Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13325

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_aerobic_18HR_ZN19B
2,834,459	-		CSW01_13315	0.25	+1.6
2,834,461	+		CSW01_13315	0.25	+0.2
2,834,461	+		CSW01_13315	0.25	+0.1
2,834,462	+		CSW01_13315	0.25	-0.2
2,834,462	+		CSW01_13315	0.25	-1.5
2,834,469	-		CSW01_13315	0.27	-0.2
2,834,470	-		CSW01_13315	0.27	+0.2
2,834,531	-		CSW01_13315	0.39	-0.0
2,834,550	+		CSW01_13315	0.42	-0.4
2,834,558	-		CSW01_13315	0.44	+0.3
2,834,565	-		CSW01_13315	0.45	-0.3
2,834,589	+		CSW01_13315	0.50	+0.2
2,834,597	+		CSW01_13315	0.51	-0.9
2,834,597	-		CSW01_13315	0.51	+0.4
2,834,597	-		CSW01_13315	0.51	+0.3
2,834,611	+		CSW01_13315	0.54	+0.5
2,834,611	+		CSW01_13315	0.54	-0.9
2,834,611	+		CSW01_13315	0.54	+0.4
2,834,611	+		CSW01_13315	0.54	+0.1
2,834,611	+		CSW01_13315	0.54	+0.0
2,834,619	-		CSW01_13315	0.55	+0.1
2,834,619	-		CSW01_13315	0.55	+0.1
2,834,619	-		CSW01_13315	0.55	-0.3
2,834,619	-		CSW01_13315	0.55	+0.3
2,834,628	+		CSW01_13315	0.57	+0.3
2,834,655	+		CSW01_13315	0.62	+0.3
2,834,679	-		CSW01_13315	0.67	-0.4
2,834,681	+		CSW01_13315	0.67	+0.1
2,834,713	+		CSW01_13315	0.74	+0.6
2,834,713	+		CSW01_13315	0.74	+0.3
2,834,777	+		CSW01_13315	0.86	+0.3
2,834,777	-		CSW01_13315	0.86	-1.6
2,834,789	+		CSW01_13315	0.88	+0.2
2,834,789	+		CSW01_13315	0.88	-2.1
2,834,797	-		CSW01_13315	0.90	-0.7
2,834,797	-		CSW01_13315	0.90	-0.2
2,834,860	-				+0.5
2,834,875	+				-0.9
2,834,876	+				+0.5
2,834,882	+				-1.0
2,834,883	-				-1.5
2,834,903	+		CSW01_13320	0.11	+0.6
2,834,903	+		CSW01_13320	0.11	+0.1
2,834,917	+		CSW01_13320	0.13	+0.2
2,834,930	-		CSW01_13320	0.15	+0.4
2,834,932	+		CSW01_13320	0.15	+0.7
2,834,932	+		CSW01_13320	0.15	-2.2
2,834,940	-		CSW01_13320	0.17	+0.1
2,835,023	-		CSW01_13320	0.31	+0.2
2,835,063	+		CSW01_13320	0.37	+0.2
2,835,078	+		CSW01_13320	0.40	+0.5
2,835,078	+		CSW01_13320	0.40	-0.1
2,835,078	+		CSW01_13320	0.40	+0.7
2,835,078	+		CSW01_13320	0.40	+0.0
2,835,101	+		CSW01_13320	0.44	+0.6
2,835,109	-		CSW01_13320	0.45	+0.5
2,835,191	-		CSW01_13320	0.59	-0.3
2,835,191	-		CSW01_13320	0.59	+0.1
2,835,201	+		CSW01_13320	0.60	+0.0
2,835,203	+		CSW01_13320	0.61	+0.9
2,835,209	-		CSW01_13320	0.62	-1.6
2,835,211	-		CSW01_13320	0.62	+0.1
2,835,211	-		CSW01_13320	0.62	+0.2
2,835,211	-		CSW01_13320	0.62	+0.6
2,835,211	-		CSW01_13320	0.62	+0.6
2,835,257	-		CSW01_13320	0.70	-0.4
2,835,267	+		CSW01_13320	0.71	+0.2
2,835,283	-		CSW01_13320	0.74	-0.3
2,835,312	+		CSW01_13320	0.79	+0.1
2,835,319	-		CSW01_13320	0.80	+1.5
2,835,319	-		CSW01_13320	0.80	+0.5
2,835,332	+		CSW01_13320	0.82	+1.2
2,835,332	+		CSW01_13320	0.82	+1.1
2,835,332	+		CSW01_13320	0.82	+0.5
