Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18845

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18835 and CSW01_18840 are separated by 83 nucleotidesCSW01_18840 and CSW01_18845 are separated by 322 nucleotidesCSW01_18845 and CSW01_18850 are separated by 11 nucleotides CSW01_18835: CSW01_18835 - acyl-CoA thioesterase, at 890,471 to 890,959 _18835 CSW01_18840: CSW01_18840 - hypothetical protein, at 891,043 to 891,321 _18840 CSW01_18845: CSW01_18845 - maltose ABC transporter permease, at 891,644 to 892,534 _18845 CSW01_18850: CSW01_18850 - maltose ABC transporter permease MalF, at 892,546 to 894,120 _18850 Position (kb) 891 892 893Strain fitness (log2 ratio) -1 0 1 2at 890.750 kb on + strand, within CSW01_18835at 890.780 kb on + strand, within CSW01_18835at 890.961 kb on + strandat 890.981 kb on - strandat 891.053 kb on + strandat 891.109 kb on + strand, within CSW01_18840at 891.120 kb on + strand, within CSW01_18840at 891.120 kb on + strand, within CSW01_18840at 891.120 kb on + strand, within CSW01_18840at 891.128 kb on - strand, within CSW01_18840at 891.144 kb on + strand, within CSW01_18840at 891.301 kb on + strandat 891.301 kb on + strandat 891.309 kb on - strandat 891.309 kb on - strandat 891.334 kb on + strandat 891.334 kb on + strandat 891.334 kb on + strandat 891.334 kb on + strandat 891.334 kb on + strandat 891.334 kb on + strandat 891.342 kb on - strandat 891.450 kb on + strandat 891.458 kb on - strandat 891.506 kb on + strandat 891.681 kb on + strandat 891.689 kb on - strandat 891.723 kb on + strandat 891.723 kb on + strandat 891.723 kb on + strandat 891.731 kb on - strandat 891.731 kb on - strandat 891.804 kb on - strand, within CSW01_18845at 891.837 kb on - strand, within CSW01_18845at 891.924 kb on - strand, within CSW01_18845at 891.929 kb on - strand, within CSW01_18845at 891.948 kb on - strand, within CSW01_18845at 891.950 kb on + strand, within CSW01_18845at 891.958 kb on - strand, within CSW01_18845at 892.029 kb on - strand, within CSW01_18845at 892.088 kb on - strand, within CSW01_18845at 892.090 kb on + strand, within CSW01_18845at 892.090 kb on + strand, within CSW01_18845at 892.090 kb on + strand, within CSW01_18845at 892.127 kb on + strand, within CSW01_18845at 892.127 kb on + strand, within CSW01_18845at 892.135 kb on - strand, within CSW01_18845at 892.216 kb on - strand, within CSW01_18845at 892.363 kb on + strand, within CSW01_18845at 892.512 kb on + strandat 892.568 kb on - strandat 892.569 kb on + strandat 892.584 kb on + strandat 892.638 kb on - strandat 892.685 kb on - strandat 892.685 kb on - strandat 892.687 kb on - strandat 892.693 kb on - strandat 892.708 kb on - strand, within CSW01_18850at 892.708 kb on - strand, within CSW01_18850at 892.886 kb on + strand, within CSW01_18850at 892.923 kb on - strand, within CSW01_18850at 893.001 kb on - strand, within CSW01_18850at 893.033 kb on + strand, within CSW01_18850at 893.104 kb on + strand, within CSW01_18850at 893.122 kb on - strand, within CSW01_18850at 893.133 kb on - strand, within CSW01_18850at 893.146 kb on - strand, within CSW01_18850at 893.172 kb on + strand, within CSW01_18850at 893.172 kb on + strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.341 kb on - strand, within CSW01_18850at 893.436 kb on + strand, within CSW01_18850at 893.458 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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890,750 + CSW01_18835 0.57 +1.2
