Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14395

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14390 and CSW01_14395 overlap by 4 nucleotidesCSW01_14395 and CSW01_14400 overlap by 62 nucleotidesCSW01_14400 and CSW01_14405 are separated by 163 nucleotides CSW01_14390: CSW01_14390 - GGDEF domain-containing protein, at 82,991 to 84,091 _14390 CSW01_14395: CSW01_14395 - oxidoreductase, at 84,088 to 84,555 _14395 CSW01_14400: CSW01_14400 - hypothetical protein, at 84,494 to 84,682 _14400 CSW01_14405: CSW01_14405 - hypothetical protein, at 84,846 to 86,222 _14405 Position (kb) 84 85Strain fitness (log2 ratio) -1 0 1 2 3at 83.088 kb on + strandat 83.088 kb on + strandat 83.091 kb on - strandat 83.183 kb on + strand, within CSW01_14390at 83.205 kb on - strand, within CSW01_14390at 83.207 kb on + strand, within CSW01_14390at 83.207 kb on + strand, within CSW01_14390at 83.215 kb on - strand, within CSW01_14390at 83.215 kb on - strand, within CSW01_14390at 83.294 kb on - strand, within CSW01_14390at 83.422 kb on - strand, within CSW01_14390at 83.442 kb on + strand, within CSW01_14390at 83.457 kb on - strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.466 kb on + strand, within CSW01_14390at 83.467 kb on - strand, within CSW01_14390at 83.467 kb on - strand, within CSW01_14390at 83.467 kb on - strand, within CSW01_14390at 83.474 kb on + strand, within CSW01_14390at 83.502 kb on - strand, within CSW01_14390at 83.509 kb on + strand, within CSW01_14390at 83.509 kb on + strand, within CSW01_14390at 83.517 kb on - strand, within CSW01_14390at 83.662 kb on + strand, within CSW01_14390at 83.790 kb on + strand, within CSW01_14390at 83.827 kb on + strand, within CSW01_14390at 83.875 kb on + strand, within CSW01_14390at 83.875 kb on + strand, within CSW01_14390at 83.883 kb on - strand, within CSW01_14390at 83.917 kb on + strand, within CSW01_14390at 83.955 kb on + strand, within CSW01_14390at 83.955 kb on + strand, within CSW01_14390at 83.955 kb on + strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 84.029 kb on + strandat 84.178 kb on + strand, within CSW01_14395at 84.178 kb on + strand, within CSW01_14395at 84.178 kb on + strand, within CSW01_14395at 84.320 kb on + strand, within CSW01_14395at 84.363 kb on + strand, within CSW01_14395at 84.363 kb on + strand, within CSW01_14395at 84.395 kb on + strand, within CSW01_14395at 84.432 kb on + strand, within CSW01_14395at 84.440 kb on - strand, within CSW01_14395at 84.515 kb on + strandat 84.515 kb on + strandat 84.538 kb on - strandat 84.572 kb on - strand, within CSW01_14400at 84.580 kb on - strand, within CSW01_14400at 84.580 kb on - strand, within CSW01_14400at 84.582 kb on - strand, within CSW01_14400at 84.582 kb on - strand, within CSW01_14400at 84.844 kb on + strandat 84.852 kb on - strandat 84.951 kb on + strandat 84.956 kb on + strandat 84.956 kb on + strandat 84.956 kb on + strandat 84.991 kb on + strand, within CSW01_14405at 85.188 kb on + strand, within CSW01_14405at 85.212 kb on + strand, within CSW01_14405at 85.216 kb on + strand, within CSW01_14405at 85.220 kb on - strand, within CSW01_14405at 85.228 kb on + strand, within CSW01_14405at 85.254 kb on + strand, within CSW01_14405at 85.285 kb on + strand, within CSW01_14405at 85.417 kb on + strand, within CSW01_14405at 85.454 kb on - strand, within CSW01_14405at 85.480 kb on + strand, within CSW01_14405at 85.481 kb on - strand, within CSW01_14405at 85.517 kb on + strand, within CSW01_14405

