Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19320

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19315 and CSW01_19320 are separated by 100 nucleotidesCSW01_19320 and CSW01_19325 are separated by 48 nucleotidesCSW01_19325 and CSW01_19330 are separated by 113 nucleotides CSW01_19315: CSW01_19315 - PTS mannitol transporter subunit IICBA, at 993,063 to 995,012 _19315 CSW01_19320: CSW01_19320 - mannitol-1-phosphate 5-dehydrogenase, at 995,113 to 996,267 _19320 CSW01_19325: CSW01_19325 - MltR family transcriptional regulator, at 996,316 to 996,897 _19325 CSW01_19330: CSW01_19330 - gfo/Idh/MocA family oxidoreductase, at 997,011 to 997,946 _19330 Position (kb) 995 996 997Strain fitness (log2 ratio) -1 0 1 2at 994.157 kb on - strand, within CSW01_19315at 994.216 kb on + strand, within CSW01_19315at 994.246 kb on + strand, within CSW01_19315at 994.455 kb on - strand, within CSW01_19315at 994.494 kb on + strand, within CSW01_19315at 994.511 kb on + strand, within CSW01_19315at 994.562 kb on + strand, within CSW01_19315at 994.602 kb on + strand, within CSW01_19315at 994.688 kb on - strand, within CSW01_19315at 994.688 kb on - strand, within CSW01_19315at 994.688 kb on - strand, within CSW01_19315at 994.715 kb on + strand, within CSW01_19315at 994.720 kb on + strand, within CSW01_19315at 994.726 kb on + strand, within CSW01_19315at 994.726 kb on + strand, within CSW01_19315at 994.751 kb on + strand, within CSW01_19315at 994.756 kb on + strand, within CSW01_19315at 994.756 kb on + strand, within CSW01_19315at 994.972 kb on - strandat 995.036 kb on - strandat 995.057 kb on - strandat 995.140 kb on + strandat 995.172 kb on + strandat 995.276 kb on - strand, within CSW01_19320at 995.311 kb on + strand, within CSW01_19320at 995.321 kb on + strand, within CSW01_19320at 995.324 kb on - strand, within CSW01_19320at 995.329 kb on - strand, within CSW01_19320at 995.389 kb on - strand, within CSW01_19320at 995.402 kb on - strand, within CSW01_19320at 995.421 kb on + strand, within CSW01_19320at 995.429 kb on - strand, within CSW01_19320at 995.429 kb on - strand, within CSW01_19320at 995.454 kb on - strand, within CSW01_19320at 995.455 kb on - strand, within CSW01_19320at 995.474 kb on + strand, within CSW01_19320at 995.504 kb on + strand, within CSW01_19320at 995.504 kb on + strand, within CSW01_19320at 995.512 kb on - strand, within CSW01_19320at 995.595 kb on + strand, within CSW01_19320at 995.690 kb on - strand, within CSW01_19320at 995.690 kb on - strand, within CSW01_19320at 995.697 kb on - strand, within CSW01_19320at 995.703 kb on + strand, within CSW01_19320at 995.711 kb on - strand, within CSW01_19320at 995.764 kb on - strand, within CSW01_19320at 995.801 kb on + strand, within CSW01_19320at 995.809 kb on - strand, within CSW01_19320at 995.867 kb on - strand, within CSW01_19320at 995.867 kb on - strand, within CSW01_19320at 995.872 kb on + strand, within CSW01_19320at 995.890 kb on + strand, within CSW01_19320at 995.890 kb on + strand, within CSW01_19320at 995.890 kb on + strand, within CSW01_19320at 995.890 kb on + strand, within CSW01_19320at 995.898 kb on - strand, within CSW01_19320at 995.920 kb on + strand, within CSW01_19320at 995.920 kb on + strand, within CSW01_19320at 995.930 kb on + strand, within CSW01_19320at 996.056 kb on + strand, within CSW01_19320at 996.059 kb on + strand, within CSW01_19320at 996.072 kb on - strand, within CSW01_19320at 996.072 kb on - strand, within CSW01_19320at 996.190 kb on - strandat 996.190 kb on - strandat 996.190 kb on - strandat 996.256 kb on + strandat 996.342 kb on + strandat 996.350 kb on - strandat 996.404 kb on + strand, within CSW01_19325at 996.404 kb on + strand, within CSW01_19325at 996.409 kb on + strand, within CSW01_19325at 996.417 kb on - strand, within CSW01_19325at 996.553 kb on - strand, within CSW01_19325at 996.553 kb on - strand, within CSW01_19325at 996.553 kb on - strand, within CSW01_19325at 996.563 kb on + strand, within CSW01_19325at 996.634 kb on - strand, within CSW01_19325at 996.711 kb on + strand, within CSW01_19325at 996.727 kb on - strand, within CSW01_19325at 996.828 kb on + strand, within CSW01_19325at 996.836 kb on - strand, within CSW01_19325at 996.971 kb on + strandat 996.971 kb on + strandat 996.975 kb on - strandat 996.978 kb on + strandat 996.979 kb on - strandat 996.985 kb on - strandat 997.129 kb on + strand, within CSW01_19330at 997.131 kb on + strand, within CSW01_19330at 997.153 kb on + strand, within CSW01_19330at 997.191 kb on + strand, within CSW01_19330at 997.195 kb on - strand, within CSW01_19330at 997.203 kb on + strand, within CSW01_19330at 997.203 kb on + strand, within CSW01_19330at 997.211 kb on - strand, within CSW01_19330at 997.224 kb on + strand, within CSW01_19330at 997.232 kb on - strand, within CSW01_19330at 997.232 kb on - strand, within CSW01_19330

