Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04465

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04460 and CSW01_04465 are separated by 100 nucleotidesCSW01_04465 and CSW01_04470 overlap by 4 nucleotides CSW01_04460: CSW01_04460 - lytic transglycosylase F, at 928,686 to 930,278 _04460 CSW01_04465: CSW01_04465 - hypothetical protein, at 930,379 to 930,591 _04465 CSW01_04470: CSW01_04470 - phosphoribosylformylglycinamidine synthase, at 930,588 to 934,481 _04470 Position (kb) 930 931Strain fitness (log2 ratio) -1 0 1 2at 929.426 kb on - strand, within CSW01_04460at 929.523 kb on + strand, within CSW01_04460at 929.523 kb on + strand, within CSW01_04460at 929.605 kb on + strand, within CSW01_04460at 929.605 kb on + strand, within CSW01_04460at 929.613 kb on - strand, within CSW01_04460at 929.613 kb on - strand, within CSW01_04460at 929.630 kb on + strand, within CSW01_04460at 929.630 kb on + strand, within CSW01_04460at 929.638 kb on + strand, within CSW01_04460at 929.638 kb on - strand, within CSW01_04460at 929.641 kb on - strand, within CSW01_04460at 929.646 kb on - strand, within CSW01_04460at 929.655 kb on + strand, within CSW01_04460at 929.709 kb on - strand, within CSW01_04460at 929.836 kb on - strand, within CSW01_04460at 929.846 kb on + strand, within CSW01_04460at 929.846 kb on + strand, within CSW01_04460at 929.846 kb on + strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.910 kb on + strand, within CSW01_04460at 929.942 kb on + strand, within CSW01_04460at 929.951 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.960 kb on - strand, within CSW01_04460at 929.960 kb on - strand, within CSW01_04460at 929.960 kb on - strand, within CSW01_04460at 929.978 kb on - strand, within CSW01_04460at 930.005 kb on + strand, within CSW01_04460at 930.089 kb on - strand, within CSW01_04460at 930.098 kb on - strand, within CSW01_04460at 930.219 kb on - strandat 930.238 kb on - strandat 930.296 kb on + strandat 930.296 kb on + strandat 930.303 kb on + strandat 930.304 kb on - strandat 930.348 kb on + strandat 930.484 kb on - strand, within CSW01_04465at 930.503 kb on - strand, within CSW01_04465at 930.607 kb on + strandat 930.646 kb on - strandat 930.701 kb on - strandat 930.710 kb on + strandat 930.710 kb on + strandat 930.718 kb on - strandat 930.736 kb on + strandat 930.744 kb on - strandat 930.763 kb on + strandat 930.763 kb on + strandat 930.792 kb on - strandat 930.832 kb on - strandat 930.833 kb on + strandat 930.872 kb on + strandat 930.872 kb on + strandat 930.872 kb on + strandat 930.874 kb on + strandat 930.874 kb on + strandat 930.874 kb on + strandat 930.874 kb on + strandat 930.880 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.915 kb on + strandat 930.939 kb on + strandat 930.964 kb on + strandat 931.040 kb on - strand, within CSW01_04470at 931.047 kb on - strand, within CSW01_04470at 931.047 kb on - strand, within CSW01_04470at 931.135 kb on - strand, within CSW01_04470at 931.158 kb on + strand, within CSW01_04470at 931.168 kb on + strand, within CSW01_04470at 931.195 kb on + strand, within CSW01_04470at 931.220 kb on + strand, within CSW01_04470at 931.220 kb on + strand, within CSW01_04470at 931.275 kb on - strand, within CSW01_04470at 931.286 kb on + strand, within CSW01_04470at 931.306 kb on - strand, within CSW01_04470at 931.326 kb on - strand, within CSW01_04470at 931.379 kb on - strand, within CSW01_04470at 931.421 kb on + strand, within CSW01_04470at 931.508 kb on + strand, within CSW01_04470at 931.516 kb on - strand, within CSW01_04470at 931.578 kb on + strand, within CSW01_04470

