Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09150

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09140 and CSW01_09145 are separated by 8 nucleotidesCSW01_09145 and CSW01_09150 overlap by 9 nucleotidesCSW01_09150 and CSW01_09155 are separated by 371 nucleotides CSW01_09140: CSW01_09140 - PTS fructose transporter subunit IIB, at 1,963,872 to 1,964,171 _09140 CSW01_09145: CSW01_09145 - PTS fructose transporter subunit IIA, at 1,964,180 to 1,964,959 _09145 CSW01_09150: CSW01_09150 - AraC family transcriptional regulator, at 1,964,951 to 1,965,790 _09150 CSW01_09155: CSW01_09155 - PTS fructose transporter subunit IIC, at 1,966,162 to 1,968,063 _09155 Position (kb) 1964 1965 1966Strain fitness (log2 ratio) -1 0 1 2at 1963.965 kb on + strand, within CSW01_09140at 1963.965 kb on + strand, within CSW01_09140at 1964.019 kb on + strand, within CSW01_09140at 1964.019 kb on + strand, within CSW01_09140at 1964.021 kb on - strand, within CSW01_09140at 1964.027 kb on - strand, within CSW01_09140at 1964.027 kb on - strand, within CSW01_09140at 1964.054 kb on - strand, within CSW01_09140at 1964.104 kb on - strand, within CSW01_09140at 1964.111 kb on + strand, within CSW01_09140at 1964.132 kb on + strand, within CSW01_09140at 1964.164 kb on + strandat 1964.170 kb on - strandat 1964.224 kb on - strandat 1964.277 kb on - strand, within CSW01_09145at 1964.313 kb on + strand, within CSW01_09145at 1964.321 kb on - strand, within CSW01_09145at 1964.323 kb on + strand, within CSW01_09145at 1964.347 kb on - strand, within CSW01_09145at 1964.440 kb on + strand, within CSW01_09145at 1964.440 kb on + strand, within CSW01_09145at 1964.440 kb on + strand, within CSW01_09145at 1964.450 kb on + strand, within CSW01_09145at 1964.478 kb on + strand, within CSW01_09145at 1964.587 kb on - strand, within CSW01_09145at 1964.594 kb on - strand, within CSW01_09145at 1964.607 kb on - strand, within CSW01_09145at 1964.755 kb on + strand, within CSW01_09145at 1964.755 kb on + strand, within CSW01_09145at 1964.773 kb on - strand, within CSW01_09145at 1964.886 kb on + strandat 1964.924 kb on + strandat 1964.924 kb on + strandat 1964.924 kb on + strandat 1964.932 kb on - strandat 1964.932 kb on - strandat 1964.932 kb on - strandat 1964.977 kb on + strandat 1965.107 kb on - strand, within CSW01_09150at 1965.129 kb on + strand, within CSW01_09150at 1965.273 kb on - strand, within CSW01_09150at 1965.305 kb on + strand, within CSW01_09150at 1965.373 kb on + strand, within CSW01_09150at 1965.373 kb on + strand, within CSW01_09150at 1965.373 kb on + strand, within CSW01_09150at 1965.373 kb on + strand, within CSW01_09150at 1965.381 kb on - strand, within CSW01_09150at 1965.395 kb on + strand, within CSW01_09150at 1965.398 kb on - strand, within CSW01_09150at 1965.422 kb on + strand, within CSW01_09150at 1965.422 kb on + strand, within CSW01_09150at 1965.455 kb on - strand, within CSW01_09150at 1965.515 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.523 kb on + strand, within CSW01_09150at 1965.523 kb on + strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.531 kb on - strand, within CSW01_09150at 1965.538 kb on - strand, within CSW01_09150at 1965.555 kb on + strand, within CSW01_09150at 1965.563 kb on - strand, within CSW01_09150at 1965.593 kb on - strand, within CSW01_09150at 