Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03490

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03485 and CSW01_03490 are separated by 169 nucleotidesCSW01_03490 and CSW01_03495 are separated by 30 nucleotides CSW01_03485: CSW01_03485 - branched-chain amino acid transport system II carrier protein, at 706,721 to 708,034 _03485 CSW01_03490: CSW01_03490 - peptide chain release factor 2, at 708,204 to 709,302 _03490 CSW01_03495: CSW01_03495 - lysine--tRNA ligase, at 709,333 to 710,865 _03495 Position (kb) 708 709 710Strain fitness (log2 ratio) -2 -1 0 1at 707.208 kb on - strand, within CSW01_03485at 707.210 kb on + strand, within CSW01_03485at 707.240 kb on - strand, within CSW01_03485at 707.284 kb on - strand, within CSW01_03485at 707.308 kb on - strand, within CSW01_03485at 707.310 kb on - strand, within CSW01_03485at 707.372 kb on + strand, within CSW01_03485at 707.381 kb on - strand, within CSW01_03485at 707.412 kb on + strand, within CSW01_03485at 707.420 kb on - strand, within CSW01_03485at 707.420 kb on - strand, within CSW01_03485at 707.446 kb on + strand, within CSW01_03485at 707.454 kb on - strand, within CSW01_03485at 707.461 kb on + strand, within CSW01_03485at 707.469 kb on - strand, within CSW01_03485at 707.481 kb on + strand, within CSW01_03485at 707.481 kb on + strand, within CSW01_03485at 707.487 kb on - strand, within CSW01_03485at 707.489 kb on - strand, within CSW01_03485at 707.561 kb on - strand, within CSW01_03485at 707.636 kb on - strand, within CSW01_03485at 707.680 kb on + strand, within CSW01_03485at 707.688 kb on - strand, within CSW01_03485at 707.708 kb on - strand, within CSW01_03485at 707.728 kb on + strand, within CSW01_03485at 707.728 kb on + strand, within CSW01_03485at 707.728 kb on + strand, within CSW01_03485at 707.736 kb on - strand, within CSW01_03485at 707.759 kb on + strand, within CSW01_03485at 707.759 kb on + strand, within CSW01_03485at 707.767 kb on - strand, within CSW01_03485at 707.846 kb on - strand, within CSW01_03485at 707.846 kb on - strand, within CSW01_03485at 707.875 kb on - strand, within CSW01_03485at 707.903 kb on - strandat 707.923 kb on + strandat 707.939 kb on + strandat 707.974 kb on + strandat 707.977 kb on - strandat 707.977 kb on - strandat 708.037 kb on - strandat 708.047 kb on - strandat 708.058 kb on - strandat 708.058 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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707,208 - CSW01_03485 0.37 -0.0
707,210 + CSW01_03485 0.37 -0.6
707,240 - CSW01_03485 0.39 +0.1
707,284 - CSW01_03485 0.43 -0.2
707,308 - CSW01_03485 0.45 -0.3
707,310 - CSW01_03485 0.45 +0.0
707,372 + CSW01_03485 0.50 -0.1
707,381 - CSW01_03485 0.50 +0.9
707,412 + CSW01_03485 0.53 -0.7
707,420 - CSW01_03485 0.53 +0.4
707,420 - CSW01_03485 0.53 +0.3
707,446 + CSW01_03485 0.55 +1.1
707,454 - CSW01_03485 0.56 +0.6
707,461 + CSW01_03485 0.56 +0.3
707,469 - CSW01_03485 0.57 -1.0
707,481 + CSW01_03485 0.58 +1.1
707,481 + CSW01_03485 0.58 +0.7
707,487 - CSW01_03485 0.58 +0.2
707,489 - CSW01_03485 0.58 -1.4
707,561 - CSW01_03485 0.64 -0.6
707,636 - CSW01_03485 0.70 +0.2
707,680 + CSW01_03485 0.73 +0.4
707,688 - CSW01_03485 0.74 +0.0
707,708 - CSW01_03485 0.75 -2.5
707,728 + CSW01_03485 0.77 +0.2
707,728 + CSW01_03485 0.77 -1.2
707,728 + CSW01_03485 0.77 +0.7
707,736 - CSW01_03485 0.77 +0.9
707,759 + CSW01_03485 0.79 +0.3
707,759 + CSW01_03485 0.79 +0.1
707,767 - CSW01_03485 0.80 -0.7
707,846 - CSW01_03485 0.86 +0.4
707,846 - CSW01_03485 0.86 -0.1
707,875 - CSW01_03485 0.88 +0.7
707,903 - +0.8
707,923 + +0.4
707,939 + +1.2
707,974 + +0.6
707,977 - +0.2
707,977 - -0.1
708,037 - +1.3
708,047 - -0.3
708,058 - -0.1
708,058 - -0.1

Or see this region's nucleotide sequence