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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994,157 - CSW01_19315 0.56 -0.3
994,216 + CSW01_19315 0.59 +0.1
994,246 + CSW01_19315 0.61 +1.1
994,455 - CSW01_19315 0.71 +1.8
994,494 + CSW01_19315 0.73 -0.9
994,511 + CSW01_19315 0.74 -0.8
994,562 + CSW01_19315 0.77 +0.2
994,602 + CSW01_19315 0.79 +0.7
994,688 - CSW01_19315 0.83 +0.5
994,688 - CSW01_19315 0.83 +0.6
994,688 - CSW01_19315 0.83 +0.5
994,715 + CSW01_19315 0.85 +0.1
994,720 + CSW01_19315 0.85 +1.5
994,726 + CSW01_19315 0.85 +0.3
994,726 + CSW01_19315 0.85 +1.6
994,751 + CSW01_19315 0.87 -0.2
994,756 + CSW01_19315 0.87 +1.2
994,756 + CSW01_19315 0.87 +0.3
994,972 - +0.1
995,036 - +0.6
995,057 - +0.7
995,140 + +0.5
995,172 + +0.8
995,276 - CSW01_19320 0.14 -0.7
995,311 + CSW01_19320 0.17 -0.7
995,321 + CSW01_19320 0.18 +0.1
995,324 - CSW01_19320 0.18 +0.5
995,329 - CSW01_19320 0.19 +0.9
995,389 - CSW01_19320 0.24 +0.1
995,402 - CSW01_19320 0.25 +0.5
995,421 + CSW01_19320 0.27 -0.9
995,429 - CSW01_19320 0.27 -1.1
995,429 - CSW01_19320 0.27 -0.2
995,454 - CSW01_19320 0.30 +0.2
995,455 - CSW01_19320 0.30 +0.1
995,474 + CSW01_19320 0.31 -0.8
995,504 + CSW01_19320 0.34 -0.1
995,504 + CSW01_19320 0.34 +0.5
995,512 - CSW01_19320 0.35 +0.3
995,595 + CSW01_19320 0.42 +0.6
995,690 - CSW01_19320 0.50 -0.0
995,690 - CSW01_19320 0.50 -0.1
995,697 - CSW01_19320 0.51 +0.3
995,703 + CSW01_19320 0.51 -0.2
995,711 - CSW01_19320 0.52 -0.1
995,764 - CSW01_19320 0.56 -0.6
995,801 + CSW01_19320 0.60 +0.9
995,809 - CSW01_19320 0.60 +0.0
995,867 - CSW01_19320 0.65 +0.3
995,867 - CSW01_19320 0.65 +0.6
995,872 + CSW01_19320 0.66 -0.0
995,890 + CSW01_19320 0.67 -0.5
995,890 + CSW01_19320 0.67 -0.5
995,890 + CSW01_19320 0.67 +0.5
995,890 + CSW01_19320 0.67 +0.3
995,898 - CSW01_19320 0.68 +1.4
995,920 + CSW01_19320 0.70 -0.8
995,920 + CSW01_19320 0.70 -0.1
995,930 + CSW01_19320 0.71 -0.9
996,056 + CSW01_19320 0.82 -1.0
996,059 + CSW01_19320 0.82 +1.0
996,072 - CSW01_19320 0.83 +1.3
996,072 - CSW01_19320 0.83 -0.1
996,190 - +0.6
996,190 - +0.4
996,190 - +1.3
996,256 + -0.4
996,342 + +0.1
996,350 - +0.0
996,404 + CSW01_19325 0.15 +1.0
996,404 + CSW01_19325 0.15 +0.5
996,409 + CSW01_19325 0.16 -0.1
996,417 - CSW01_19325 0.17 +0.2
996,553 - CSW01_19325 0.41 +0.9
996,553 - CSW01_19325 0.41 +0.1
996,553 - CSW01_19325 0.41 +0.8
996,563 + CSW01_19325 0.42 +0.4
996,634 - CSW01_19325 0.55 -1.7
996,711 + CSW01_19325 0.68 -0.7
996,727 - CSW01_19325 0.71 +0.2
996,828 + CSW01_19325 0.88 +0.3
996,836 - CSW01_19325 0.89 -0.4
996,971 + -0.4
996,971 + +1.1
996,975 - -0.3
996,978 + +0.1
996,979 - -0.0
996,985 - -1.4
997,129 + CSW01_19330 0.13 +0.0
997,131 + CSW01_19330 0.13 +0.1
997,153 + CSW01_19330 0.15 +0.3
997,191 + CSW01_19330 0.19 -0.5
997,195 - CSW01_19330 0.20 -0.4
997,203 + CSW01_19330 0.21 +0.9
997,203 + CSW01_19330 0.21 -1.0
997,211 - CSW01_19330 0.21 -0.4
997,224 + CSW01_19330 0.23 -0.1
997,232 - CSW01_19330 0.24 +1.7
997,232 - CSW01_19330 0.24 +0.9

Or see this region's nucleotide sequence