Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14530

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14525 and CSW01_14530 are separated by 180 nucleotidesCSW01_14530 and CSW01_14535 are separated by 41 nucleotides CSW01_14525: CSW01_14525 - HAD family phosphatase, at 110,029 to 110,688 _14525 CSW01_14530: CSW01_14530 - SulP family inorganic anion transporter, at 110,869 to 112,647 _14530 CSW01_14535: CSW01_14535 - RluA family pseudouridine synthase, at 112,689 to 114,368 _14535 Position (kb) 110 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 109.945 kb on + strandat 109.950 kb on + strandat 109.963 kb on + strandat 109.971 kb on - strandat 109.971 kb on - strandat 109.971 kb on - strandat 109.971 kb on - strandat 110.255 kb on + strand, within CSW01_14525at 110.255 kb on + strand, within CSW01_14525at 110.255 kb on + strand, within CSW01_14525at 110.263 kb on - strand, within CSW01_14525at 110.263 kb on - strand, within CSW01_14525at 110.263 kb on - strand, within CSW01_14525at 110.263 kb on - strand, within CSW01_14525at 110.263 kb on - strand, within CSW01_14525at 110.263 kb on - strand, within CSW01_14525at 110.263 kb on - strand, within CSW01_14525at 110.263 kb on - strand, within CSW01_14525at 110.263 kb on - strand, within CSW01_14525at 110.271 kb on + strand, within CSW01_14525at 110.395 kb on + strand, within CSW01_14525at 110.405 kb on - strand, within CSW01_14525at 110.448 kb on - strand, within CSW01_14525at 110.485 kb on + strand, within CSW01_14525at 110.555 kb on + strand, within CSW01_14525at 110.610 kb on + strand, within CSW01_14525at 110.638 kb on - strandat 110.715 kb on + strandat 110.723 kb on - strandat 110.748 kb on + strandat 110.773 kb on + strandat 110.877 kb on + strandat 110.877 kb on + strandat 110.885 kb on - strandat 110.885 kb on - strandat 110.899 kb on - strandat 110.904 kb on - strandat 110.904 kb on - strandat 110.904 kb on - strandat 110.939 kb on + strandat 110.988 kb on + strandat 110.992 kb on - strandat 111.002 kb on - strandat 111.067 kb on + strand, within CSW01_14530at 111.067 kb on + strand, within CSW01_14530at 111.075 kb on - strand, within CSW01_14530at 111.084 kb on + strand, within CSW01_14530at 111.084 kb on + strand, within CSW01_14530at 111.191 kb on - strand, within CSW01_14530at 111.195 kb on + strand, within CSW01_14530at 111.195 kb on + strand, within CSW01_14530at 111.201 kb on - strand, within CSW01_14530at 111.300 kb on + strand, within CSW01_14530at 111.308 kb on - strand, within CSW01_14530at 111.308 kb on - strand, within CSW01_14530at 111.316 kb on - strand, within CSW01_14530at 111.408 kb on + strand, within CSW01_14530at 111.416 kb on - strand, within CSW01_14530at 111.416 kb on - strand, within CSW01_14530at 111.435 kb on + strand, within CSW01_14530at 111.436 kb on + strand, within CSW01_14530at 111.439 kb on - strand, within CSW01_14530at 111.439 kb on - strand, within CSW01_14530at 111.443 kb on - strand, within CSW01_14530at 111.586 kb on - strand, within CSW01_14530at 111.586 kb on - strand, within