + strand, within CSW01_19620at 1064.513 kb on + strand, within CSW01_19620at 1064.567 kb on - strand, within CSW01_19620at 1064.645 kb on - strandat 1064.680 kb on - strandat 1064.680 kb on - strandat 1064.841 kb on + strandat 1064.884 kb on + strandat 1065.049 kb on - strandat 1065.056 kb on + strandat 1065.056 kb on + strandat 1065.056 kb on + strandat 1065.127 kb on + strand, within CSW01_19625at 1065.127 kb on + strand, within CSW01_19625at 1065.133 kb on - strand, within CSW01_19625at 1065.135 kb on - strand, within CSW01_19625at 1065.135 kb on - strand, within CSW01_19625at 1065.147 kb on + strand, within CSW01_19625at 1065.208 kb on - strand, within CSW01_19625at 1065.389 kb on - strand, within CSW01_19625at 1065.445 kb on + strand, within CSW01_19625at 1065.445 kb on + strand, within CSW01_19625at 1065.445 kb on + strand, within CSW01_19625at 1065.445 kb on + strand, within CSW01_19625at 1065.610 kb on + strand, within CSW01_19625at 1065.657 kb on + strand, within CSW01_19625at 1065.757 kb on + strand, within CSW01_19625at 1065.757 kb on + strand, within CSW01_19625at 1065.765 kb on - strand, within CSW01_19625at 1065.780 kb on + strand, within CSW01_19625at 1065.788 kb on + strand, within CSW01_19625at 1065.796 kb on - strand, within CSW01_19625at 1065.796 kb on - strand, within CSW01_19625at 1065.842 kb on - strand, within CSW01_19625at 1065.842 kb on - strand, within CSW01_19625at 1065.842 kb on - strand, within CSW01_19625at 1065.845 kb on + strand, within CSW01_19625at 1065.891 kb on + strand, within CSW01_19625at 1065.927 kb on + strand, within CSW01_19625at 1066.126 kb on - strand, within CSW01_19625at 1066.243 kb on - strand, within CSW01_19625at 1066.303 kb on - strand, within CSW01_19625at 1066.305 kb on - strand, within CSW01_19625at 1066.305 kb on - strand, within CSW01_19625at 1066.321 kb on - strand, within CSW01_19625at 1066.367 kb on - strand, within CSW01_19625at 1066.367 kb on - strand, within CSW01_19625at 1066.399 kb on - strand, within CSW01_19625at 1066.427 kb on + strand, within CSW01_19625at 1066.442 kb on + strand, within CSW01_19625at 1066.477 kb on + strand, within CSW01_19625at 1066.529 kb on + strand, within CSW01_19625at 1066.529 kb on + strand, within CSW01_19625at 1066.529 kb on + strand, within CSW01_19625at 1066.537 kb on - strand, within CSW01_19625at 1066.537 kb on - strand, within CSW01_19625at 1066.537 kb on - strand, within CSW01_19625at 1066.552 kb on - strand, within CSW01_19625at 1066.684 kb on + strand, within CSW01_19625at 1066.720 kb on + strand, within CSW01_19625at 1066.728 kb on - strand, within CSW01_19625at 1066.797 kb on + strandat 1066.803 kb on + strandat 1066.803 kb on + strandat 1066.811 kb on - strandat 1066.897 kb on - strandat 1066.933 kb on + strandat 1066.941 kb on - strandat 1066.955 kb on - strandat 1067.167 kb on + strandat 1067.168 kb on - strandat 1067.168 kb on - strandat 1067.184 kb on + strandat 1067.184 kb on + strandat 1067.184 kb on + strandat 1067.192 kb on - strandat 1067.192 kb on - strandat 1067.192 kb on - strandat 1067.381 kb on + strand, within CSW01_19630at 1067.520 kb on + strand, within CSW01_19630at 1067.525 kb on + strand, within CSW01_19630at 1067.528 kb on - strand, within CSW01_19630at 1067.528 kb on - strand, within CSW01_19630at 1067.528 kb on - strand, within CSW01_19630at 1067.528 kb on - strand, within CSW01_19630at 1067.528 kb on - strand, within CSW01_19630at 1067.555 kb on + strand, within CSW01_19630at 1067.569 kb on + strand, within CSW01_19630at 1067.722 kb on + strand, within CSW01_19630at 1067.730 kb on - strand, within CSW01_19630at 1067.736 kb on + strand, within CSW01_19630at 1067.745 kb on + strand, within CSW01_19630at 1067.780 kb on + strand, within CSW01_19630at 1067.967 kb on + strand, within CSW01_19630at 1067.972 kb on + strand, within CSW01_19630at 1067.972 kb on + strand, within CSW01_19630

