Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05760

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05755 and CSW01_05760 are separated by 51 nucleotidesCSW01_05760 and CSW01_05765 overlap by 1 nucleotidesCSW01_05765 and CSW01_05770 are separated by 42 nucleotides CSW01_05755: CSW01_05755 - histidinol-phosphate transaminase, at 1,202,220 to 1,203,260 _05755 CSW01_05760: CSW01_05760 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase, at 1,203,312 to 1,204,385 _05760 CSW01_05765: CSW01_05765 - imidazole glycerol phosphate synthase subunit HisH, at 1,204,385 to 1,204,996 _05765 CSW01_05770: CSW01_05770 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 1,205,039 to 1,205,776 _05770 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -2 -1 0 1 2at 1202.365 kb on - strand, within CSW01_05755at 1202.365 kb on - strand, within CSW01_05755at 1202.365 kb on - strand, within CSW01_05755at 1202.389 kb on - strand, within CSW01_05755at 1202.393 kb on + strand, within CSW01_05755at 1202.393 kb on + strand, within CSW01_05755at 1202.472 kb on + strand, within CSW01_05755at 1202.472 kb on - strand, within CSW01_05755at 1202.514 kb on - strand, within CSW01_05755at 1202.516 kb on + strand, within CSW01_05755at 1202.631 kb on + strand, within CSW01_05755at 1202.727 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.848 kb on - strand, within CSW01_05755at 1202.848 kb on - strand, within CSW01_05755at 1202.848 kb on - strand, within CSW01_05755at 1202.862 kb on + strand, within CSW01_05755at 1202.870 kb on - strand, within CSW01_05755at 1202.870 kb on - strand, within CSW01_05755at 1202.893 kb on - strand, within CSW01_05755at 1202.898 kb on - strand, within CSW01_05755at 1202.972 kb on - strand, within CSW01_05755at 1202.980 kb on - strand, within CSW01_05755at 1202.996 kb on + strand, within CSW01_05755at 1203.017 kb on - strand, within CSW01_05755at 1203.055 kb on + strand, within CSW01_05755at 1203.121 kb on + strand, within CSW01_05755at 1203.129 kb on - strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.150 kb on - strand, within CSW01_05755at 1203.263 kb on - strandat 1203.411 kb on - strandat 1203.425 kb on + strand, within CSW01_05760at 1203.427 kb on + strand, within CSW01_05760at 1203.427 kb on + strand, within CSW01_05760at 1203.427 kb on + strand, within CSW01_05760at 1203.432 kb on + strand, within CSW01_05760at 1203.489 kb on + strand, within CSW01_05760at 1203.489 kb on + strand, within CSW01_05760at 1203.497 kb on - strand, within CSW01_05760at 1203.497 kb on - strand, within CSW01_05760at 1203.499 kb on + strand, within CSW01_05760at 1203.541 kb on - strand, within CSW01_05760at 1203.619 kb on - strand, within CSW01_05760at 1203.656 kb on - strand, within CSW01_05760at 1203.688 kb on + strand, within CSW01_05760at 1203.708 kb on + strand, within CSW01_05760at 1203.729 kb on + strand, within CSW01_05760at 1203.753 kb on + strand, within CSW01_05760at 1203.761 kb on - strand, within CSW01_05760at 1203.761 kb on - strand, within CSW01_05760at 1203.761 kb on - strand, within CSW01_05760at 1203.761 kb on - strand, within CSW01_05760at 1203.780 kb on - strand, within CSW01_05760at 1203.817 kb on + strand, within CSW01_05760at 