2,835,340	-		CSW01_13320	0.83	+1.4
2,835,346	+		CSW01_13320	0.84	+0.1
2,835,405	+				+0.2
2,835,413	-				-0.2
2,835,413	-				-0.2
2,835,413	-				+0.5
2,835,414	+				+0.0
2,835,414	+				+0.2
2,835,414	+				-0.8
2,835,414	+				-0.3
2,835,422	-				-0.2
2,835,451	+				-0.4
2,835,451	+				+0.4
2,835,459	-				+2.2
2,835,484	+		CSW01_13325	0.10	-0.8
2,835,492	-		CSW01_13325	0.12	-0.5
2,835,492	-		CSW01_13325	0.12	-1.0
2,835,492	-		CSW01_13325	0.12	-0.6
2,835,663	-		CSW01_13325	0.41	+0.4
2,835,673	-		CSW01_13325	0.42	+0.6
2,835,735	+		CSW01_13325	0.53	-0.3
2,835,755	+		CSW01_13325	0.56	-0.6
2,835,758	+		CSW01_13325	0.57	+0.7
2,835,765	+		CSW01_13325	0.58	-0.3
2,835,786	+		CSW01_13325	0.62	+0.2
2,835,786	+		CSW01_13325	0.62	+0.9
2,835,794	-		CSW01_13325	0.63	+0.1
2,835,821	+		CSW01_13325	0.68	+0.1
2,835,845	-		CSW01_13325	0.72	+0.1
2,835,868	-		CSW01_13325	0.75	+0.8
2,835,878	+		CSW01_13325	0.77	+0.3
2,835,886	-		CSW01_13325	0.79	+0.7
2,835,957	+				-0.7
2,835,983	-				+2.5
2,836,012	+				-0.0
2,836,020	-				+0.3
2,836,023	+				+0.2
2,836,023	+				-0.3
2,836,030	-				+0.3
2,836,031	-				+0.4
2,836,170	+		CSW01_13330	0.17	+0.1
2,836,178	-		CSW01_13330	0.18	+0.3
2,836,178	-		CSW01_13330	0.18	+0.0
2,836,205	+		CSW01_13330	0.21	+0.1
2,836,213	-		CSW01_13330	0.21	+1.2
2,836,221	+		CSW01_13330	0.22	+0.8
2,836,265	+		CSW01_13330	0.26	-0.3
2,836,298	+		CSW01_13330	0.30	-0.1
2,836,298	+		CSW01_13330	0.30	+0.2
2,836,308	+		CSW01_13330	0.31	-0.3
2,836,308	+		CSW01_13330	0.31	+0.8
2,836,308	+		CSW01_13330	0.31	-0.4
2,836,311	-		CSW01_13330	0.31	+0.2
2,836,316	-		CSW01_13330	0.31	+0.5
2,836,316	-		CSW01_13330	0.31	-0.3
2,836,332	+		CSW01_13330	0.33	+0.8
2,836,340	-		CSW01_13330	0.34	+0.5
2,836,340	-		CSW01_13330	0.34	-0.5
2,836,347	-		CSW01_13330	0.35	+1.1
2,836,354	-		CSW01_13330	0.35	+0.2
2,836,452	+		CSW01_13330	0.45	+1.1
2,836,475	-		CSW01_13330	0.47	+0.3
2,836,477	+		CSW01_13330	0.47	+1.4
2,836,524	+		CSW01_13330	0.52	+1.9
2,836,524	+		CSW01_13330	0.52	-0.2
2,836,524	+		CSW01_13330	0.52	+0.8
2,836,532	-		CSW01_13330	0.53	+0.2
2,836,532	-		CSW01_13330	0.53	-0.3
2,836,577	-		CSW01_13330	0.57	+0.3
2,836,578	-		CSW01_13330	0.57	+0.2
2,836,593	+		CSW01_13330	0.59	+1.1
2,836,601	-		CSW01_13330	0.59	+0.1
2,836,609	-		CSW01_13330	0.60	+0.7
2,836,660	+		CSW01_13330	0.65	+0.6
2,836,670	+		CSW01_13330	0.66	+0.1
2,836,733	+		CSW01_13330	0.72	+0.2
2,836,733	+		CSW01_13330	0.72	+0.3
2,836,741	-		CSW01_13330	0.73	+0.4
2,836,741	-		CSW01_13330	0.73	-1.0
2,836,741	-		CSW01_13330	0.73	+0.3
2,836,925	-				-0.3
2,836,940	-				-0.7
2,836,945	+				+0.8
2,836,953	-				-0.6
2,836,953	-				-1.7
2,836,953	-				-0.3
2,836,955	+				+0.4
2,836,971	+				+1.1