Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14910

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14905 and CSW01_14910 are separated by 143 nucleotidesCSW01_14910 and CSW01_14915 are separated by 358 nucleotidesCSW01_14915 and CSW01_14920 are separated by 387 nucleotides CSW01_14905: CSW01_14905 - flavohemoprotein, at 202,116 to 203,300 _14905 CSW01_14910: CSW01_14910 - cold-shock protein, at 203,444 to 203,653 _14910 CSW01_14915: CSW01_14915 - ribosome alternative rescue factor ArfA, at 204,012 to 204,239 _14915 CSW01_14920: CSW01_14920 - NADH:ubiquinone oxidoreductase, at 204,627 to 205,004 _14920 Position (kb) 203 204Strain fitness (log2 ratio) -1 0 1 2at 202.453 kb on + strand, within CSW01_14905at 202.453 kb on + strand, within CSW01_14905at 202.460 kb on - strand, within CSW01_14905at 202.475 kb on + strand, within CSW01_14905at 202.476 kb on + strand, within CSW01_14905at 202.483 kb on - strand, within CSW01_14905at 202.532 kb on + strand, within CSW01_14905at 202.554 kb on + strand, within CSW01_14905at 202.602 kb on + strand, within CSW01_14905at 202.627 kb on + strand, within CSW01_14905at 202.627 kb on + strand, within CSW01_14905at 202.659 kb on + strand, within CSW01_14905at 202.677 kb on + strand, within CSW01_14905at 202.685 kb on - strand, within CSW01_14905at 202.823 kb on - strand, within CSW01_14905at 202.833 kb on + strand, within CSW01_14905at 202.833 kb on + strand, within CSW01_14905at 202.852 kb on - strand, within CSW01_14905at 202.861 kb on + strand, within CSW01_14905at 202.869 kb on - strand, within CSW01_14905at 202.869 kb on - strand, within CSW01_14905at 202.962 kb on + strand, within CSW01_14905at 202.962 kb on + strand, within CSW01_14905at 202.970 kb on - strand, within CSW01_14905at 202.978 kb on - strand, within CSW01_14905at 203.023 kb on - strand, within CSW01_14905at 203.055 kb on + strand, within CSW01_14905at 203.083 kb on - strand, within CSW01_14905at 203.099 kb on - strand, within CSW01_14905at 203.190 kb on + strandat 203.200 kb on + strandat 203.200 kb on + strandat 203.276 kb on - strandat 203.295 kb on + strandat 203.303 kb on - strandat 203.303 kb on - strandat 203.550 kb on + strand, within CSW01_14910at 203.550 kb on + strand, within CSW01_14910at 203.728 kb on + strandat 203.802 kb on + strandat 203.802 kb on + strandat 203.802 kb on + strandat 203.823 kb on - strandat 203.996 kb on + strandat 203.999 kb on - strandat 204.047 kb on - strand, within CSW01_14915at 204.108 kb on + strand, within CSW01_14915at 204.205 kb on + strand, within CSW01_14915at 204.255 kb on + strandat 204.263 kb on - strandat 204.265 kb on + strandat 204.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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202,453 + CSW01_14905 0.28 -0.8
202,453 + CSW01_14905 0.28 +1.5
202,460 - CSW01_14905 0.29 +0.9
202,475 + CSW01_14905 0.30 +0.6
202,476 + CSW01_14905 0.30 -0.3
202,483 - CSW01_14905 0.31 -0.4
202,532 + CSW01_14905 0.35 +0.6
202,554 + CSW01_14905 0.37 +0.5
202,602 + CSW01_14905 0.41 +2.1
202,627 + CSW01_14905 0.43 +0.2
202,627 + CSW01_14905 0.43 -0.2
202,659 + CSW01_14905 0.46 -0.2
202,677 + CSW01_14905 0.47 -0.3
202,685 - CSW01_14905 0.48 +0.6
202,823 - CSW01_14905 0.60 +0.2
202,833 + CSW01_14905 0.61 +0.4
202,833 + CSW01_14905 0.61 +0.4
202,852 - CSW01_14905 0.62 -0.6
202,861 + CSW01_14905 0.63 +1.4
202,869 - CSW01_14905 0.64 +0.7
202,869 - CSW01_14905 0.64 +0.5
202,962 + CSW01_14905 0.71 +0.1
202,962 + CSW01_14905 0.71 +1.0
202,970 - CSW01_14905 0.72 +2.3
202,978 - CSW01_14905 0.73 +0.3
203,023 - CSW01_14905 0.77 -0.2
203,055 + CSW01_14905 0.79 +0.6
203,083 - CSW01_14905 0.82 -0.4
203,099 - CSW01_14905 0.83 -1.0
203,190 + +0.1
203,200 + -0.8
203,200 + +0.8
203,276 - +0.6
203,295 + +0.5
203,303 - +0.3
203,303 - -0.8
203,550 + CSW01_14910 0.50 -0.5
203,550 + CSW01_14910 0.50 -1.7
203,728 + -1.2
203,802 + -0.1
203,802 + +1.5
203,802 + -0.4
203,823 - +1.5
203,996 + -1.2
203,999 - +0.2
204,047 - CSW01_14915 0.15 +0.0
204,108 + CSW01_14915 0.42 +0.3
204,205 + CSW01_14915 0.85 +0.5
204,255 + +0.0
204,263 - +0.4
204,265 + +0.9
204,360 - +0.3

Or see this region's nucleotide sequence