1203.831 kb on - strand, within CSW01_05760at 1203.855 kb on + strand, within CSW01_05760at 1203.866 kb on + strand, within CSW01_05760at 1204.019 kb on - strand, within CSW01_05760at 1204.044 kb on - strand, within CSW01_05760at 1204.044 kb on - strand, within CSW01_05760at 1204.080 kb on - strand, within CSW01_05760at 1204.109 kb on + strand, within CSW01_05760at 1204.111 kb on + strand, within CSW01_05760at 1204.119 kb on - strand, within CSW01_05760at 1204.177 kb on + strand, within CSW01_05760at 1204.203 kb on + strand, within CSW01_05760at 1204.209 kb on + strand, within CSW01_05760at 1204.217 kb on - strand, within CSW01_05760at 1204.260 kb on - strand, within CSW01_05760at 1204.292 kb on - strandat 1204.328 kb on + strandat 1204.328 kb on + strandat 1204.344 kb on + strandat 1204.344 kb on + strandat 1204.369 kb on + strandat 1204.369 kb on + strandat 1204.377 kb on - strandat 1204.377 kb on - strandat 1204.377 kb on - strandat 1204.687 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.695 kb on - strand, within CSW01_05765at 1204.696 kb on - strand, within CSW01_05765at 1204.696 kb on - strand, within CSW01_05765at 1204.697 kb on - strand, within CSW01_05765at 1204.697 kb on - strand, within CSW01_05765at 1204.697 kb on - strand, within CSW01_05765at 1204.702 kb on - strand, within CSW01_05765at 1204.702 kb on - strand, within CSW01_05765at 1204.754 kb on + strand, within CSW01_05765at 1204.774 kb on - strand, within CSW01_05765at 1204.792 kb on + strand, within CSW01_05765at 1204.798 kb on - strand, within CSW01_05765at 1204.800 kb on + strand, within CSW01_05765at 1204.800 kb on - strand, within CSW01_05765at 1204.808 kb on - strand, within CSW01_05765at 1204.808 kb on - strand, within CSW01_05765at 1204.808 kb on - strand, within CSW01_05765at 1204.808 kb on - strand, within CSW01_05765at 1204.819 kb on + strand, within CSW01_05765at 1204.822 kb on - strand, within CSW01_05765at 1204.836 kb on + strand, within CSW01_05765at 1204.836 kb on + strand, within CSW01_05765at 1204.836 kb on + strand, within CSW01_05765at 1204.837 kb on - strand, within CSW01_05765at 1204.844 kb on - strand, within CSW01_05765at 1204.844 kb on - strand, within CSW01_05765at 1204.844 kb on - strand, within CSW01_05765at 1204.863 kb on + strand, within CSW01_05765at 1204.863 kb on + strand, within CSW01_05765at 1204.863 kb on + strand, within CSW01_05765at 1204.871 kb on - strand, within CSW01_05765at 1204.881 kb on - strand, within CSW01_05765at 1204.891 kb on + strand, within CSW01_05765at 1204.926 kb on - strand, within CSW01_05765at 1204.926 kb on - strand, within CSW01_05765at 1204.928 kb on + strand, within CSW01_05765at 1204.990 kb on + strandat 1205.086 kb on + strandat 1205.094 kb on - strandat 1205.140 kb on + strand, within CSW01_05770at 1205.140 kb on + strand, within CSW01_05770at 1205.279 kb on + strand, within CSW01_05770at 1205.287 kb on - strand, within CSW01_05770at 1205.303 kb on + strand, within CSW01_05770at 1205.311 kb on + strand, within CSW01_05770at 1205.319 kb on - strand, within CSW01_05770at 1205.321 kb on + strand, within CSW01_05770at 1205.329 kb on + strand, within CSW01_05770at 1205.336 kb on + strand, within CSW01_05770at 1205.339 kb on - strand, within CSW01_05770at 1205.341 kb on + strand, within CSW01_05770