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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83,088 + +2.5
83,088 + +2.7
83,091 - -0.3
83,183 + CSW01_14390 0.17 +0.0
83,205 - CSW01_14390 0.19 +0.1
83,207 + CSW01_14390 0.20 +0.8
83,207 + CSW01_14390 0.20 +0.2
83,215 - CSW01_14390 0.20 -0.2
83,215 - CSW01_14390 0.20 -0.6
83,294 - CSW01_14390 0.28 -0.1
83,422 - CSW01_14390 0.39 +1.5
83,442 + CSW01_14390 0.41 +0.2
83,457 - CSW01_14390 0.42 +0.1
83,459 + CSW01_14390 0.43 +0.2
83,459 + CSW01_14390 0.43 +0.3
83,459 + CSW01_14390 0.43 +0.4
83,459 + CSW01_14390 0.43 +0.0
83,466 + CSW01_14390 0.43 +0.1
83,467 - CSW01_14390 0.43 +0.6
83,467 - CSW01_14390 0.43 -1.2
83,467 - CSW01_14390 0.43 +0.5
83,474 + CSW01_14390 0.44 -0.6
83,502 - CSW01_14390 0.46 +0.8
83,509 + CSW01_14390 0.47 -0.5
83,509 + CSW01_14390 0.47 +0.6
83,517 - CSW01_14390 0.48 -0.0
83,662 + CSW01_14390 0.61 +0.3
83,790 + CSW01_14390 0.73 -0.1
83,827 + CSW01_14390 0.76 +0.3
83,875 + CSW01_14390 0.80 -0.3
83,875 + CSW01_14390 0.80 -1.3
83,883 - CSW01_14390 0.81 +0.4
83,917 + CSW01_14390 0.84 +0.5
83,955 + CSW01_14390 0.88 +0.6
83,955 + CSW01_14390 0.88 -0.1
83,955 + CSW01_14390 0.88 +0.5
83,963 - CSW01_14390 0.88 -0.2
83,963 - CSW01_14390 0.88 -0.4
83,963 - CSW01_14390 0.88 +0.9
83,963 - CSW01_14390 0.88 +0.4
83,963 - CSW01_14390 0.88 -1.4
84,029 + +1.0
84,178 + CSW01_14395 0.19 +0.0
84,178 + CSW01_14395 0.19 -0.5
84,178 + CSW01_14395 0.19 +0.2
84,320 + CSW01_14395 0.50 +0.3
84,363 + CSW01_14395 0.59 +0.4
84,363 + CSW01_14395 0.59 +0.3
84,395 + CSW01_14395 0.66 -0.3
84,432 + CSW01_14395 0.74 -0.0
84,440 - CSW01_14395 0.75 -0.3
84,515 + +1.6
84,515 + -0.1
84,538 - -0.2
84,572 - CSW01_14400 0.41 +0.1
84,580 - CSW01_14400 0.46 +1.2
84,580 - CSW01_14400 0.46 +0.7
84,582 - CSW01_14400 0.47 -0.1
84,582 - CSW01_14400 0.47 +0.7
84,844 + +0.8
84,852 - -0.2
84,951 + -0.1
84,956 + -1.4
84,956 + +0.7
84,956 + +0.0
84,991 + CSW01_14405 0.11 +0.6
85,188 + CSW01_14405 0.25 +0.3
85,212 + CSW01_14405 0.27 +3.5
85,216 + CSW01_14405 0.27 +0.6
85,220 - CSW01_14405 0.27 +1.0
85,228 + CSW01_14405 0.28 +0.0
85,254 + CSW01_14405 0.30 +0.1
85,285 + CSW01_14405 0.32 -0.8
85,417 + CSW01_14405 0.41 -1.4
85,454 - CSW01_14405 0.44 +0.6
85,480 + CSW01_14405 0.46 -0.8
85,481 - CSW01_14405 0.46 -0.6
85,517 + CSW01_14405 0.49 -0.0

Or see this region's nucleotide sequence