Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07520

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07515 and CSW01_07520 are separated by 17 nucleotidesCSW01_07520 and CSW01_07525 are separated by 100 nucleotidesCSW01_07525 and CSW01_07530 overlap by 56 nucleotides CSW01_07515: CSW01_07515 - tail-specific protease, at 1,605,263 to 1,607,260 _07515 CSW01_07520: CSW01_07520 - RNA chaperone ProQ, at 1,607,278 to 1,607,904 _07520 CSW01_07525: CSW01_07525 - Free methionine-(R)-sulfoxide reductase, at 1,608,005 to 1,608,583 _07525 CSW01_07530: CSW01_07530 - ABC transporter ATP-binding protein, at 1,608,528 to 1,610,360 _07530 Position (kb) 1607 1608Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1606.340 kb on - strand, within CSW01_07515at 1606.387 kb on - strand, within CSW01_07515at 1606.422 kb on + strand, within CSW01_07515at 1606.427 kb on + strand, within CSW01_07515at 1606.452 kb on - strand, within CSW01_07515at 1606.462 kb on + strand, within CSW01_07515at 1606.717 kb on - strand, within CSW01_07515at 1606.738 kb on - strand, within CSW01_07515at 1606.985 kb on + strand, within CSW01_07515at 1606.985 kb on + strand, within CSW01_07515at 1606.993 kb on - strand, within CSW01_07515at 1607.029 kb on + strand, within CSW01_07515at 1607.029 kb on + strand, within CSW01_07515at 1607.037 kb on - strand, within CSW01_07515at 1607.381 kb on + strand, within CSW01_07520at 1607.582 kb on + strand, within CSW01_07520at 1607.590 kb on - strand, within CSW01_07520at 1607.679 kb on + strand, within CSW01_07520at 1607.679 kb on + strand, within CSW01_07520at 1607.679 kb on + strand, within CSW01_07520at 1607.687 kb on - strand, within CSW01_07520at 1607.687 kb on - strand, within CSW01_07520at 1607.687 kb on - strand, within CSW01_07520at 1607.687 kb on - strand, within CSW01_07520at 1607.973 kb on - strandat 1608.012 kb on + strandat 1608.024 kb on + strandat 1608.034 kb on + strandat 1608.059 kb on + strandat 1608.059 kb on + strandat 1608.059 kb on + strandat 1608.067 kb on - strand, within CSW01_07525at 1608.067 kb on - strand, within CSW01_07525at 1608.105 kb on + strand, within CSW01_07525at 1608.105 kb on - strand, within CSW01_07525at 1608.121 kb on - strand, within CSW01_07525at 1608.121 kb on - strand, within CSW01_07525at 1608.266 kb on + strand, within CSW01_07525at 1608.353 kb on + strand, within CSW01_07525at 1608.380 kb on - strand, within CSW01_07525at 1608.464 kb on - strand, within CSW01_07525at 1608.466 kb on + strand, within CSW01_07525at 1608.466 kb on + strand, within CSW01_07525at 1608.474 kb on - strand, within CSW01_07525at 1608.474 kb on - strand, within CSW01_07525at 1608.671 kb on + strandat 1608.679 kb on - strandat 1608.720 kb on - strand, within CSW01_07530at 1608.725 kb on - strand, within CSW01_07530at 1608.782 kb on - strand, within CSW01_07530at 1608.799 kb on - strand, within CSW01_07530at 1608.799 kb on - strand, within CSW01_07530at 1608.898 kb on + strand, within CSW01_07530at 1608.898 kb on - strand, within CSW01_07530

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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1,606,340 - CSW01_07515 0.54 -0.0
1,606,387 - CSW01_07515 0.56 +0.6
1,606,422 + CSW01_07515 0.58 +0.2
1,606,427 + CSW01_07515 0.58 +0.2
1,606,452 - CSW01_07515 0.60 -1.0
1,606,462 + CSW01_07515 0.60 -2.1
1,606,717 - CSW01_07515 0.73 +2.2
1,606,738 - CSW01_07515 0.74 -0.6
1,606,985 + CSW01_07515 0.86 -0.6
1,606,985 + CSW01_07515 0.86 +0.1
1,606,993 - CSW01_07515 0.87 -1.0
1,607,029 + CSW01_07515 0.88 +0.3
1,607,029 + CSW01_07515 0.88 -0.4
1,607,037 - CSW01_07515 0.89 -0.8
1,607,381 + CSW01_07520 0.16 +0.9
1,607,582 + CSW01_07520 0.48 +0.2
1,607,590 - CSW01_07520 0.50 +0.3
1,607,679 + CSW01_07520 0.64 -0.6
1,607,679 + CSW01_07520 0.64 -1.1
1,607,679 + CSW01_07520 0.64 -0.3
1,607,687 - CSW01_07520 0.65 -0.1
1,607,687 - CSW01_07520 0.65 +2.6
1,607,687 - CSW01_07520 0.65 +1.0
1,607,687 - CSW01_07520 0.65 +0.4
1,607,973 - -0.3
1,608,012 + +0.6
1,608,024 + +0.2
1,608,034 + -3.9
1,608,059 + +0.4
1,608,059 + +0.8
1,608,059 + +0.8
1,608,067 - CSW01_07525 0.11 +0.8
1,608,067 - CSW01_07525 0.11 -0.4
1,608,105 + CSW01_07525 0.17 +0.4
1,608,105 - CSW01_07525 0.17 +0.1
1,608,121 - CSW01_07525 0.20 -0.2
1,608,121 - CSW01_07525 0.20 +0.1
1,608,266 + CSW01_07525 0.45 +0.2
1,608,353 + CSW01_07525 0.60 -0.0
1,608,380 - CSW01_07525 0.65 +0.7
1,608,464 - CSW01_07525 0.79 +0.3
1,608,466 + CSW01_07525 0.80 +0.5
1,608,466 + CSW01_07525 0.80 -0.4
1,608,474 - CSW01_07525 0.81 +0.2
1,608,474 - CSW01_07525 0.81 +0.4
1,608,671 + -0.1
1,608,679 - +1.0
1,608,720 - CSW01_07530 0.10 +0.4
1,608,725 - CSW01_07530 0.11 +0.0
1,608,782 - CSW01_07530 0.14 -0.4
1,608,799 - CSW01_07530 0.15 +1.0
1,608,799 - CSW01_07530 0.15 +0.9
1,608,898 + CSW01_07530 0.20 +1.0
1,608,898 - CSW01_07530 0.20 -2.0

Or see this region's nucleotide sequence