Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04585

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04580 and CSW01_04585 are separated by 303 nucleotidesCSW01_04585 and CSW01_04590 are separated by 620 nucleotides CSW01_04580: CSW01_04580 - flagellar motor protein MotB, at 950,421 to 951,377 _04580 CSW01_04585: CSW01_04585 - tRNA 4-thiouridine(8) synthase ThiI, at 951,681 to 953,132 _04585 CSW01_04590: CSW01_04590 - transcriptional regulator GcvA, at 953,753 to 954,673 _04590 Position (kb) 951 952 953 954Strain fitness (log2 ratio) -2 -1 0 1 2at 950.715 kb on - strand, within CSW01_04580at 950.744 kb on + strand, within CSW01_04580at 950.752 kb on - strand, within CSW01_04580at 950.779 kb on + strand, within CSW01_04580at 950.789 kb on + strand, within CSW01_04580at 950.789 kb on + strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.808 kb on + strand, within CSW01_04580at 950.865 kb on + strand, within CSW01_04580at 950.875 kb on + strand, within CSW01_04580at 950.885 kb on + strand, within CSW01_04580at 950.893 kb on - strand, within CSW01_04580at 950.893 kb on - strand, within CSW01_04580at 950.921 kb on + strand, within CSW01_04580at 950.960 kb on - strand, within CSW01_04580at 951.013 kb on - strand, within CSW01_04580at 951.127 kb on + strand, within CSW01_04580at 951.135 kb on - strand, within CSW01_04580at 951.140 kb on - strand, within CSW01_04580at 951.140 kb on - strand, within CSW01_04580at 951.145 kb on - strand, within CSW01_04580at 951.165 kb on - strand, within CSW01_04580at 951.308 kb on + strandat 951.333 kb on + strandat 951.340 kb on + strandat 951.340 kb on - strandat 951.391 kb on - strandat 951.519 kb on - strandat 951.941 kb on + strand, within CSW01_04585at 951.997 kb on + strand, within CSW01_04585at 952.085 kb on - strand, within CSW01_04585at 952.090 kb on - strand, within CSW01_04585at 952.117 kb on - strand, within CSW01_04585at 952.122 kb on - strand, within CSW01_04585at 952.182 kb on + strand, within CSW01_04585at 952.190 kb on - strand, within CSW01_04585at 952.190 kb on - strand, within CSW01_04585at 952.215 kb on + strand, within CSW01_04585at 952.290 kb on + strand, within CSW01_04585at 952.301 kb on - strand, within CSW01_04585at 952.350 kb on + strand, within CSW01_04585at 952.452 kb on + strand, within CSW01_04585at 952.460 kb on - strand, within CSW01_04585at 952.566 kb on - strand, within CSW01_04585at 952.569 kb on + strand, within CSW01_04585at 952.649 kb on + strand, within CSW01_04585at 952.808 kb on + strand, within CSW01_04585at 952.896 kb on - strand, within CSW01_04585at 952.898 kb on + strand, within CSW01_04585at 952.898 kb on + strand, within CSW01_04585at 952.906 kb on - strand, within CSW01_04585at 952.906 kb on - strand, within CSW01_04585at 952.906 kb on - strand, within CSW01_04585at 952.906 kb on - strand, within CSW01_04585at 952.906 kb on - strand, within CSW01_04585at 953.036 kb on - strandat 953.094 kb on + strandat 953.094 kb on + strandat 953.094 kb on + strandat 953.232 kb on + strandat 953.240 kb on - strandat 953.240 kb on - strandat 953.250 kb on - strandat 953.270 kb on - strandat 953.333 kb on - strandat 953.476 kb on - strandat 953.653 kb on - strandat 953.751 kb on - strandat 953.928 kb on + strand, within CSW01_04590at 954.040 kb on + strand, within CSW01_04590at 954.088 kb on - strand, within CSW01_04590at 954.117 kb on + strand, within CSW01_04590at 954.117 kb on + strand, within CSW01_04590

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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950,715 - CSW01_04580 0.31 +0.9
950,744 + CSW01_04580 0.34 +0.9
950,752 - CSW01_04580 0.35 +0.9
950,779 + CSW01_04580 0.37 +0.5
950,789 + CSW01_04580 0.38 +0.9
950,789 + CSW01_04580 0.38 +0.3
950,797 - CSW01_04580 0.39 +0.8
950,797 - CSW01_04580 0.39 +1.9
950,797 - CSW01_04580 0.39 +0.8
950,808 + CSW01_04580 0.40 -1.3
950,865 + CSW01_04580 0.46 +0.9
950,875 + CSW01_04580 0.47 -0.2
950,885 + CSW01_04580 0.48 -0.3
950,893 - CSW01_04580 0.49 +0.7
950,893 - CSW01_04580 0.49 +1.1
950,921 + CSW01_04580 0.52 -0.1
950,960 - CSW01_04580 0.56 +1.4
951,013 - CSW01_04580 0.62 +0.0
951,127 + CSW01_04580 0.74 +0.3
951,135 - CSW01_04580 0.75 +0.6
951,140 - CSW01_04580 0.75 +1.9
951,140 - CSW01_04580 0.75 +0.1
951,145 - CSW01_04580 0.76 -0.0
951,165 - CSW01_04580 0.78 -0.1
951,308 + +0.1
951,333 + +1.4
951,340 + -0.0
951,340 - +0.6
951,391 - +0.6
951,519 - +0.6
951,941 + CSW01_04585 0.18 -0.7
951,997 + CSW01_04585 0.22 -1.3
952,085 - CSW01_04585 0.28 -0.5
952,090 - CSW01_04585 0.28 -0.7
952,117 - CSW01_04585 0.30 -0.6
952,122 - CSW01_04585 0.30 -2.1
952,182 + CSW01_04585 0.35 +0.3
952,190 - CSW01_04585 0.35 +0.1
952,190 - CSW01_04585 0.35 +0.5
952,215 + CSW01_04585 0.37 +2.6
952,290 + CSW01_04585 0.42 +2.3
952,301 - CSW01_04585 0.43 -1.7
952,350 + CSW01_04585 0.46 +0.3
952,452 + CSW01_04585 0.53 -1.0
952,460 - CSW01_04585 0.54 -1.3
952,566 - CSW01_04585 0.61 +1.6
952,569 + CSW01_04585 0.61 -2.3
952,649 + CSW01_04585 0.67 +1.3
952,808 + CSW01_04585 0.78 -0.4
952,896 - CSW01_04585 0.84 -0.6
952,898 + CSW01_04585 0.84 -0.4
952,898 + CSW01_04585 0.84 -1.3
952,906 - CSW01_04585 0.84 -1.1
952,906 - CSW01_04585 0.84 +0.4
952,906 - CSW01_04585 0.84 +1.9
952,906 - CSW01_04585 0.84 -1.5
952,906 - CSW01_04585 0.84 -1.7
953,036 - -1.7
953,094 + +0.1
953,094 + -0.7
953,094 + -2.2
953,232 + -0.1
953,240 - -0.5
953,240 - +0.3
953,250 - +0.1
953,270 - +0.1
953,333 - -0.5
953,476 - +0.7
953,653 - -0.2
953,751 - +0.9
953,928 + CSW01_04590 0.19 +1.0
954,040 + CSW01_04590 0.31 +0.7
954,088 - CSW01_04590 0.36 +0.3
954,117 + CSW01_04590 0.40 +0.3
954,117 + CSW01_04590 0.40 +1.5

Or see this region's nucleotide sequence