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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929,426 - CSW01_04460 0.46 +0.4
929,523 + CSW01_04460 0.53 +0.4
929,523 + CSW01_04460 0.53 -1.0
929,605 + CSW01_04460 0.58 +0.7
929,605 + CSW01_04460 0.58 +0.8
929,613 - CSW01_04460 0.58 +0.2
929,613 - CSW01_04460 0.58 +0.3
929,630 + CSW01_04460 0.59 +0.5
929,630 + CSW01_04460 0.59 -0.1
929,638 + CSW01_04460 0.60 -1.3
929,638 - CSW01_04460 0.60 -0.2
929,641 - CSW01_04460 0.60 -0.7
929,646 - CSW01_04460 0.60 +1.0
929,655 + CSW01_04460 0.61 -0.0
929,709 - CSW01_04460 0.64 -0.7
929,836 - CSW01_04460 0.72 +0.2
929,846 + CSW01_04460 0.73 +1.6
929,846 + CSW01_04460 0.73 -0.1
929,846 + CSW01_04460 0.73 -0.1
929,854 - CSW01_04460 0.73 -0.3
929,854 - CSW01_04460 0.73 +0.1
929,854 - CSW01_04460 0.73 -0.1
929,854 - CSW01_04460 0.73 -0.5
929,854 - CSW01_04460 0.73 -0.7
929,910 + CSW01_04460 0.77 +0.6
929,942 + CSW01_04460 0.79 +1.4
929,951 + CSW01_04460 0.79 +0.9
929,952 + CSW01_04460 0.79 +1.5
929,952 + CSW01_04460 0.79 +0.1
929,952 + CSW01_04460 0.79 +0.3
929,952 + CSW01_04460 0.79 -0.0
929,952 + CSW01_04460 0.79 -0.1
929,952 + CSW01_04460 0.79 -0.0
929,960 - CSW01_04460 0.80 +1.6
929,960 - CSW01_04460 0.80 -0.5
929,960 - CSW01_04460 0.80 +1.3
929,978 - CSW01_04460 0.81 -0.5
930,005 + CSW01_04460 0.83 +0.8
930,089 - CSW01_04460 0.88 +0.1
930,098 - CSW01_04460 0.89 +0.6
930,219 - +0.0
930,238 - +0.8
930,296 + +0.4
930,296 + -0.3
930,303 + +0.0
930,304 - +0.3
930,348 + +0.0
930,484 - CSW01_04465 0.49 -0.2
930,503 - CSW01_04465 0.58 -0.6
930,607 + +0.3
930,646 - +0.6
930,701 - +0.4
930,710 + +0.2
930,710 + -0.2
930,718 - +0.3
930,736 + +0.5
930,744 - +0.3
930,763 + +0.2
930,763 + -0.2
930,792 - -0.4
930,832 - +0.8
930,833 + -0.6
930,872 + -0.6
930,872 + -0.6
930,872 + -0.6
930,874 + -1.5
930,874 + -0.1
930,874 + -0.5
930,874 + -0.1
930,880 - -0.0
930,882 - +0.2
930,882 - +1.9
930,882 - -0.9
930,882 - -1.3
930,882 - -0.2
930,915 + -0.5
930,939 + -1.3
930,964 + -0.4
931,040 - CSW01_04470 0.12 -0.4
931,047 - CSW01_04470 0.12 -0.0
931,047 - CSW01_04470 0.12 +0.3
931,135 - CSW01_04470 0.14 -0.0
931,158 + CSW01_04470 0.15 +0.1
931,168 + CSW01_04470 0.15 +0.2
931,195 + CSW01_04470 0.16 +0.4
931,220 + CSW01_04470 0.16 -0.6
931,220 + CSW01_04470 0.16 -0.1
931,275 - CSW01_04470 0.18 -0.4
931,286 + CSW01_04470 0.18 -0.7
931,306 - CSW01_04470 0.18 -0.3
931,326 - CSW01_04470 0.19 -0.2
931,379 - CSW01_04470 0.20 -0.5
931,421 + CSW01_04470 0.21 +0.6
931,508 + CSW01_04470 0.24 +0.6
931,516 - CSW01_04470 0.24 +0.1
931,578 + CSW01_04470 0.25 -0.5

Or see this region's nucleotide sequence