Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17405 and CSW01_17410 are separated by 109 nucleotides CSW01_17410 and CSW01_17415 are separated by 4 nucleotides CSW01_17415 and CSW01_17420 are separated by 16 nucleotides CSW01_17420 and CSW01_17425 are separated by 154 nucleotides CSW01_17425 and CSW01_17430 are separated by 65 nucleotides
CSW01_17405: CSW01_17405 - efflux RND transporter periplasmic adaptor subunit, at 574,033 to 575,037
_17405
CSW01_17410: CSW01_17410 - transporter, at 575,147 to 575,611
_17410
CSW01_17415: CSW01_17415 - hypothetical protein, at 575,616 to 576,035
_17415
CSW01_17420: CSW01_17420 - transcriptional regulator, at 576,052 to 576,369
_17420
CSW01_17425: CSW01_17425 - DUF2892 domain-containing protein, at 576,524 to 576,709
_17425
CSW01_17430: CSW01_17430 - NADH oxidase, at 576,775 to 578,478
_17430
Position (kb) 575
576
577 Strain fitness (log2 ratio) -1
0
1
2 at 574.703 kb on + strand, within CSW01_17405 at 574.711 kb on - strand, within CSW01_17405 at 574.863 kb on + strand, within CSW01_17405 at 574.871 kb on - strand, within CSW01_17405 at 574.903 kb on + strand, within CSW01_17405 at 574.905 kb on + strand, within CSW01_17405 at 574.913 kb on - strand, within CSW01_17405 at 574.913 kb on - strand, within CSW01_17405 at 574.913 kb on - strand, within CSW01_17405 at 574.913 kb on - strand, within CSW01_17405 at 574.980 kb on - strand at 575.110 kb on - strand at 575.126 kb on - strand at 575.136 kb on - strand at 575.394 kb on + strand, within CSW01_17410 at 575.402 kb on - strand, within CSW01_17410 at 575.476 kb on + strand, within CSW01_17410 at 575.484 kb on - strand, within CSW01_17410 at 575.632 kb on - strand at 575.634 kb on + strand at 575.667 kb on + strand, within CSW01_17415 at 575.774 kb on - strand, within CSW01_17415 at 575.809 kb on - strand, within CSW01_17415 at 575.827 kb on - strand, within CSW01_17415 at 575.834 kb on + strand, within CSW01_17415 at 575.835 kb on - strand, within CSW01_17415 at 575.842 kb on - strand, within CSW01_17415 at 575.842 kb on - strand, within CSW01_17415 at 575.842 kb on - strand, within CSW01_17415 at 575.844 kb on + strand, within CSW01_17415 at 575.844 kb on + strand, within CSW01_17415 at 575.844 kb on + strand, within CSW01_17415 at 575.985 kb on - strand, within CSW01_17415 at 576.001 kb on - strand at 576.121 kb on - strand, within CSW01_17420 at 576.171 kb on + strand, within CSW01_17420 at 576.171 kb on + strand, within CSW01_17420 at 576.171 kb on + strand, within CSW01_17420 at 576.171 kb on + strand, within CSW01_17420 at 576.179 kb on - strand, within CSW01_17420 at 576.179 kb on - strand, within CSW01_17420 at 576.179 kb on - strand, within CSW01_17420 at 576.212 kb on - strand, within CSW01_17420 at 576.222 kb on - strand, within CSW01_17420 at 576.225 kb on + strand, within CSW01_17420 at 576.251 kb on + strand, within CSW01_17420 at 576.556 kb on - strand, within CSW01_17425 at 576.566 kb on + strand, within CSW01_17425 at 576.574 kb on - strand, within CSW01_17425 at 576.579 kb on - strand, within CSW01_17425 at 576.670 kb on - strand, within CSW01_17425 at 576.723 kb on - strand at 576.723 kb on - strand at 576.740 kb on + strand at 576.768 kb on - strand at 576.774 kb on - strand at 576.808 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B remove 574,703 + CSW01_17405 0.67 -0.3 574,711 - CSW01_17405 0.67 -0.4 574,863 + CSW01_17405 0.83 +0.2 574,871 - CSW01_17405 0.83 +1.3 574,903 + CSW01_17405 0.87 +1.2 574,905 + CSW01_17405 0.87 +0.3 574,913 - CSW01_17405 0.88 +0.6 574,913 - CSW01_17405 0.88 +1.2 574,913 - CSW01_17405 0.88 +0.6 574,913 - CSW01_17405 0.88 +1.0 574,980 - +0.1 575,110 - +1.0 575,126 - -0.0 575,136 - -0.3 575,394 + CSW01_17410 0.53 +0.4 575,402 - CSW01_17410 0.55 +0.6 575,476 + CSW01_17410 0.71 -1.1 575,484 - CSW01_17410 0.72 -0.2 575,632 - +0.3 575,634 + -0.4 575,667 + CSW01_17415 0.12 -0.5 575,774 - CSW01_17415 0.38 +0.2 575,809 - CSW01_17415 0.46 -0.2 575,827 - CSW01_17415 0.50 -0.1 575,834 + CSW01_17415 0.52 -0.1 575,835 - CSW01_17415 0.52 -0.1 575,842 - CSW01_17415 0.54 +0.6 575,842 - CSW01_17415 0.54 +0.4 575,842 - CSW01_17415 0.54 +0.5 575,844 + CSW01_17415 0.54 +0.2 575,844 + CSW01_17415 0.54 -0.2 575,844 + CSW01_17415 0.54 +0.8 575,985 - CSW01_17415 0.88 -0.3 576,001 - +0.4 576,121 - CSW01_17420 0.22 +0.1 576,171 + CSW01_17420 0.37 +0.6 576,171 + CSW01_17420 0.37 +0.4 576,171 + CSW01_17420 0.37 -0.5 576,171 + CSW01_17420 0.37 +0.6 576,179 - CSW01_17420 0.40 -0.4 576,179 - CSW01_17420 0.40 +0.4 576,179 - CSW01_17420 0.40 +0.5 576,212 - CSW01_17420 0.50 +2.3 576,222 - CSW01_17420 0.53 +1.3 576,225 + CSW01_17420 0.54 -0.2 576,251 + CSW01_17420 0.63 -0.6 576,556 - CSW01_17425 0.17 -0.4 576,566 + CSW01_17425 0.23 -0.1 576,574 - CSW01_17425 0.27 +0.5 576,579 - CSW01_17425 0.30 +0.7 576,670 - CSW01_17425 0.78 -0.5 576,723 - +0.2 576,723 - +0.3 576,740 + +0.4 576,768 - -0.2 576,774 - +0.5 576,808 + +0.2
Or see this region's nucleotide sequence