890,780 + CSW01_18835 0.63 -0.7
890,961 + -0.3
890,981 - +0.3
891,053 + -0.7
891,109 + CSW01_18840 0.24 +0.2
891,120 + CSW01_18840 0.28 +1.3
891,120 + CSW01_18840 0.28 +0.0
891,120 + CSW01_18840 0.28 +0.2
891,128 - CSW01_18840 0.30 +0.8
891,144 + CSW01_18840 0.36 +0.9
891,301 + -1.0
891,301 + +0.6
891,309 - -0.0
891,309 - -0.4
891,334 + +1.5
891,334 + +0.4
891,334 + -0.1
891,334 + -0.0
891,334 + -0.2
891,334 + +0.8
891,342 - +0.6
891,450 + -0.5
891,458 - +0.3
891,506 + +1.8
891,681 + +1.3
891,689 - +0.8
891,723 + +0.7
891,723 + +0.5
891,723 + +0.2
891,731 - +0.1
891,731 - +0.8
891,804 - CSW01_18845 0.18 +0.1
891,837 - CSW01_18845 0.22 +0.3
891,924 - CSW01_18845 0.31 +0.8
891,929 - CSW01_18845 0.32 -0.5
891,948 - CSW01_18845 0.34 +0.1
891,950 + CSW01_18845 0.34 +0.6
891,958 - CSW01_18845 0.35 +0.2
892,029 - CSW01_18845 0.43 +0.5
892,088 - CSW01_18845 0.50 +0.3
892,090 + CSW01_18845 0.50 +0.4
892,090 + CSW01_18845 0.50 +0.8
892,090 + CSW01_18845 0.50 -0.2
892,127 + CSW01_18845 0.54 +0.2
892,127 + CSW01_18845 0.54 +0.3
892,135 - CSW01_18845 0.55 +0.3
892,216 - CSW01_18845 0.64 +0.3
892,363 + CSW01_18845 0.81 +0.7
892,512 + +0.2
892,568 - +0.7
892,569 + +1.1
892,584 + -0.1
892,638 - -0.3
892,685 - -0.5
892,685 - +0.4
892,687 - -0.2
892,693 - +0.2
892,708 - CSW01_18850 0.10 +0.4
892,708 - CSW01_18850 0.10 -0.1
892,886 + CSW01_18850 0.22 +0.1
892,923 - CSW01_18850 0.24 -0.1
893,001 - CSW01_18850 0.29 +0.8
893,033 + CSW01_18850 0.31 +0.4
893,104 + CSW01_18850 0.35 +0.3
893,122 - CSW01_18850 0.37 +0.0
893,133 - CSW01_18850 0.37 +0.5
893,146 - CSW01_18850 0.38 +0.1
893,172 + CSW01_18850 0.40 -0.1
893,172 + CSW01_18850 0.40 -0.3
893,180 - CSW01_18850 0.40 +1.0
893,180 - CSW01_18850 0.40 +1.2
893,180 - CSW01_18850 0.40 -0.0
893,180 - CSW01_18850 0.40 -0.9
893,180 - CSW01_18850 0.40 -0.3
893,182 + CSW01_18850 0.40 +0.7
893,182 + CSW01_18850 0.40 +0.5
893,182 + CSW01_18850 0.40 +0.1
893,182 + CSW01_18850 0.40 +1.6
893,182 + CSW01_18850 0.40 +0.5
893,182 + CSW01_18850 0.40 +0.4
893,182 + CSW01_18850 0.40 -0.9
893,182 + CSW01_18850 0.40 -0.0
893,190 - CSW01_18850 0.41 +2.0
893,190 - CSW01_18850 0.41 +0.4
893,190 - CSW01_18850 0.41 -0.2
893,190 - CSW01_18850 0.41 -0.4
893,341 - CSW01_18850 0.50 +0.1
893,436 + CSW01_18850 0.57 -1.1
893,458 + CSW01_18850 0.58 +0.3
893,459 + CSW01_18850 0.58 +0.5
893,459 + CSW01_18850 0.58 +1.1
893,459 + CSW01_18850 0.58 +0.7
893,459 + CSW01_18850 0.58 +0.7
893,467 - CSW01_18850 0.58 +2.1
893,467 - CSW01_18850 0.58 +0.5
893,467 - CSW01_18850 0.58 -0.2
893,467 - CSW01_18850 0.58 -0.0

Or see this region's nucleotide sequence