Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15370

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15365 and CSW01_15370 are separated by 520 nucleotidesCSW01_15370 and CSW01_15375 overlap by 1 nucleotidesCSW01_15375 and CSW01_15380 are separated by 1 nucleotides CSW01_15365: CSW01_15365 - hypothetical protein, at 302,482 to 303,705 _15365 CSW01_15370: CSW01_15370 - hypothetical protein, at 304,226 to 304,756 _15370 CSW01_15375: CSW01_15375 - hypothetical protein, at 304,756 to 305,427 _15375 CSW01_15380: CSW01_15380 - hypothetical protein, at 305,429 to 305,779 _15380 Position (kb) 304 305Strain fitness (log2 ratio) -1 0 1 2at 303.230 kb on - strand, within CSW01_15365at 303.237 kb on + strand, within CSW01_15365at 303.253 kb on - strand, within CSW01_15365at 303.256 kb on + strand, within CSW01_15365at 303.256 kb on + strand, within CSW01_15365at 303.264 kb on - strand, within CSW01_15365at 303.280 kb on + strand, within CSW01_15365at 303.280 kb on + strand, within CSW01_15365at 303.280 kb on + strand, within CSW01_15365at 303.280 kb on + strand, within CSW01_15365at 303.288 kb on - strand, within CSW01_15365at 303.288 kb on - strand, within CSW01_15365at 303.319 kb on - strand, within CSW01_15365at 303.319 kb on - strand, within CSW01_15365at 303.325 kb on + strand, within CSW01_15365at 303.365 kb on - strand, within CSW01_15365at 303.365 kb on - strand, within CSW01_15365at 303.365 kb on - strand, within CSW01_15365at 303.411 kb on - strand, within CSW01_15365at 303.539 kb on - strand, within CSW01_15365at 303.624 kb on - strandat 303.630 kb on + strandat 303.697 kb on + strandat 303.781 kb on + strandat 303.781 kb on + strandat 303.789 kb on - strandat 303.791 kb on + strandat 303.791 kb on + strandat 303.799 kb on - strandat 303.823 kb on - strandat 303.834 kb on + strandat 303.834 kb on - strandat 303.859 kb on + strandat 303.930 kb on - strandat 303.948 kb on - strandat 303.975 kb on + strandat 303.975 kb on + strandat 303.982 kb on + strandat 303.983 kb on - strandat 304.358 kb on - strand, within CSW01_15370at 304.370 kb on + strand, within CSW01_15370at 304.390 kb on - strand, within CSW01_15370at 304.393 kb on - strand, within CSW01_15370at 304.518 kb on + strand, within CSW01_15370at 304.518 kb on + strand, within CSW01_15370at 304.526 kb on - strand, within CSW01_15370at 304.526 kb on - strand, within CSW01_15370at 304.526 kb on - strand, within CSW01_15370at 304.530 kb on + strand, within CSW01_15370at 304.550 kb on + strand, within CSW01_15370at 304.558 kb on - strand, within CSW01_15370at 304.571 kb on - strand, within CSW01_15370at 304.610 kb on + strand, within CSW01_15370at 304.618 kb on - strand, within CSW01_15370at 304.618 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.653 kb on - strand, within CSW01_15370at 304.684 kb on - strand, within CSW01_15370at 304.771 kb on - strandat 304.778 kb on - strandat 304.790 kb on + strandat 304.955 kb on - strand, within CSW01_15375at 304.962 kb on + strand, within CSW01_15375at 305.004 kb on - strand, within CSW01_15375at 305.024 kb on - strand, within CSW01_15375at 305.194 kb on + strand, within CSW01_15375at 305.202 kb on - strand, within CSW01_15375at 305.202 kb on - strand, within CSW01_15375at 305.202 kb on - strand, within CSW01_15375at 305.253 kb on - strand, within CSW01_15375at 305.253 kb on - strand, within CSW01_15375at 305.286 kb on + strand, within CSW01_15375at 305.306 kb on + strand, within CSW01_15375at 305.313 kb on - strand, within CSW01_15375at 305.314 kb on - strand, within CSW01_15375at 305.326 kb on + strand, within CSW01_15375at 305.456 kb on + strandat 305.473 kb on - strand, within CSW01_15380at 305.473 kb on - strand, within CSW01_15380at 305.496 kb on - strand, within CSW01_15380at 305.569 kb on + strand, within CSW01_15380at 305.574 kb on + strand, within CSW01_15380at 305.577 kb on - strand, within CSW01_15380at 305.582 kb on + strand, within CSW01_15380at 305.590 kb on - strand, within CSW01_15380at 305.612 kb on + strand, within CSW01_15380at 305.640 kb on - strand, within CSW01_15380at 305.671 kb on - strand, within CSW01_15380

