Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18760

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18755 and CSW01_18760 are separated by 562 nucleotidesCSW01_18760 and CSW01_18765 are separated by 62 nucleotides CSW01_18755: CSW01_18755 - flavodoxin, at 874,650 to 876,467 _18755 CSW01_18760: CSW01_18760 - dihydroorotase, at 877,030 to 878,058 _18760 CSW01_18765: CSW01_18765 - AraC family transcriptional regulator, at 878,121 to 879,218 _18765 Position (kb) 877 878 879Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 876.104 kb on - strand, within CSW01_18755at 876.104 kb on - strand, within CSW01_18755at 876.159 kb on + strand, within CSW01_18755at 876.181 kb on + strand, within CSW01_18755at 876.240 kb on + strand, within CSW01_18755at 876.241 kb on + strand, within CSW01_18755at 876.241 kb on + strand, within CSW01_18755at 876.249 kb on - strand, within CSW01_18755at 876.272 kb on - strand, within CSW01_18755at 876.294 kb on - strandat 876.334 kb on - strandat 876.369 kb on + strandat 876.377 kb on - strandat 876.438 kb on - strandat 876.651 kb on + strandat 876.651 kb on + strandat 876.651 kb on + strandat 876.681 kb on + strandat 876.796 kb on + strandat 876.819 kb on + strandat 876.842 kb on + strandat 876.867 kb on - strandat 876.872 kb on - strandat 876.886 kb on + strandat 876.897 kb on + strandat 876.905 kb on - strandat 877.051 kb on + strandat 877.090 kb on + strandat 877.103 kb on - strandat 877.169 kb on + strand, within CSW01_18760at 877.180 kb on - strand, within CSW01_18760at 877.226 kb on - strand, within CSW01_18760at 877.238 kb on - strand, within CSW01_18760at 877.274 kb on - strand, within CSW01_18760at 877.291 kb on + strand, within CSW01_18760at 877.323 kb on + strand, within CSW01_18760at 877.323 kb on + strand, within CSW01_18760at 877.331 kb on - strand, within CSW01_18760at 877.482 kb on - strand, within CSW01_18760at 877.564 kb on + strand, within CSW01_18760at 877.564 kb on + strand, within CSW01_18760at 877.564 kb on + strand, within CSW01_18760at 877.572 kb on - strand, within CSW01_18760at 877.572 kb on - strand, within CSW01_18760at 877.588 kb on + strand, within CSW01_18760at 877.607 kb on + strand, within CSW01_18760at 877.637 kb on - strand, within CSW01_18760at 877.658 kb on - strand, within CSW01_18760at 877.671 kb on + strand, within CSW01_18760at 877.787 kb on - strand, within CSW01_18760at 877.824 kb on - strand, within CSW01_18760at 877.828 kb on + strand, within CSW01_18760at 877.835 kb on - strand, within CSW01_18760at 877.838 kb on + strand, within CSW01_18760at 877.840 kb on + strand, within CSW01_18760at 877.845 kb on - strand, within CSW01_18760at 877.845 kb on - strand, within CSW01_18760at 877.845 kb on - strand, within CSW01_18760at 877.957 kb on - strandat 877.957 kb on - strandat 877.976 kb on - strandat 878.022 kb on - strandat 878.050 kb on + strandat 878.252 kb on + strand, within CSW01_18765at 878.252 kb on + strand, within CSW01_18765at 878.265 kb on - strand, within CSW01_18765at 878.353 kb on + strand, within CSW01_18765at 878.375 kb on + strand, within CSW01_18765at 878.375 kb on + strand, within CSW01_18765at 878.383 kb on - strand, within CSW01_18765at 878.385 kb on + strand, within CSW01_18765at 878.388 kb on - strand, within CSW01_18765at 878.396 kb on + strand, within CSW01_18765at 878.467 kb on + strand, within CSW01_18765at 878.498 kb on + strand, within CSW01_18765at 878.577 kb on + strand, within CSW01_18765at 878.701 kb on - strand, within CSW01_18765at 878.757 kb on - strand, within CSW01_18765at 878.784 kb on - strand, within CSW01_18765at 878.805 kb on - strand, within CSW01_18765at 878.868 kb on + strand, within CSW01_18765at 878.882 kb on - strand, within CSW01_18765at 878.897 kb on + strand, within CSW01_18765at 878.898 kb on - strand, within CSW01_18765at 878.933 kb on + strand, within CSW01_18765at 878.934 kb on + strand, within CSW01_18765at 878.941 kb on - strand, within CSW01_18765at 878.941 kb on - strand, within CSW01_18765at 878.941 kb on - strand, within CSW01_18765at 878.946 kb on - strand, within CSW01_18765at 878.986 kb on + strand, within CSW01_18765at 878.994 kb on - strand, within CSW01_18765at 878.996 kb on + strand, within CSW01_18765at 878.996 kb on + strand, within CSW01_18765at 878.999 kb on - strand, within CSW01_18765at 878.999 kb on - strand, within CSW01_18765at 879.034 kb on + strand, within CSW01_18765

