Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07205

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_07190 and CSW01_07195 are separated by 89 nucleotidesCSW01_07195 and CSW01_07200 overlap by 4 nucleotidesCSW01_07200 and CSW01_07205 are separated by 3 nucleotidesCSW01_07205 and CSW01_07210 are separated by 4 nucleotidesCSW01_07210 and CSW01_07215 are separated by 78 nucleotides CSW01_07190: CSW01_07190 - transcriptional regulator FNR, at 1,530,468 to 1,531,220 _07190 CSW01_07195: CSW01_07195 - cytochrome biogenesis protein, at 1,531,310 to 1,531,984 _07195 CSW01_07200: CSW01_07200 - cbb3-type cytochrome oxidase assembly protein CcoS, at 1,531,981 to 1,532,145 _07200 CSW01_07205: CSW01_07205 - copper-translocating P-type ATPase, at 1,532,149 to 1,534,521 _07205 CSW01_07210: CSW01_07210 - hypothetical protein, at 1,534,526 to 1,535,002 _07210 CSW01_07215: CSW01_07215 - cytochrome-c oxidase, cbb3-type subunit III, at 1,535,081 to 1,536,061 _07215 Position (kb) 1532 1533 1534 1535Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1531.271 kb on - strandat 1531.300 kb on + strandat 1531.348 kb on - strandat 1531.445 kb on + strand, within CSW01_07195at 1531.542 kb on - strand, within CSW01_07195at 1531.591 kb on - strand, within CSW01_07195at 1531.885 kb on + strand, within CSW01_07195at 1531.885 kb on + strand, within CSW01_07195at 1531.893 kb on - strand, within CSW01_07195at 1531.893 kb on - strand, within CSW01_07195at 1532.013 kb on - strand, within CSW01_07200at 1532.026 kb on + strand, within CSW01_07200at 1532.180 kb on - strandat 1532.213 kb on + strandat 1532.231 kb on - strandat 1532.284 kb on - strandat 1532.692 kb on - strand, within CSW01_07205at 1532.746 kb on + strand, within CSW01_07205at 1532.916 kb on - strand, within CSW01_07205at 1532.980 kb on - strand, within CSW01_07205at 1533.080 kb on + strand, within CSW01_07205at 1533.088 kb on - strand, within CSW01_07205at 1533.106 kb on + strand, within CSW01_07205at 1533.106 kb on + strand, within CSW01_07205at 1533.106 kb on + strand, within CSW01_07205at 1533.106 kb on + strand, within CSW01_07205at 1533.114 kb on - strand, within CSW01_07205at 1533.114 kb on - strand, within CSW01_07205at 1533.254 kb on - strand, within CSW01_07205at 1533.394 kb on - strand, within CSW01_07205at 1533.508 kb on + strand, within CSW01_07205at 1533.533 kb on - strand, within CSW01_07205at 1533.582 kb on - strand, within CSW01_07205at 1533.804 kb on + strand, within CSW01_07205at 1533.812 kb on - strand, within CSW01_07205at 1533.850 kb on + strand, within CSW01_07205at 1533.858 kb on - strand, within CSW01_07205at 1534.167 kb on - strand, within CSW01_07205at 1534.181 kb on + strand, within CSW01_07205at 1534.181 kb on + strand, within CSW01_07205at 1534.553 kb on + strandat 1534.576 kb on - strand, within CSW01_07210at 1534.576 kb on - strand, within CSW01_07210at 1534.612 kb on + strand, within CSW01_07210at 1534.620 kb on - strand, within CSW01_07210at 1534.620 kb on - strand, within CSW01_07210at 1534.713 kb on + strand, within CSW01_07210at 1534.739 kb on - strand, within CSW01_07210at 1534.782 kb on + strand, within CSW01_07210at 1534.873 kb on + strand, within CSW01_07210at 1535.268 kb on + strand, within CSW01_07215at 1535.365 kb on + strand, within CSW01_07215at 1535.373 kb on - strand, within CSW01_07215at 1535.390 kb on + strand, within CSW01_07215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
remove
1,531,271 - +0.7
1,531,300 + +0.5
1,531,348 - +0.9
1,531,445 + CSW01_07195 0.20 -1.1
1,531,542 - CSW01_07195 0.34 +0.3
1,531,591 - CSW01_07195 0.42 +1.4
1,531,885 + CSW01_07195 0.85 +0.1
1,531,885 + CSW01_07195 0.85 -0.7
1,531,893 - CSW01_07195 0.86 -1.6
1,531,893 - CSW01_07195 0.86 -1.3
1,532,013 - CSW01_07200 0.19 -1.0
1,532,026 + CSW01_07200 0.27 -0.8
1,532,180 - +0.5
1,532,213 + -1.4
1,532,231 - -0.4
1,532,284 - +1.1
1,532,692 - CSW01_07205 0.23 -0.5
1,532,746 + CSW01_07205 0.25 -2.7
1,532,916 - CSW01_07205 0.32 -2.0
1,532,980 - CSW01_07205 0.35 -0.4
1,533,080 + CSW01_07205 0.39 +0.6
1,533,088 - CSW01_07205 0.40 -0.6
1,533,106 + CSW01_07205 0.40 -0.7
1,533,106 + CSW01_07205 0.40 -0.4
1,533,106 + CSW01_07205 0.40 +1.5
1,533,106 + CSW01_07205 0.40 -0.8
1,533,114 - CSW01_07205 0.41 -1.0
1,533,114 - CSW01_07205 0.41 -0.6
1,533,254 - CSW01_07205 0.47 -0.4
1,533,394 - CSW01_07205 0.52 -1.2
1,533,508 + CSW01_07205 0.57 -0.4
1,533,533 - CSW01_07205 0.58 -0.1
1,533,582 - CSW01_07205 0.60 +0.6
1,533,804 + CSW01_07205 0.70 -0.4
1,533,812 - CSW01_07205 0.70 +0.3
1,533,850 + CSW01_07205 0.72 -0.3
1,533,858 - CSW01_07205 0.72 +0.2
1,534,167 - CSW01_07205 0.85 +0.2
1,534,181 + CSW01_07205 0.86 -1.1
1,534,181 + CSW01_07205 0.86 -0.4
1,534,553 + -0.2
1,534,576 - CSW01_07210 0.10 -1.2
1,534,576 - CSW01_07210 0.10 -0.7
1,534,612 + CSW01_07210 0.18 -2.7
1,534,620 - CSW01_07210 0.20 +2.4
1,534,620 - CSW01_07210 0.20 -1.8
1,534,713 + CSW01_07210 0.39 -1.1
1,534,739 - CSW01_07210 0.45 -3.0
1,534,782 + CSW01_07210 0.54 -0.4
1,534,873 + CSW01_07210 0.73 -0.8
1,535,268 + CSW01_07215 0.19 +0.0
1,535,365 + CSW01_07215 0.29 +0.2
1,535,373 - CSW01_07215 0.30 +0.8
1,535,390 + CSW01_07215 0.31 -1.2

Or see this region's nucleotide sequence