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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1,063,954 + -0.7
1,063,962 - +0.2
1,064,040 - +0.2
1,064,040 - -1.7
1,064,090 - -1.0
1,064,137 - +0.0
1,064,168 - CSW01_19620 0.14 +0.8
1,064,186 + CSW01_19620 0.17 +0.5
1,064,227 - CSW01_19620 0.24 +1.5
1,064,227 - CSW01_19620 0.24 +0.4
1,064,242 - CSW01_19620 0.26 +0.4
1,064,266 - CSW01_19620 0.30 -0.1
1,064,394 + CSW01_19620 0.51 +0.6
1,064,513 + CSW01_19620 0.71 -1.0
1,064,567 - CSW01_19620 0.80 -0.1
1,064,645 - -0.5
1,064,680 - -0.2
1,064,680 - -1.3
1,064,841 + +0.2
1,064,884 + -0.5
1,065,049 - +0.0
1,065,056 + +0.1
1,065,056 + -0.4
1,065,056 + +0.4
1,065,127 + CSW01_19625 0.13 -0.6
1,065,127 + CSW01_19625 0.13 -0.6
1,065,133 - CSW01_19625 0.13 +1.1
1,065,135 - CSW01_19625 0.13 -0.5
1,065,135 - CSW01_19625 0.13 +1.5
1,065,147 + CSW01_19625 0.13 -0.2
1,065,208 - CSW01_19625 0.16 -0.4
1,065,389 - CSW01_19625 0.25 +0.7
1,065,445 + CSW01_19625 0.28 -0.7
1,065,445 + CSW01_19625 0.28 -0.4
1,065,445 + CSW01_19625 0.28 -0.2
1,065,445 + CSW01_19625 0.28 +0.3
1,065,610 + CSW01_19625 0.35 -0.4
1,065,657 + CSW01_19625 0.37 +1.5
1,065,757 + CSW01_19625 0.42 -1.0
1,065,757 + CSW01_19625 0.42 -0.4
1,065,765 - CSW01_19625 0.43 -0.4
1,065,780 + CSW01_19625 0.43 -1.0
1,065,788 + CSW01_19625 0.44 -0.5
1,065,796 - CSW01_19625 0.44 +0.6
1,065,796 - CSW01_19625 0.44 -0.6
1,065,842 - CSW01_19625 0.46 +1.1
1,065,842 - CSW01_19625 0.46 +0.7
1,065,842 - CSW01_19625 0.46 -1.3
1,065,845 + CSW01_19625 0.46 -0.7
1,065,891 + CSW01_19625 0.48 +0.9
1,065,927 + CSW01_19625 0.50 +0.4
1,066,126 - CSW01_19625 0.60 +0.2
1,066,243 - CSW01_19625 0.65 -0.1
1,066,303 - CSW01_19625 0.68 -3.4
1,066,305 - CSW01_19625 0.68 -0.4
1,066,305 - CSW01_19625 0.68 +0.4
1,066,321 - CSW01_19625 0.69 -0.3
1,066,367 - CSW01_19625 0.71 +1.0
1,066,367 - CSW01_19625 0.71 -0.4
1,066,399 - CSW01_19625 0.72 -1.1
1,066,427 + CSW01_19625 0.74 +1.0
1,066,442 + CSW01_19625 0.74 -0.4
1,066,477 + CSW01_19625 0.76 -0.4
1,066,529 + CSW01_19625 0.78 -0.7
1,066,529 + CSW01_19625 0.78 -0.0
1,066,529 + CSW01_19625 0.78 +0.2
1,066,537 - CSW01_19625 0.79 -0.7
1,066,537 - CSW01_19625 0.79 -0.5
1,066,537 - CSW01_19625 0.79 +0.4
1,066,552 - CSW01_19625 0.80 +1.0
1,066,684 + CSW01_19625 0.86 +0.3
1,066,720 + CSW01_19625 0.87 +0.1
1,066,728 - CSW01_19625 0.88 +0.2
1,066,797 + +0.7
1,066,803 + +0.4
1,066,803 + +1.9
1,066,811 - +0.5
1,066,897 - +1.3
1,066,933 + +0.3
1,066,941 - +0.3
1,066,955 - -0.4
1,067,167 + +0.2
1,067,168 - +0.5
1,067,168 - -0.1
1,067,184 + +0.8
1,067,184 + +0.5
1,067,184 + +0.9
1,067,192 - -0.0
1,067,192 - -0.4
1,067,192 - -0.9
1,067,381 + CSW01_19630 0.26 +0.8
1,067,520 + CSW01_19630 0.39 +0.5
1,067,525 + CSW01_19630 0.40 +0.2
1,067,528 - CSW01_19630 0.40 -0.3
1,067,528 - CSW01_19630 0.40 +0.8
1,067,528 - CSW01_19630 0.40 -0.2
1,067,528 - CSW01_19630 0.40 -0.4
1,067,528 - CSW01_19630 0.40 +0.3
1,067,555 + CSW01_19630 0.43 -0.7
1,067,569 + CSW01_19630 0.44 -0.4
1,067,722 + CSW01_19630 0.59 +0.5
1,067,730 - CSW01_19630 0.60 -0.4
1,067,736 + CSW01_19630 0.60 +0.6
1,067,745 + CSW01_19630 0.61 -0.4
1,067,780 + CSW01_19630 0.65 +0.6
1,067,967 + CSW01_19630 0.83 -0.6
1,067,972 + CSW01_19630 0.83 -0.1
1,067,972 + CSW01_19630 0.83 -0.2

Or see this region's nucleotide sequence