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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876,104 - CSW01_18755 0.80 -0.2
876,104 - CSW01_18755 0.80 -0.1
876,159 + CSW01_18755 0.83 -1.0
876,181 + CSW01_18755 0.84 +0.3
876,240 + CSW01_18755 0.87 -0.2
876,241 + CSW01_18755 0.88 +2.6
876,241 + CSW01_18755 0.88 +0.1
876,249 - CSW01_18755 0.88 +0.9
876,272 - CSW01_18755 0.89 -0.4
876,294 - +0.2
876,334 - +0.5
876,369 + -0.1
876,377 - -1.8
876,438 - -0.2
876,651 + -0.6
876,651 + +0.5
876,651 + +0.4
876,681 + -1.0
876,796 + +0.6
876,819 + -0.5
876,842 + +0.2
876,867 - +1.1
876,872 - -0.0
876,886 + -0.8
876,897 + -1.1
876,905 - +0.3
877,051 + -0.8
877,090 + -3.2
877,103 - -2.0
877,169 + CSW01_18760 0.14 -0.2
877,180 - CSW01_18760 0.15 -1.1
877,226 - CSW01_18760 0.19 -3.0
877,238 - CSW01_18760 0.20 -1.1
877,274 - CSW01_18760 0.24 +0.3
877,291 + CSW01_18760 0.25 -1.0
877,323 + CSW01_18760 0.28 -1.9
877,323 + CSW01_18760 0.28 -0.6
877,331 - CSW01_18760 0.29 -1.0
877,482 - CSW01_18760 0.44 -1.4
877,564 + CSW01_18760 0.52 -1.3
877,564 + CSW01_18760 0.52 -1.7
877,564 + CSW01_18760 0.52 -1.6
877,572 - CSW01_18760 0.53 -1.9
877,572 - CSW01_18760 0.53 +0.3
877,588 + CSW01_18760 0.54 -0.2
877,607 + CSW01_18760 0.56 -1.9
877,637 - CSW01_18760 0.59 -2.0
877,658 - CSW01_18760 0.61 -1.6
877,671 + CSW01_18760 0.62 -1.0
877,787 - CSW01_18760 0.74 -2.5
877,824 - CSW01_18760 0.77 -1.9
877,828 + CSW01_18760 0.78 -0.7
877,835 - CSW01_18760 0.78 -0.5
877,838 + CSW01_18760 0.79 -1.8
877,840 + CSW01_18760 0.79 -1.2
877,845 - CSW01_18760 0.79 -1.1
877,845 - CSW01_18760 0.79 -1.8
877,845 - CSW01_18760 0.79 -1.0
877,957 - -2.7
877,957 - -3.3
877,976 - -1.2
878,022 - -0.9
878,050 + -0.2
878,252 + CSW01_18765 0.12 -1.2
878,252 + CSW01_18765 0.12 +0.2
878,265 - CSW01_18765 0.13 +0.1
878,353 + CSW01_18765 0.21 +0.6
878,375 + CSW01_18765 0.23 +0.3
878,375 + CSW01_18765 0.23 +0.7
878,383 - CSW01_18765 0.24 +0.6
878,385 + CSW01_18765 0.24 +0.4
878,388 - CSW01_18765 0.24 +0.8
878,396 + CSW01_18765 0.25 +0.5
878,467 + CSW01_18765 0.32 -0.2
878,498 + CSW01_18765 0.34 +0.0
878,577 + CSW01_18765 0.42 +0.2
878,701 - CSW01_18765 0.53 -0.5
878,757 - CSW01_18765 0.58 +0.1
878,784 - CSW01_18765 0.60 +0.2
878,805 - CSW01_18765 0.62 -0.4
878,868 + CSW01_18765 0.68 +0.5
878,882 - CSW01_18765 0.69 +0.4
878,897 + CSW01_18765 0.71 +0.1
878,898 - CSW01_18765 0.71 +1.4
878,933 + CSW01_18765 0.74 -0.3
878,934 + CSW01_18765 0.74 +0.0
878,941 - CSW01_18765 0.75 -0.9
878,941 - CSW01_18765 0.75 -0.6
878,941 - CSW01_18765 0.75 -0.4
878,946 - CSW01_18765 0.75 +0.4
878,986 + CSW01_18765 0.79 -0.1
878,994 - CSW01_18765 0.80 +1.4
878,996 + CSW01_18765 0.80 +0.5
878,996 + CSW01_18765 0.80 -0.1
878,999 - CSW01_18765 0.80 +0.2
878,999 - CSW01_18765 0.80 -0.2
879,034 + CSW01_18765 0.83 +0.3

Or see this region's nucleotide sequence