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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1,202,365 - CSW01_05755 0.14 +0.3
1,202,365 - CSW01_05755 0.14 +1.2
1,202,365 - CSW01_05755 0.14 -0.2
1,202,389 - CSW01_05755 0.16 +0.1
1,202,393 + CSW01_05755 0.17 +1.6
1,202,393 + CSW01_05755 0.17 -0.2
1,202,472 + CSW01_05755 0.24 -0.0
1,202,472 - CSW01_05755 0.24 +0.5
1,202,514 - CSW01_05755 0.28 +0.3
1,202,516 + CSW01_05755 0.28 -0.6
1,202,631 + CSW01_05755 0.39 +0.8
1,202,727 + CSW01_05755 0.49 -0.5
1,202,840 + CSW01_05755 0.60 -0.5
1,202,840 + CSW01_05755 0.60 +1.0
1,202,840 + CSW01_05755 0.60 -1.4
1,202,840 + CSW01_05755 0.60 +1.1
1,202,840 + CSW01_05755 0.60 +0.4
1,202,840 + CSW01_05755 0.60 +0.3
1,202,840 + CSW01_05755 0.60 -0.4
1,202,848 - CSW01_05755 0.60 -0.6
1,202,848 - CSW01_05755 0.60 -0.3
1,202,848 - CSW01_05755 0.60 +0.6
1,202,862 + CSW01_05755 0.62 -0.1
1,202,870 - CSW01_05755 0.62 +0.3
1,202,870 - CSW01_05755 0.62 -0.2
1,202,893 - CSW01_05755 0.65 -1.7
1,202,898 - CSW01_05755 0.65 -0.1
1,202,972 - CSW01_05755 0.72 +0.6
1,202,980 - CSW01_05755 0.73 -0.3
1,202,996 + CSW01_05755 0.75 +2.6
1,203,017 - CSW01_05755 0.77 +0.7
1,203,055 + CSW01_05755 0.80 +0.6
1,203,121 + CSW01_05755 0.87 +0.0
1,203,129 - CSW01_05755 0.87 -0.1
1,203,131 + CSW01_05755 0.88 +0.5
1,203,131 + CSW01_05755 0.88 +0.3
1,203,131 + CSW01_05755 0.88 +1.4
1,203,131 + CSW01_05755 0.88 +0.2
1,203,131 + CSW01_05755 0.88 +0.2
1,203,131 + CSW01_05755 0.88 +0.7
1,203,131 + CSW01_05755 0.88 +0.9
1,203,131 + CSW01_05755 0.88 -0.1
1,203,131 + CSW01_05755 0.88 +0.0
1,203,131 + CSW01_05755 0.88 +1.1
1,203,131 + CSW01_05755 0.88 +0.1
1,203,131 + CSW01_05755 0.88 -0.9
1,203,131 + CSW01_05755 0.88 +0.4
1,203,131 + CSW01_05755 0.88 +0.4
1,203,131 + CSW01_05755 0.88 +0.5
1,203,131 + CSW01_05755 0.88 -0.3
1,203,131 + CSW01_05755 0.88 +0.3
1,203,131 + CSW01_05755 0.88 +0.8
1,203,131 + CSW01_05755 0.88 -0.1
1,203,131 + CSW01_05755 0.88 +0.5
1,203,131 + CSW01_05755 0.88 +0.2
1,203,131 + CSW01_05755 0.88 +0.2
1,203,131 + CSW01_05755 0.88 -0.0
1,203,131 + CSW01_05755 0.88 +0.1
1,203,131 + CSW01_05755 0.88 +0.2
1,203,131 + CSW01_05755 0.88 +0.5
1,203,139 - CSW01_05755 0.88 -0.3
1,203,139 - CSW01_05755 0.88 -1.1
1,203,139 - CSW01_05755 0.88 -0.1
1,203,139 - CSW01_05755 0.88 -0.5
1,203,139 - CSW01_05755 0.88 -0.0
1,203,139 - CSW01_05755 0.88 -0.0
1,203,139 - CSW01_05755 0.88 -0.2
1,203,139 - CSW01_05755 0.88 +0.1
1,203,139 - CSW01_05755 0.88 +0.6
1,203,139 - CSW01_05755 0.88 -0.9
1,203,139 - CSW01_05755 0.88 +0.5
1,203,139 - CSW01_05755 0.88 -2.2
1,203,139 - CSW01_05755 0.88 -0.8
1,203,139 - CSW01_05755 0.88 +0.7
1,203,139 - CSW01_05755 0.88 -0.0
1,203,139 - CSW01_05755 0.88 -0.5
1,203,139 - CSW01_05755 0.88 -0.0
1,203,139 - CSW01_05755 0.88 +0.4
1,203,139 - CSW01_05755 0.88 -0.4
1,203,139 - CSW01_05755 0.88 -0.1
1,203,139 - CSW01_05755 0.88 +0.4
1,203,150 - CSW01_05755 0.89 +0.3
1,203,263 - +0.5
1,203,411 - -0.3
1,203,425 + CSW01_05760 0.11 +0.3
1,203,427 + CSW01_05760 0.11 +1.0
1,203,427 + CSW01_05760 0.11 +0.4
1,203,427 + CSW01_05760 0.11 +0.6
1,203,432 + CSW01_05760 0.11 -0.7
1,203,489 + CSW01_05760 0.16 +1.0
