Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19295

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19290 and CSW01_19295 are separated by 112 nucleotidesCSW01_19295 and CSW01_19300 are separated by 58 nucleotidesCSW01_19300 and CSW01_19305 overlap by 91 nucleotides CSW01_19290: CSW01_19290 - amino acid ABC transporter permease, at 988,457 to 989,353 _19290 CSW01_19295: CSW01_19295 - phospho-sugar mutase, at 989,466 to 991,169 _19295 CSW01_19300: CSW01_19300 - polymer-forming cytoskeletal family protein, at 991,228 to 991,629 _19300 CSW01_19305: CSW01_19305 - M23 family peptidase, at 991,539 to 992,480 _19305 Position (kb) 989 990 991 992Strain fitness (log2 ratio) -1 0 1 2at 988.549 kb on + strand, within CSW01_19290at 988.565 kb on + strand, within CSW01_19290at 988.666 kb on - strand, within CSW01_19290at 988.705 kb on - strand, within CSW01_19290at 988.709 kb on + strand, within CSW01_19290at 988.717 kb on - strand, within CSW01_19290at 988.748 kb on - strand, within CSW01_19290at 988.813 kb on - strand, within CSW01_19290at 988.850 kb on - strand, within CSW01_19290at 988.895 kb on + strand, within CSW01_19290at 988.914 kb on + strand, within CSW01_19290at 988.924 kb on + strand, within CSW01_19290at 988.981 kb on + strand, within CSW01_19290at 988.989 kb on - strand, within CSW01_19290at 989.146 kb on + strand, within CSW01_19290at 989.148 kb on + strand, within CSW01_19290at 989.156 kb on - strand, within CSW01_19290at 989.211 kb on - strand, within CSW01_19290at 989.297 kb on - strandat 989.297 kb on - strandat 989.306 kb on - strandat 989.307 kb on - strandat 989.681 kb on - strand, within CSW01_19295at 989.752 kb on + strand, within CSW01_19295at 989.766 kb on + strand, within CSW01_19295at 989.776 kb on + strand, within CSW01_19295at 989.893 kb on + strand, within CSW01_19295at 989.923 kb on + strand, within CSW01_19295at 990.028 kb on + strand, within CSW01_19295at 990.028 kb on + strand, within CSW01_19295at 990.028 kb on + strand, within CSW01_19295at 990.036 kb on - strand, within CSW01_19295at 990.036 kb on - strand, within CSW01_19295at 990.080 kb on + strand, within CSW01_19295at 990.117 kb on + strand, within CSW01_19295at 990.144 kb on + strand, within CSW01_19295at 990.163 kb on - strand, within CSW01_19295at 990.225 kb on - strand, within CSW01_19295at 990.235 kb on - strand, within CSW01_19295at 990.235 kb on - strand, within CSW01_19295at 990.244 kb on - strand, within CSW01_19295at 990.248 kb on + strand, within CSW01_19295at 990.302 kb on - strand, within CSW01_19295at 990.344 kb on + strand, within CSW01_19295at 990.348 kb on + strand, within CSW01_19295at 990.348 kb on + strand, within CSW01_19295at 990.495 kb on - strand, within CSW01_19295at 990.579 kb on + strand, within CSW01_19295at 990.662 kb on - strand, within CSW01_19295at 990.679 kb on - strand, within CSW01_19295at 990.681 kb on + strand, within CSW01_19295at 990.689 kb on - strand, within CSW01_19295at 990.689 kb on - strand, within CSW01_19295at 990.718 kb on - strand, within CSW01_19295at 990.813 kb on - strand, within CSW01_19295at 990.815 kb on + strand, within CSW01_19295at 990.820 kb on + strand, within CSW01_19295at 990.820 kb on + strand, within CSW01_19295at 990.823 kb on - strand, within CSW01_19295at 990.823 kb on - strand, within CSW01_19295at 990.828 kb on - strand, within CSW01_19295at 990.861 kb on - strand, within CSW01_19295at 990.900 kb on + strand, within CSW01_19295at 990.961 kb on + strand, within CSW01_19295at 990.976 kb on + strand, within CSW01_19295at 991.049 kb on + strandat 991.060 kb on + strandat 991.152 kb on + strandat 991.160 kb on - strandat 991.278 kb on + strand, within CSW01_19300at 991.286 kb on - strand, within CSW01_19300at 991.470 kb on + strand, within CSW01_19300at 991.478 kb on - strand, within CSW01_19300at 991.583 kb on + strandat 991.583 kb on + strandat 991.583 kb on + strandat 991.731 kb on + strand, within CSW01_19305at 991.739 kb on - strand, within CSW01_19305at 991.973 kb on - strand, within CSW01_19305at 992.022 kb on + strand, within CSW01_19305at 992.129 kb on + strand, within CSW01_19305