CSW01_14530at 111.586 kb on - strand, within CSW01_14530at 111.586 kb on - strand, within CSW01_14530at 111.593 kb on + strand, within CSW01_14530at 111.653 kb on - strand, within CSW01_14530at 111.739 kb on - strand, within CSW01_14530at 111.797 kb on + strand, within CSW01_14530at 111.805 kb on - strand, within CSW01_14530at 111.963 kb on - strand, within CSW01_14530at 111.971 kb on + strand, within CSW01_14530at 112.050 kb on - strand, within CSW01_14530at 112.060 kb on + strand, within CSW01_14530at 112.060 kb on + strand, within CSW01_14530at 112.068 kb on - strand, within CSW01_14530at 112.068 kb on - strand, within CSW01_14530at 112.170 kb on + strand, within CSW01_14530at 112.259 kb on + strand, within CSW01_14530at 112.303 kb on + strand, within CSW01_14530at 112.366 kb on + strand, within CSW01_14530at 112.369 kb on - strand, within CSW01_14530at 112.369 kb on - strand, within CSW01_14530at 112.369 kb on - strand, within CSW01_14530at 112.439 kb on - strand, within CSW01_14530at 112.454 kb on + strand, within CSW01_14530at 112.474 kb on - strandat 112.555 kb on - strandat 112.555 kb on - strandat 112.573 kb on + strandat 112.588 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.722 kb on - strandat 112.722 kb on - strandat 112.722 kb on - strandat 112.722 kb on - strandat 112.729 kb on + strandat 112.729 kb on + strandat 112.729 kb on + strandat 112.729 kb on + strandat 112.729 kb on + strandat 112.729 kb on + strandat 112.737 kb on - strandat 112.737 kb on - strandat 112.737 kb on - strandat 112.876 kb on + strand, within CSW01_14535at 112.894 kb on + strand, within CSW01_14535at 112.939 kb on + strand, within CSW01_14535at 113.140 kb on - strand, within CSW01_14535at 113.213 kb on - strand, within CSW01_14535at 113.257 kb on + strand, within CSW01_14535at 113.265 kb on - strand, within CSW01_14535at 113.303 kb on + strand, within CSW01_14535at 113.304 kb on + strand, within CSW01_14535at 113.304 kb on + strand, within CSW01_14535at 113.312 kb on - strand, within CSW01_14535at 113.312 kb on - strand, within CSW01_14535at 113.312 kb on - strand, within CSW01_14535at 113.404 kb on + strand, within CSW01_14535at 113.412 kb on - strand, within CSW01_14535at 113.412 kb on - strand, within CSW01_14535at 113.452 kb on + strand, within CSW01_14535at 113.452 kb on + strand, within CSW01_14535at 113.452 kb on + strand, within CSW01_14535at 113.462 kb on + strand, within CSW01_14535at 113.529 kb on + strand, within CSW01_14535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
remove
109,945 + +0.3
109,950 + -0.1
109,963 + +0.4
109,971 - +0.2
109,971 - +0.2
109,971 - +0.1
109,971 - +0.4
110,255 + CSW01_14525 0.34 +0.5
110,255 + CSW01_14525 0.34 +0.3
110,255 + CSW01_14525 0.34 -0.2
110,263 - CSW01_14525 0.35 +0.3
110,263 - CSW01_14525 0.35 -0.1
110,263 - CSW01_14525 0.35 -0.5
110,263 - CSW01_14525 0.35 -0.9
110,263 - CSW01_14525 0.35 +0.3
110,263 - CSW01_14525 0.35 -0.4
110,263 - CSW01_14525 0.35 -0.2
110,263 - CSW01_14525 0.35 +0.3
110,263 - CSW01_14525 0.35 +1.1
