Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13960

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_aerobic_18HR_ZN19B
2,970,706	+		CSW01_13950	0.83	+0.5
2,970,761	-				-0.2
2,970,790	-				+1.6
2,971,403	+				+0.1
2,971,403	+				-0.7
2,971,410	+				+0.3
2,971,411	-				-0.4
2,971,411	-				-0.3
2,971,432	+				+0.2
2,971,462	-				-0.7
2,971,463	+				-1.1
2,971,487	-				-0.7
2,971,497	-				-0.9
2,971,515	+				-1.1
2,971,538	+				-0.1
2,971,538	+				+0.0
2,971,538	+				+0.1
2,971,538	+				-1.0
2,971,538	+				-0.3
2,971,538	+				-2.7
2,971,546	-				-0.7
2,971,546	-				-0.7
2,971,546	-				-0.5
2,971,546	-				-1.0
2,971,558	+				-0.1
2,971,558	+				-0.6
2,971,577	-		CSW01_13960	0.10	-0.1
2,971,660	+		CSW01_13960	0.16	+0.6
2,971,679	+		CSW01_13960	0.17	-1.3
2,971,687	-		CSW01_13960	0.18	+0.8
2,971,751	-		CSW01_13960	0.22	-0.4
2,971,870	-		CSW01_13960	0.31	+0.1
2,971,873	-		CSW01_13960	0.31	+0.3
2,971,875	+		CSW01_13960	0.31	-0.9
2,971,875	+		CSW01_13960	0.31	-0.6
2,971,875	+		CSW01_13960	0.31	-0.1
2,971,883	-		CSW01_13960	0.31	+0.2
2,971,883	-		CSW01_13960	0.31	-1.4
2,971,883	-		CSW01_13960	0.31	+3.4
2,971,926	+		CSW01_13960	0.34	-0.2
2,971,931	+		CSW01_13960	0.35	+0.0
2,971,949	-		CSW01_13960	0.36	+0.3
2,971,949	-		CSW01_13960	0.36	-0.7
2,971,958	+		CSW01_13960	0.37	-0.5
2,971,958	+		CSW01_13960	0.37	-2.8
2,971,959	-		CSW01_13960	0.37	-0.3
2,971,966	-		CSW01_13960	0.37	-0.5
2,971,966	-		CSW01_13960	0.37	-1.1
2,971,966	-		CSW01_13960	0.37	-0.1
2,971,988	-		CSW01_13960	0.39	-0.5
2,972,032	-		CSW01_13960	0.42	+0.1
2,972,054	+		CSW01_13960	0.43	-0.2
2,972,064	-		CSW01_13960	0.44	-0.6
2,972,076	+		CSW01_13960	0.45	-0.6
2,972,083	+		CSW01_13960	0.45	-1.0
2,972,084	-		CSW01_13960	0.45	+1.6
2,972,091	-		CSW01_13960	0.46	+0.3
2,972,117	-		CSW01_13960	0.48	+0.6
2,972,119	+		CSW01_13960	0.48	-1.9
2,972,133	+		CSW01_13960	0.49	-1.4
2,972,165	-		CSW01_13960	0.51	-0.2
2,972,287	-		CSW01_13960	0.59	+0.1
2,972,290	-		CSW01_13960	0.59	-0.3
2,972,311	-		CSW01_13960	0.61	-0.5
2,972,397	+		CSW01_13960	0.67	-1.3
2,972,405	-		CSW01_13960	0.67	-0.5
2,972,415	-		CSW01_13960	0.68	+0.4
2,972,420	+		CSW01_13960	0.68	-0.3
2,972,454	+		CSW01_13960	0.71	-0.5
2,972,467	+		CSW01_13960	0.72	-0.1
2,972,475	-		CSW01_13960	0.72	-0.9
2,972,505	+		CSW01_13960	0.74	-0.4
2,972,505	+		CSW01_13960	0.74	-0.1
2,972,505	+		CSW01_13960	0.74	-0.5
2,972,505	+		CSW01_13960	0.74	+0.7
2,972,505	+		CSW01_13960	0.74	-0.4
2,972,513	-		CSW01_13960	0.75	-0.4
2,972,513	-		CSW01_13960	0.75	-0.2
2,972,513	-		CSW01_13960	0.75	-0.1
2,972,513	-		CSW01_13960	0.75	-0.6
2,972,513	-		CSW01_13960	0.75	-0.7
2,972,513	-		CSW01_13960	0.75	+0.1
2,972,639	+		CSW01_13960	0.83	-0.9