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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303,230 - CSW01_15365 0.61 +0.3
303,237 + CSW01_15365 0.62 +0.5
303,253 - CSW01_15365 0.63 +0.5
303,256 + CSW01_15365 0.63 +0.2
303,256 + CSW01_15365 0.63 -0.6
303,264 - CSW01_15365 0.64 +0.6
303,280 + CSW01_15365 0.65 +0.4
303,280 + CSW01_15365 0.65 +0.6
303,280 + CSW01_15365 0.65 +0.1
303,280 + CSW01_15365 0.65 +0.6
303,288 - CSW01_15365 0.66 -0.3
303,288 - CSW01_15365 0.66 +1.8
303,319 - CSW01_15365 0.68 +0.9
303,319 - CSW01_15365 0.68 +1.0
303,325 + CSW01_15365 0.69 +0.4
303,365 - CSW01_15365 0.72 +1.5
303,365 - CSW01_15365 0.72 +0.5
303,365 - CSW01_15365 0.72 +0.1
303,411 - CSW01_15365 0.76 -0.5
303,539 - CSW01_15365 0.86 +1.1
303,624 - +0.7
303,630 + -0.2
303,697 + +0.1
303,781 + +0.4
303,781 + +0.1
303,789 - +0.8
303,791 + +0.5
303,791 + +1.5
303,799 - +0.8
303,823 - +0.8
303,834 + -0.8
303,834 - -0.3
303,859 + +0.5
303,930 - +0.2
303,948 - +0.6
303,975 + +0.1
303,975 + -0.3
303,982 + +0.1
303,983 - +1.6
304,358 - CSW01_15370 0.25 -0.0
304,370 + CSW01_15370 0.27 +0.2
304,390 - CSW01_15370 0.31 +0.8
304,393 - CSW01_15370 0.31 +1.3
304,518 + CSW01_15370 0.55 +1.0
304,518 + CSW01_15370 0.55 +0.1
304,526 - CSW01_15370 0.56 -0.4
304,526 - CSW01_15370 0.56 +0.2
304,526 - CSW01_15370 0.56 +0.1
304,530 + CSW01_15370 0.57 -0.6
304,550 + CSW01_15370 0.61 +1.1
304,558 - CSW01_15370 0.63 +1.3
304,571 - CSW01_15370 0.65 +1.0
304,610 + CSW01_15370 0.72 +0.0
304,618 - CSW01_15370 0.74 +2.2
304,618 - CSW01_15370 0.74 +0.4
304,640 - CSW01_15370 0.78 -0.1
304,640 - CSW01_15370 0.78 +0.2
304,640 - CSW01_15370 0.78 -0.2
304,640 - CSW01_15370 0.78 +1.3
304,653 - CSW01_15370 0.80 +0.3
304,684 - CSW01_15370 0.86 +0.1
304,771 - +1.9
304,778 - -0.0
304,790 + +0.1
304,955 - CSW01_15375 0.30 +0.7
304,962 + CSW01_15375 0.31 -0.0
305,004 - CSW01_15375 0.37 +0.3
305,024 - CSW01_15375 0.40 +0.2
305,194 + CSW01_15375 0.65 +0.7
305,202 - CSW01_15375 0.66 -0.1
305,202 - CSW01_15375 0.66 +0.7
305,202 - CSW01_15375 0.66 -0.2
305,253 - CSW01_15375 0.74 -0.1
305,253 - CSW01_15375 0.74 -0.3
305,286 + CSW01_15375 0.79 +0.2
305,306 + CSW01_15375 0.82 +1.4
305,313 - CSW01_15375 0.83 +0.1
305,314 - CSW01_15375 0.83 +0.7
305,326 + CSW01_15375 0.85 +0.2
305,456 + +0.4
305,473 - CSW01_15380 0.13 -0.1
305,473 - CSW01_15380 0.13 +1.2
305,496 - CSW01_15380 0.19 +0.4
305,569 + CSW01_15380 0.40 +2.3
305,574 + CSW01_15380 0.41 +0.1
305,577 - CSW01_15380 0.42 +0.9
305,582 + CSW01_15380 0.44 +1.5
305,590 - CSW01_15380 0.46 +1.1
305,612 + CSW01_15380 0.52 +0.9
305,640 - CSW01_15380 0.60 -0.2
305,671 - CSW01_15380 0.69 +0.2

Or see this region's nucleotide sequence