1965.620 kb on + strand, within CSW01_09150at 1965.646 kb on + strand, within CSW01_09150at 1965.651 kb on + strand, within CSW01_09150at 1965.664 kb on + strand, within CSW01_09150at 1965.761 kb on - strandat 1965.761 kb on - strandat 1965.805 kb on - strandat 1965.832 kb on + strandat 1965.832 kb on + strandat 1965.832 kb on + strandat 1965.832 kb on + strandat 1965.835 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.855 kb on - strandat 1965.857 kb on + strandat 1965.857 kb on + strandat 1965.857 kb on + strandat 1965.862 kb on + strandat 1965.867 kb on + strandat 1965.867 kb on + strandat 1965.867 kb on + strandat 1965.875 kb on - strandat 1965.875 kb on - strandat 1965.875 kb on - strandat 1965.875 kb on - strandat 1965.875 kb on - strandat 1965.875 kb on - strandat 1965.879 kb on + strandat 1965.887 kb on - strandat 1965.892 kb on - strandat 1966.055 kb on - strandat 1966.076 kb on - strandat 1966.148 kb on + strandat 1966.148 kb on + strandat 1966.153 kb on - strandat 1966.155 kb on + strandat 1966.184 kb on - strandat 1966.189 kb on - strandat 1966.315 kb on + strandat 1966.359 kb on + strand, within CSW01_09155at 1966.359 kb on + strand, within CSW01_09155at 1966.367 kb on - strand, within CSW01_09155at 1966.367 kb on - strand, within CSW01_09155at 1966.372 kb on + strand, within CSW01_09155at 1966.380 kb on - strand, within CSW01_09155at 1966.380 kb on - strand, within CSW01_09155at 1966.385 kb on - strand, within CSW01_09155at 1966.414 kb on + strand, within CSW01_09155at 1966.414 kb on - strand, within CSW01_09155at 1966.415 kb on - strand, within CSW01_09155at 1966.520 kb on + strand, within CSW01_09155at 1966.528 kb on - strand, within CSW01_09155at 1966.528 kb on - strand, within CSW01_09155at 1966.528 kb on - strand, within CSW01_09155at 1966.549 kb on - strand, within CSW01_09155at 1966.653 kb on - strand, within CSW01_09155at 1966.689 kb on + strand, within CSW01_09155at 1966.689 kb on + strand, within CSW01_09155at 1966.689 kb on + strand, within CSW01_09155at 1966.697 kb on - strand, within CSW01_09155at 1966.697 kb on - strand, within CSW01_09155at 1966.729 kb on + strand, within CSW01_09155

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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1,963,965 + CSW01_09140 0.31 +0.1
1,963,965 + CSW01_09140 0.31 -1.3
1,964,019 + CSW01_09140 0.49 -0.1
1,964,019 + CSW01_09140 0.49 -0.7
1,964,021 - CSW01_09140 0.50 +0.6
1,964,027 - CSW01_09140 0.52 -0.1
1,964,027 - CSW01_09140 0.52 +0.9
1,964,054 - CSW01_09140 0.61 +0.4
1,964,104 - CSW01_09140 0.77 +0.4
1,964,111 + CSW01_09140 0.80 +0.4
1,964,132 + CSW01_09140 0.87 +0.1
1,964,164 + +0.6
1,964,170 - +0.2
1,964,224 - +0.0
1,964,277 - CSW01_09145 0.12 -0.4
1,964,313 + CSW01_09145 0.17 +0.2
1,964,321 - CSW01_09145 0.18 +0.3
1,964,323 + CSW01_09145 0.18 +0.6
1,964,347 - CSW01_09145 0.21 -0.8
1,964,440 + CSW01_09145 0.33 -0.6
1,964,440 + CSW01_09145 0.33 -0.4
1,964,440 + CSW01_09145 0.33 +0.9
1,964,450 + CSW01_09145 0.35 +1.9
1,964,478 + CSW01_09145 0.38 -0.2
1,964,587 - CSW01_09145 0.52 +0.6
1,964,594 - CSW01_09145 0.53 +1.5
1,964,607 - CSW01_09145 0.55 +0.4
1,964,755 + CSW01_09145 0.74 +1.0
1,964,755 + CSW01_09145 0.74 +0.2
1,964,773 - CSW01_09145 0.76 +1.4
1,964,886 + +1.9
1,964,924 + -0.7
1,964,924 + -1.2
1,964,924 + +0.2
1,964,932 - -0.2