2,972,649	+		CSW01_13960	0.84	-0.6
2,972,649	+		CSW01_13960	0.84	-0.1
2,972,657	-		CSW01_13960	0.85	-0.6
2,972,657	-		CSW01_13960	0.85	-0.3
2,972,662	-		CSW01_13960	0.85	-1.6
2,972,730	+		CSW01_13960	0.90	+0.5
2,972,733	+		CSW01_13960	0.90	-1.1
2,972,773	+				+0.1
2,972,773	+				-0.8
2,972,781	-				-0.1
2,972,781	-				-0.6
2,972,826	+				-0.1
2,972,890	+				-1.9
2,972,893	-				-0.5
2,972,898	-				-0.3
2,972,907	-				-1.0
2,972,913	+				-0.1
2,972,913	+				-1.4
2,972,915	+				-0.8
2,972,921	-				-0.2
2,972,921	-				+0.3
2,972,921	-				-0.2
2,972,921	-				-1.1
2,972,921	-				+1.6
2,972,923	-				+0.1
2,972,923	-				-0.2
2,972,926	-				-0.8
2,972,994	+		CSW01_13965	0.15	-0.2
2,973,009	+		CSW01_13965	0.17	-1.3
2,973,104	-		CSW01_13965	0.32	-0.1
2,973,104	-		CSW01_13965	0.32	-0.2
2,973,104	-		CSW01_13965	0.32	+0.1
2,973,110	+		CSW01_13965	0.33	-0.3
2,973,118	-		CSW01_13965	0.34	+0.3
2,973,146	-		CSW01_13965	0.39	-0.0
2,973,150	+		CSW01_13965	0.39	+0.1
2,973,207	-		CSW01_13965	0.48	-0.7
2,973,262	+		CSW01_13965	0.57	+0.0
2,973,262	+		CSW01_13965	0.57	-0.5
2,973,262	+		CSW01_13965	0.57	+0.2
2,973,262	+		CSW01_13965	0.57	+0.9
2,973,270	-		CSW01_13965	0.58	-0.6
2,973,295	+		CSW01_13965	0.62	-0.1
2,973,303	-		CSW01_13965	0.64	+0.6
2,973,303	-		CSW01_13965	0.64	+1.4
2,973,303	-		CSW01_13965	0.64	+0.7
2,973,303	-		CSW01_13965	0.64	-0.3
2,973,318	+		CSW01_13965	0.66	+0.0
2,973,372	+		CSW01_13965	0.74	+0.9
2,973,372	+		CSW01_13965	0.74	-0.4
2,973,393	+		CSW01_13965	0.78	+1.9
2,973,398	+		CSW01_13965	0.79	-0.5
2,973,398	+		CSW01_13965	0.79	-0.2
2,973,398	+		CSW01_13965	0.79	+0.1
2,973,398	+		CSW01_13965	0.79	-0.2
2,973,406	-		CSW01_13965	0.80	-0.4
2,973,406	-		CSW01_13965	0.80	-0.5
2,973,406	-		CSW01_13965	0.80	+0.2
2,973,406	-		CSW01_13965	0.80	+0.6
2,973,434	+		CSW01_13965	0.84	-0.3
2,973,434	+		CSW01_13965	0.84	-0.7
2,973,437	-		CSW01_13965	0.85	+0.5
2,973,437	-		CSW01_13965	0.85	-0.6
2,973,442	-		CSW01_13965	0.85	+0.1
2,973,497	-				+0.4
2,973,513	-				+0.8
2,973,535	+				-0.2
2,973,563	+				+0.1
2,973,563	+				-0.0
2,973,563	+				+1.4
2,973,563	+				-0.7
2,973,563	+				-1.0
2,973,563	+				+1.0
2,973,563	+				+0.6
2,973,571	-				-1.6
2,973,571	-				-0.2
2,973,571	-				-0.6
2,973,571	-				+0.4
2,973,587	-				-0.4
2,973,587	-				+0.4
2,973,587	-				-0.0
2,973,704	+				-0.9
2,973,720	+				-0.1
2,973,720	+				+0.5
2,973,742	-				-0.3
2,973,755	+				-0.1
2,973,756	+				+0.2
2,973,764	-				+0.4
2,973,764	-				-1.0
2,973,764	-				-0.2
2,973,769	+				-0.2
2,973,769	+				-0.4
2,973,803	+				-1.9
2,973,837	+				-0.2
2,973,837	+				+0.0
2,973,845	-				-0.4
2,973,847	+				-0.8
2,973,855	-				+0.8
2,973,873	+				+0.1
2,973,875	-				+1.6