Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05975

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05970 and CSW01_05975 are separated by 167 nucleotidesCSW01_05975 and CSW01_05980 overlap by 8 nucleotides CSW01_05970: CSW01_05970 - 23S rRNA pseudouridylate synthase B, at 1,249,604 to 1,250,569 _05970 CSW01_05975: CSW01_05975 - cysteine/glutathione ABC transporter ATP-binding protein/permease CydC, at 1,250,737 to 1,252,458 _05975 CSW01_05980: CSW01_05980 - thiol reductant ABC exporter subunit CydD, at 1,252,451 to 1,254,238 _05980 Position (kb) 1250 1251 1252 1253Strain fitness (log2 ratio) -2 -1 0 1 2at 1249.842 kb on - strand, within CSW01_05970at 1249.975 kb on + strand, within CSW01_05970at 1250.171 kb on + strand, within CSW01_05970at 1250.193 kb on + strand, within CSW01_05970at 1250.643 kb on + strandat 1250.689 kb on + strandat 1250.689 kb on + strandat 1250.697 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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1,249,842 - CSW01_05970 0.25 -0.9
1,249,975 + CSW01_05970 0.38 -0.9
1,250,171 + CSW01_05970 0.59 -0.3
1,250,193 + CSW01_05970 0.61 -1.9
1,250,643 + +0.5
1,250,689 + +0.0
1,250,689 + +2.0
1,250,697 - +0.5

Or see this region's nucleotide sequence