110,271 + CSW01_14525 0.37 +0.5
110,395 + CSW01_14525 0.55 -0.7
110,405 - CSW01_14525 0.57 -1.4
110,448 - CSW01_14525 0.63 -0.1
110,485 + CSW01_14525 0.69 +0.3
110,555 + CSW01_14525 0.80 +0.2
110,610 + CSW01_14525 0.88 +0.2
110,638 - +0.5
110,715 + +0.3
110,723 - -0.2
110,748 + +2.3
110,773 + +0.6
110,877 + +0.3
110,877 + -0.6
110,885 - +0.4
110,885 - +0.5
110,899 - -0.5
110,904 - +0.7
110,904 - +0.7
110,904 - +0.0
110,939 + +0.3
110,988 + -0.6
110,992 - -0.2
111,002 - +0.0
111,067 + CSW01_14530 0.11 +0.8
111,067 + CSW01_14530 0.11 -0.1
111,075 - CSW01_14530 0.12 -0.0
111,084 + CSW01_14530 0.12 +0.6
111,084 + CSW01_14530 0.12 -0.6
111,191 - CSW01_14530 0.18 +0.8
111,195 + CSW01_14530 0.18 +0.2
111,195 + CSW01_14530 0.18 +0.4
111,201 - CSW01_14530 0.19 +0.5
111,300 + CSW01_14530 0.24 -0.3
111,308 - CSW01_14530 0.25 +0.6
111,308 - CSW01_14530 0.25 +0.4
111,316 - CSW01_14530 0.25 +0.3
111,408 + CSW01_14530 0.30 +0.6
111,416 - CSW01_14530 0.31 +0.7
111,416 - CSW01_14530 0.31 +0.4
111,435 + CSW01_14530 0.32 +0.7
111,436 + CSW01_14530 0.32 +0.9
111,439 - CSW01_14530 0.32 +0.4
111,439 - CSW01_14530 0.32 +1.3
111,443 - CSW01_14530 0.32 -0.3
111,586 - CSW01_14530 0.40 +0.6
111,586 - CSW01_14530 0.40 +0.2
111,586 - CSW01_14530 0.40 +0.3
111,586 - CSW01_14530 0.40 +1.3
111,593 + CSW01_14530 0.41 +0.5
111,653 - CSW01_14530 0.44 +0.6
111,739 - CSW01_14530 0.49 -1.1
111,797 + CSW01_14530 0.52 +0.5
111,805 - CSW01_14530 0.53 +0.3
111,963 - CSW01_14530 0.61 +1.1
111,971 + CSW01_14530 0.62 +0.2
112,050 - CSW01_14530 0.66 +0.7
112,060 + CSW01_14530 0.67 +0.4
112,060 + CSW01_14530 0.67 +1.0
112,068 - CSW01_14530 0.67 +0.8
112,068 - CSW01_14530 0.67 +1.6
112,170 + CSW01_14530 0.73 +0.3
112,259 + CSW01_14530 0.78 +0.4
112,303 + CSW01_14530 0.81 +1.0
112,366 + CSW01_14530 0.84 +0.8
112,369 - CSW01_14530 0.84 +0.6
112,369 - CSW01_14530 0.84 +0.2
112,369 - CSW01_14530 0.84 +0.4
112,439 - CSW01_14530 0.88 +0.5
112,454 + CSW01_14530 0.89 +0.5
112,474 - +0.3
112,555 - -0.1
112,555 - -2.0
112,573 + +0.6
112,588 + +0.4
112,714 + -0.5
112,714 + +0.1
112,714 + +0.3
112,714 + +0.7
112,714 + +0.9
112,714 + +0.4
112,714 + -0.3
112,722 - +0.8
112,722 - -0.1
112,722 - -0.4
112,722 - -0.0
112,729 + -0.1
112,729 + -0.2
112,729 + -0.3
112,729 + -0.1
112,729 + +1.6
112,729 + +0.3
112,737 - +0.2
112,737 - -0.4
112,737 - -0.4
112,876 + CSW01_14535 0.11 +0.6
112,894 + CSW01_14535 0.12 +0.8
112,939 + CSW01_14535 0.15 +1.6
113,140 - CSW01_14535 0.27 +0.0
113,213 - CSW01_14535 0.31 +0.1
113,257 + CSW01_14535 0.34 -0.2
113,265 - CSW01_14535 0.34 +1.2
113,303 + CSW01_14535 0.37 +0.0
113,304 + CSW01_14535 0.37 +0.1
113,304 + CSW01_14535 0.37 -0.7
113,312 - CSW01_14535 0.37 -0.8
113,312 - CSW01_14535 0.37 -0.7
113,312 - CSW01_14535 0.37 +0.9
113,404 + CSW01_14535 0.43 -2.1
113,412 - CSW01_14535 0.43 -0.5
113,412 - CSW01_14535 0.43 +0.1
113,452 + CSW01_14535 0.45 -0.8
113,452 + CSW01_14535 0.45 +0.7
113,452 + CSW01_14535 0.45 +0.2
113,462 + CSW01_14535 0.46 +1.8
113,529 + CSW01_14535 0.50 +0.5

Or see this region's nucleotide sequence