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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988,549 + CSW01_19290 0.10 -0.0
988,565 + CSW01_19290 0.12 -0.5
988,666 - CSW01_19290 0.23 +0.3
988,705 - CSW01_19290 0.28 +0.7
988,709 + CSW01_19290 0.28 +0.2
988,717 - CSW01_19290 0.29 +0.6
988,748 - CSW01_19290 0.32 +1.0
988,813 - CSW01_19290 0.40 +0.1
988,850 - CSW01_19290 0.44 +0.4
988,895 + CSW01_19290 0.49 +0.4
988,914 + CSW01_19290 0.51 +0.5
988,924 + CSW01_19290 0.52 -1.4
988,981 + CSW01_19290 0.58 -0.6
988,989 - CSW01_19290 0.59 -0.4
989,146 + CSW01_19290 0.77 +0.1
989,148 + CSW01_19290 0.77 +0.2
989,156 - CSW01_19290 0.78 -0.7
989,211 - CSW01_19290 0.84 +0.5
989,297 - -0.6
989,297 - -0.6
989,306 - +0.1
989,307 - -1.1
989,681 - CSW01_19295 0.13 -0.3
989,752 + CSW01_19295 0.17 -0.1
989,766 + CSW01_19295 0.18 -0.1
989,776 + CSW01_19295 0.18 -0.1
989,893 + CSW01_19295 0.25 +0.1
989,923 + CSW01_19295 0.27 +0.1
990,028 + CSW01_19295 0.33 +0.9
990,028 + CSW01_19295 0.33 -0.9
990,028 + CSW01_19295 0.33 -0.1
990,036 - CSW01_19295 0.33 +0.2
990,036 - CSW01_19295 0.33 -0.4
990,080 + CSW01_19295 0.36 +0.5
990,117 + CSW01_19295 0.38 +0.5
990,144 + CSW01_19295 0.40 +0.3
990,163 - CSW01_19295 0.41 -0.2
990,225 - CSW01_19295 0.45 -1.5
990,235 - CSW01_19295 0.45 +0.4
990,235 - CSW01_19295 0.45 -0.4
990,244 - CSW01_19295 0.46 -0.0
990,248 + CSW01_19295 0.46 +0.2
990,302 - CSW01_19295 0.49 +0.5
990,344 + CSW01_19295 0.52 -0.9
990,348 + CSW01_19295 0.52 -1.3
990,348 + CSW01_19295 0.52 +0.4
990,495 - CSW01_19295 0.60 -0.1
990,579 + CSW01_19295 0.65 +0.3
990,662 - CSW01_19295 0.70 -1.0
990,679 - CSW01_19295 0.71 -0.6
990,681 + CSW01_19295 0.71 -0.5
990,689 - CSW01_19295 0.72 +0.1
990,689 - CSW01_19295 0.72 -0.3
990,718 - CSW01_19295 0.73 -0.0
990,813 - CSW01_19295 0.79 -0.4
990,815 + CSW01_19295 0.79 +1.0
990,820 + CSW01_19295 0.79 +0.1
990,820 + CSW01_19295 0.79 -0.3
990,823 - CSW01_19295 0.80 -0.4
990,823 - CSW01_19295 0.80 -0.6
990,828 - CSW01_19295 0.80 +0.4
990,861 - CSW01_19295 0.82 +0.3
990,900 + CSW01_19295 0.84 +0.5
990,961 + CSW01_19295 0.88 -0.1
990,976 + CSW01_19295 0.89 -0.5
991,049 + -0.1
991,060 + -1.1
991,152 + -0.5
991,160 - +0.4
991,278 + CSW01_19300 0.12 +0.1
991,286 - CSW01_19300 0.14 +0.8
991,470 + CSW01_19300 0.60 +0.2
991,478 - CSW01_19300 0.62 +2.4
991,583 + +0.3
991,583 + -0.1
991,583 + +1.0
991,731 + CSW01_19305 0.20 +0.1
991,739 - CSW01_19305 0.21 +0.5
991,973 - CSW01_19305 0.46 +0.4
992,022 + CSW01_19305 0.51 -0.1
992,129 + CSW01_19305 0.63 +0.2

Or see this region's nucleotide sequence