Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17085 and CSW01_17090 are separated by 150 nucleotides CSW01_17090 and CSW01_17095 are separated by 206 nucleotides
CSW01_17085: CSW01_17085 - D-alanine--D-alanine ligase, at 507,340 to 508,344
_17085
CSW01_17090: CSW01_17090 - SPOR domain-containing protein, at 508,495 to 509,082
_17090
CSW01_17095: CSW01_17095 - protein acetyltransferase, at 509,289 to 511,970
_17095
Position (kb) 508
509
510 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 508.539 kb on + strand at 508.809 kb on + strand, within CSW01_17090 at 508.826 kb on + strand, within CSW01_17090 at 508.826 kb on + strand, within CSW01_17090 at 508.834 kb on - strand, within CSW01_17090 at 508.834 kb on - strand, within CSW01_17090 at 508.908 kb on - strand, within CSW01_17090 at 508.920 kb on + strand, within CSW01_17090 at 508.993 kb on + strand, within CSW01_17090 at 509.008 kb on - strand, within CSW01_17090 at 509.016 kb on - strand, within CSW01_17090 at 509.097 kb on - strand at 509.163 kb on - strand at 509.163 kb on - strand at 509.223 kb on - strand at 509.223 kb on - strand at 509.285 kb on + strand at 509.294 kb on - strand at 509.317 kb on - strand at 509.429 kb on + strand at 509.437 kb on - strand at 509.599 kb on + strand, within CSW01_17095 at 509.599 kb on + strand, within CSW01_17095 at 509.605 kb on - strand, within CSW01_17095 at 509.612 kb on + strand, within CSW01_17095 at 509.633 kb on + strand, within CSW01_17095 at 509.633 kb on + strand, within CSW01_17095 at 509.641 kb on - strand, within CSW01_17095 at 509.653 kb on - strand, within CSW01_17095 at 509.676 kb on + strand, within CSW01_17095 at 509.688 kb on + strand, within CSW01_17095 at 509.791 kb on - strand, within CSW01_17095 at 509.791 kb on - strand, within CSW01_17095 at 509.896 kb on - strand, within CSW01_17095 at 509.896 kb on - strand, within CSW01_17095 at 509.896 kb on - strand, within CSW01_17095 at 510.044 kb on + strand, within CSW01_17095
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B remove 508,539 + -0.5 508,809 + CSW01_17090 0.53 -0.5 508,826 + CSW01_17090 0.56 -0.9 508,826 + CSW01_17090 0.56 -0.6 508,834 - CSW01_17090 0.58 -0.4 508,834 - CSW01_17090 0.58 -0.4 508,908 - CSW01_17090 0.70 +1.9 508,920 + CSW01_17090 0.72 -0.5 508,993 + CSW01_17090 0.85 -0.4 509,008 - CSW01_17090 0.87 -0.1 509,016 - CSW01_17090 0.89 -1.1 509,097 - -1.2 509,163 - +0.9 509,163 - -0.6 509,223 - -0.8 509,223 - +2.0 509,285 + +0.4 509,294 - -0.5 509,317 - +1.0 509,429 + +0.4 509,437 - -0.3 509,599 + CSW01_17095 0.12 -0.3 509,599 + CSW01_17095 0.12 +0.7 509,605 - CSW01_17095 0.12 +3.9 509,612 + CSW01_17095 0.12 +0.3 509,633 + CSW01_17095 0.13 +0.0 509,633 + CSW01_17095 0.13 +1.8 509,641 - CSW01_17095 0.13 +0.6 509,653 - CSW01_17095 0.14 -0.0 509,676 + CSW01_17095 0.14 +1.0 509,688 + CSW01_17095 0.15 +0.9 509,791 - CSW01_17095 0.19 +1.0 509,791 - CSW01_17095 0.19 -0.1 509,896 - CSW01_17095 0.23 +0.3 509,896 - CSW01_17095 0.23 +0.9 509,896 - CSW01_17095 0.23 +1.6 510,044 + CSW01_17095 0.28 +0.9
Or see this region's nucleotide sequence