Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04195

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04190 and CSW01_04195 are separated by 0 nucleotidesCSW01_04195 and CSW01_04200 are separated by 427 nucleotidesCSW01_04200 and CSW01_04205 overlap by 16 nucleotides CSW01_04190: CSW01_04190 - DEAD/DEAH box helicase, at 865,610 to 868,549 _04190 CSW01_04195: CSW01_04195 - class I SAM-dependent methyltransferase, at 868,550 to 869,128 _04195 CSW01_04200: CSW01_04200 - XRE family transcriptional regulator, at 869,556 to 870,035 _04200 CSW01_04205: CSW01_04205 - type II toxin-antitoxin system HipA family toxin, at 870,020 to 871,390 _04205 Position (kb) 868 869 870Strain fitness (log2 ratio) -2 -1 0 1at 867.629 kb on + strand, within CSW01_04190at 867.629 kb on - strand, within CSW01_04190at 867.660 kb on - strand, within CSW01_04190at 867.660 kb on - strand, within CSW01_04190at 867.662 kb on + strand, within CSW01_04190at 867.668 kb on - strand, within CSW01_04190at 867.668 kb on - strand, within CSW01_04190at 867.766 kb on + strand, within CSW01_04190at 867.787 kb on + strand, within CSW01_04190at 867.797 kb on - strand, within CSW01_04190at 867.823 kb on + strand, within CSW01_04190at 867.891 kb on + strand, within CSW01_04190at 867.891 kb on + strand, within CSW01_04190at 867.945 kb on - strand, within CSW01_04190at 867.981 kb on + strand, within CSW01_04190at 868.012 kb on - strand, within CSW01_04190at 868.040 kb on + strand, within CSW01_04190at 868.085 kb on + strand, within CSW01_04190at 868.085 kb on + strand, within CSW01_04190at 868.085 kb on + strand, within CSW01_04190at 868.093 kb on - strand, within CSW01_04190at 868.096 kb on + strand, within CSW01_04190at 868.096 kb on + strand, within CSW01_04190at 868.096 kb on + strand, within CSW01_04190at 868.104 kb on - strand, within CSW01_04190at 868.104 kb on - strand, within CSW01_04190at 868.161 kb on + strand, within CSW01_04190at 868.206 kb on - strand, within CSW01_04190at 868.288 kb on + strandat 868.289 kb on - strandat 868.338 kb on - strandat 868.352 kb on - strandat 868.371 kb on + strandat 868.371 kb on + strandat 868.371 kb on + strandat 868.371 kb on + strandat 868.379 kb on - strandat 868.379 kb on - strandat 868.462 kb on + strandat 868.475 kb on - strandat 868.476 kb on - strandat 868.508 kb on - strandat 868.599 kb on + strandat 868.599 kb on + strandat 868.607 kb on - strandat 868.617 kb on + strand, within CSW01_04195at 868.617 kb on + strand, within CSW01_04195at 868.617 kb on + strand, within CSW01_04195at 868.710 kb on + strand, within CSW01_04195at 868.715 kb on + strand, within CSW01_04195at 868.855 kb on - strand, within CSW01_04195at 868.927 kb on - strand, within CSW01_04195at 868.988 kb on + strand, within CSW01_04195at 868.990 kb on - strand, within CSW01_04195at 869.006 kb on + strand, within CSW01_04195at 869.016 kb on + strand, within CSW01_04195at 869.019 kb on - strand, within CSW01_04195at 869.022 kb on - strand, within CSW01_04195at 869.029 kb on - strand, within CSW01_04195at 869.039 kb on - strand, within CSW01_04195at 869.045 kb on - strand, within CSW01_04195at 869.045 kb on - strand, within CSW01_04195at 869.069 kb on + strand, within CSW01_04195at 869.160 kb on + strandat 869.160 kb on + strandat 869.166 kb on + strandat 869.203 kb on + strandat 869.203 kb on + strandat 869.205 kb on + strandat 869.210 kb on - strandat 869.275 kb on + strandat 869.283 kb on - strandat 869.337 kb on - strandat 870.121 kb on + strandat 870.121 kb on + strandat 870.121 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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867,629 + CSW01_04190 0.69 -0.1
867,629 - CSW01_04190 0.69 -0.2
867,660 - CSW01_04190 0.70 -0.6
867,660 - CSW01_04190 0.70 -2.4
867,662 + CSW01_04190 0.70 -1.4
867,668 - CSW01_04190 0.70 +0.7
867,668 - CSW01_04190 0.70 -0.3
867,766 + CSW01_04190 0.73 -0.9
867,787 + CSW01_04190 0.74 -0.4
867,797 - CSW01_04190 0.74 -0.6
867,823 + CSW01_04190 0.75 +0.2
867,891 + CSW01_04190 0.78 +0.0
867,891 + CSW01_04190 0.78 -0.6
867,945 - CSW01_04190 0.79 +0.0
867,981 + CSW01_04190 0.81 -0.2
868,012 - CSW01_04190 0.82 +0.9
868,040 + CSW01_04190 0.83 +0.3
868,085 + CSW01_04190 0.84 -0.2
868,085 + CSW01_04190 0.84 -1.3
868,085 + CSW01_04190 0.84 +0.1
868,093 - CSW01_04190 0.84 -0.3
868,096 + CSW01_04190 0.85 +0.6
868,096 + CSW01_04190 0.85 +0.6
868,096 + CSW01_04190 0.85 -0.6
868,104 - CSW01_04190 0.85 -0.1
868,104 - CSW01_04190 0.85 +0.4
868,161 + CSW01_04190 0.87 -0.3
868,206 - CSW01_04190 0.88 -0.9
868,288 + +0.1
868,289 - +0.1
868,338 - -0.9
868,352 - -0.2
868,371 + +0.2
868,371 + +0.4
868,371 + +0.1
868,371 + +0.4
868,379 - -0.3
868,379 - +0.6
868,462 + +0.4
868,475 - +1.7
868,476 - +0.1
868,508 - +0.1
868,599 + -0.2
868,599 + +1.3
868,607 - +0.7
868,617 + CSW01_04195 0.12 +0.2
868,617 + CSW01_04195 0.12 -0.0
868,617 + CSW01_04195 0.12 -0.2
868,710 + CSW01_04195 0.28 -0.7
868,715 + CSW01_04195 0.28 +0.1
868,855 - CSW01_04195 0.53 -0.6
868,927 - CSW01_04195 0.65 -0.4
868,988 + CSW01_04195 0.76 +0.0
868,990 - CSW01_04195 0.76 +0.0
869,006 + CSW01_04195 0.79 -0.6
869,016 + CSW01_04195 0.80 +0.3
869,019 - CSW01_04195 0.81 -0.3
869,022 - CSW01_04195 0.82 -1.4
869,029 - CSW01_04195 0.83 -1.2
869,039 - CSW01_04195 0.84 -1.3
869,045 - CSW01_04195 0.85 -0.3
869,045 - CSW01_04195 0.85 -0.5
869,069 + CSW01_04195 0.90 +0.2
869,160 + -0.0
869,160 + +0.9
869,166 + +0.1
869,203 + +0.1
869,203 + +0.2
869,205 + -0.8
869,210 - +0.6
869,275 + -0.4
869,283 - +0.4
869,337 - +0.3
870,121 + -0.0
870,121 + -0.1
870,121 + -0.1

Or see this region's nucleotide sequence