1,203,489 + CSW01_05760 0.16 +0.7
1,203,497 - CSW01_05760 0.17 -0.2
1,203,497 - CSW01_05760 0.17 +0.5
1,203,499 + CSW01_05760 0.17 +0.3
1,203,541 - CSW01_05760 0.21 -0.2
1,203,619 - CSW01_05760 0.29 -0.3
1,203,656 - CSW01_05760 0.32 +1.6
1,203,688 + CSW01_05760 0.35 +0.5
1,203,708 + CSW01_05760 0.37 +0.4
1,203,729 + CSW01_05760 0.39 -0.6
1,203,753 + CSW01_05760 0.41 +0.3
1,203,761 - CSW01_05760 0.42 +0.9
1,203,761 - CSW01_05760 0.42 -0.7
1,203,761 - CSW01_05760 0.42 -1.4
1,203,761 - CSW01_05760 0.42 +0.3
1,203,780 - CSW01_05760 0.44 +0.4
1,203,817 + CSW01_05760 0.47 +0.2
1,203,831 - CSW01_05760 0.48 +1.0
1,203,855 + CSW01_05760 0.51 -0.5
1,203,866 + CSW01_05760 0.52 +0.2
1,204,019 - CSW01_05760 0.66 +0.9
1,204,044 - CSW01_05760 0.68 +0.6
1,204,044 - CSW01_05760 0.68 -0.2
1,204,080 - CSW01_05760 0.72 +0.4
1,204,109 + CSW01_05760 0.74 +0.9
1,204,111 + CSW01_05760 0.74 +0.8
1,204,119 - CSW01_05760 0.75 +2.6
1,204,177 + CSW01_05760 0.81 +0.2
1,204,203 + CSW01_05760 0.83 +0.5
1,204,209 + CSW01_05760 0.84 +0.3
1,204,217 - CSW01_05760 0.84 -0.3
1,204,260 - CSW01_05760 0.88 +0.9
1,204,292 - +0.7
1,204,328 + +1.5
1,204,328 + -0.1
1,204,344 + -0.8
1,204,344 + +0.6
1,204,369 + +0.4
1,204,369 + +0.9
1,204,377 - +0.1
1,204,377 - +0.3
1,204,377 - -1.0
1,204,687 + CSW01_05765 0.49 -0.8
1,204,689 + CSW01_05765 0.50 +1.1
1,204,689 + CSW01_05765 0.50 +0.3
1,204,689 + CSW01_05765 0.50 +0.8
1,204,689 + CSW01_05765 0.50 +0.3
1,204,689 + CSW01_05765 0.50 -0.8
1,204,689 + CSW01_05765 0.50 +1.1
1,204,695 - CSW01_05765 0.51 -0.1
1,204,696 - CSW01_05765 0.51 +0.8
1,204,696 - CSW01_05765 0.51 +1.0
1,204,697 - CSW01_05765 0.51 +0.3
1,204,697 - CSW01_05765 0.51 -0.2
1,204,697 - CSW01_05765 0.51 -0.8
1,204,702 - CSW01_05765 0.52 +0.2
1,204,702 - CSW01_05765 0.52 -0.5
1,204,754 + CSW01_05765 0.60 -0.2
1,204,774 - CSW01_05765 0.64 +0.6
1,204,792 + CSW01_05765 0.67 +0.0
1,204,798 - CSW01_05765 0.67 +1.3
1,204,800 + CSW01_05765 0.68 -0.2
1,204,800 - CSW01_05765 0.68 -0.3
1,204,808 - CSW01_05765 0.69 -0.3
1,204,808 - CSW01_05765 0.69 -0.2
1,204,808 - CSW01_05765 0.69 -0.6
1,204,808 - CSW01_05765 0.69 +0.4
1,204,819 + CSW01_05765 0.71 +0.1
1,204,822 - CSW01_05765 0.71 +0.8
1,204,836 + CSW01_05765 0.74 -1.1
1,204,836 + CSW01_05765 0.74 +0.6
1,204,836 + CSW01_05765 0.74 +0.1
1,204,837 - CSW01_05765 0.74 +0.7
1,204,844 - CSW01_05765 0.75 +0.3
1,204,844 - CSW01_05765 0.75 +0.4
1,204,844 - CSW01_05765 0.75 -0.6
1,204,863 + CSW01_05765 0.78 +0.4
1,204,863 + CSW01_05765 0.78 -0.0
1,204,863 + CSW01_05765 0.78 +0.4
1,204,871 - CSW01_05765 0.79 +0.0
1,204,881 - CSW01_05765 0.81 +0.1
1,204,891 + CSW01_05765 0.83 +1.5
1,204,926 - CSW01_05765 0.88 +0.1
1,204,926 - CSW01_05765 0.88 +0.5
1,204,928 + CSW01_05765 0.89 -0.3
1,204,990 + -0.3
1,205,086 + +0.7
1,205,094 - +0.2
1,205,140 + CSW01_05770 0.14 +0.4
1,205,140 + CSW01_05770 0.14 +1.4
1,205,279 + CSW01_05770 0.33 -0.1
1,205,287 - CSW01_05770 0.34 -0.2
1,205,303 + CSW01_05770 0.36 +0.4
1,205,311 + CSW01_05770 0.37 -0.1
1,205,319 - CSW01_05770 0.38 +0.4
1,205,321 + CSW01_05770 0.38 +0.2
1,205,329 + CSW01_05770 0.39 +0.9
1,205,336 + CSW01_05770 0.40 -0.0
1,205,339 - CSW01_05770 0.41 -0.0
1,205,341 + CSW01_05770 0.41 -0.2

Or see this region's nucleotide sequence