1,964,932 - +0.2
1,964,932 - +0.8
1,964,977 + +0.6
1,965,107 - CSW01_09150 0.19 +0.1
1,965,129 + CSW01_09150 0.21 +0.8
1,965,273 - CSW01_09150 0.38 +0.2
1,965,305 + CSW01_09150 0.42 +0.3
1,965,373 + CSW01_09150 0.50 +0.1
1,965,373 + CSW01_09150 0.50 +0.7
1,965,373 + CSW01_09150 0.50 +0.7
1,965,373 + CSW01_09150 0.50 +0.3
1,965,381 - CSW01_09150 0.51 +0.6
1,965,395 + CSW01_09150 0.53 +0.1
1,965,398 - CSW01_09150 0.53 -0.1
1,965,422 + CSW01_09150 0.56 -0.5
1,965,422 + CSW01_09150 0.56 -0.6
1,965,455 - CSW01_09150 0.60 -0.4
1,965,515 + CSW01_09150 0.67 +0.2
1,965,518 + CSW01_09150 0.68 +0.4
1,965,518 + CSW01_09150 0.68 +0.4
1,965,518 + CSW01_09150 0.68 +0.1
1,965,518 + CSW01_09150 0.68 -0.2
1,965,518 + CSW01_09150 0.68 +0.8
1,965,518 + CSW01_09150 0.68 +0.6
1,965,518 + CSW01_09150 0.68 +0.3
1,965,518 + CSW01_09150 0.68 +1.9
1,965,518 + CSW01_09150 0.68 +0.2
1,965,518 + CSW01_09150 0.68 +1.1
1,965,518 + CSW01_09150 0.68 +0.6
1,965,518 + CSW01_09150 0.68 +0.3
1,965,518 + CSW01_09150 0.68 +0.3
1,965,518 + CSW01_09150 0.68 -0.1
1,965,523 + CSW01_09150 0.68 +0.9
1,965,523 + CSW01_09150 0.68 +0.4
1,965,526 - CSW01_09150 0.68 +1.0
1,965,526 - CSW01_09150 0.68 +0.5
1,965,526 - CSW01_09150 0.68 +0.2
1,965,526 - CSW01_09150 0.68 +0.0
1,965,526 - CSW01_09150 0.68 +0.7
1,965,526 - CSW01_09150 0.68 -0.9
1,965,526 - CSW01_09150 0.68 -0.3
1,965,526 - CSW01_09150 0.68 +1.2
1,965,526 - CSW01_09150 0.68 +0.9
1,965,526 - CSW01_09150 0.68 +0.0
1,965,526 - CSW01_09150 0.68 +0.8
1,965,531 - CSW01_09150 0.69 -0.1
1,965,538 - CSW01_09150 0.70 +0.2
1,965,555 + CSW01_09150 0.72 +2.0
1,965,563 - CSW01_09150 0.73 +0.1
1,965,593 - CSW01_09150 0.76 +0.5
1,965,620 + CSW01_09150 0.80 +0.1
1,965,646 + CSW01_09150 0.83 +1.5
1,965,651 + CSW01_09150 0.83 +0.4
1,965,664 + CSW01_09150 0.85 -0.6
1,965,761 - -1.1
1,965,761 - +1.2
1,965,805 - +0.1
1,965,832 + +0.5
1,965,832 + +0.8
1,965,832 + +0.0
1,965,832 + +0.2
1,965,835 - -0.6
1,965,840 - +0.5
1,965,840 - -0.5
1,965,840 - -0.6
1,965,840 - +0.1
1,965,840 - +0.5
1,965,840 - -0.2
1,965,840 - +1.0
1,965,840 - -0.2
1,965,855 - -0.6
1,965,857 + +0.2
1,965,857 + -0.0
1,965,857 + +0.9
1,965,862 + +0.8
1,965,867 + +1.1
1,965,867 + -0.2
1,965,867 + +0.3
1,965,875 - +0.7
1,965,875 - -0.1
1,965,875 - -0.8
1,965,875 - +1.4
1,965,875 - -0.4
1,965,875 - +1.5
1,965,879 + -0.4
1,965,887 - -0.1
1,965,892 - +0.3
1,966,055 - +0.7
1,966,076 - +0.2
1,966,148 + +0.7
1,966,148 + +0.1
1,966,153 - +0.3
1,966,155 + -0.2
1,966,184 - +0.1
1,966,189 - +1.4
1,966,315 + -0.0
1,966,359 + CSW01_09155 0.10 +0.5
1,966,359 + CSW01_09155 0.10 +1.4
1,966,367 - CSW01_09155 0.11 +0.9
1,966,367 - CSW01_09155 0.11 +0.7
1,966,372 + CSW01_09155 0.11 +0.4
1,966,380 - CSW01_09155 0.11 +0.5
1,966,380 - CSW01_09155 0.11 +0.3
1,966,385 - CSW01_09155 0.12 -0.1
1,966,414 + CSW01_09155 0.13 +0.6
1,966,414 - CSW01_09155 0.13 -0.5
1,966,415 - CSW01_09155 0.13 -0.3
1,966,520 + CSW01_09155 0.19 +0.9
1,966,528 - CSW01_09155 0.19 -0.2
1,966,528 - CSW01_09155 0.19 -0.1
1,966,528 - CSW01_09155 0.19 +0.8
1,966,549 - CSW01_09155 0.20 +0.8
1,966,653 - CSW01_09155 0.26 +0.4
1,966,689 + CSW01_09155 0.28 +0.2
1,966,689 + CSW01_09155 0.28 +0.4
1,966,689 + CSW01_09155 0.28 -0.1
1,966,697 - CSW01_09155 0.28 -0.1
1,966,697 - CSW01_09155 0.28 +0.3
1,966,729 + CSW01_09155 0.30 +0.6

Or see this region's nucleotide sequence