Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03475

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03470 and CSW01_03475 are separated by 121 nucleotidesCSW01_03475 and CSW01_03480 are separated by 87 nucleotides CSW01_03470: CSW01_03470 - peptide chain release factor 3, at 702,620 to 704,209 _03470 CSW01_03475: CSW01_03475 - ATP-dependent RNA helicase SrmB, at 704,331 to 705,602 _03475 CSW01_03480: CSW01_03480 - tRNA (adenosine(37)-N6)-methyltransferase TrmM, at 705,690 to 706,412 _03480 Position (kb) 704 705 706Strain fitness (log2 ratio) -2 -1 0 1 2at 703.389 kb on + strand, within CSW01_03470at 703.399 kb on + strand, within CSW01_03470at 703.431 kb on + strand, within CSW01_03470at 703.454 kb on + strand, within CSW01_03470at 703.598 kb on - strand, within CSW01_03470at 703.609 kb on + strand, within CSW01_03470at 703.617 kb on + strand, within CSW01_03470at 703.659 kb on + strand, within CSW01_03470at 703.659 kb on + strand, within CSW01_03470at 703.659 kb on + strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.691 kb on - strand, within CSW01_03470at 703.818 kb on + strand, within CSW01_03470at 703.826 kb on - strand, within CSW01_03470at 703.863 kb on + strand, within CSW01_03470at 703.871 kb on - strand, within CSW01_03470at 703.873 kb on + strand, within CSW01_03470at 703.881 kb on - strand, within CSW01_03470at 703.946 kb on + strand, within CSW01_03470at 703.980 kb on + strand, within CSW01_03470at 704.045 kb on - strand, within CSW01_03470at 704.071 kb on + strandat 704.102 kb on - strandat 704.112 kb on - strandat 704.188 kb on - strandat 704.307 kb on + strandat 704.328 kb on + strandat 704.618 kb on + strand, within CSW01_03475at 704.618 kb on + strand, within CSW01_03475at 704.618 kb on + strand, within CSW01_03475at 704.618 kb on + strand, within CSW01_03475at 704.618 kb on + strand, within CSW01_03475at 704.663 kb on - strand, within CSW01_03475at 705.012 kb on + strand, within CSW01_03475at 705.037 kb on - strand, within CSW01_03475at 705.037 kb on - strand, within CSW01_03475at 705.147 kb on - strand, within CSW01_03475at 705.186 kb on - strand, within CSW01_03475at 705.205 kb on + strand, within CSW01_03475at 705.237 kb on - strand, within CSW01_03475at 705.385 kb on + strand, within CSW01_03475at 705.387 kb on - strand, within CSW01_03475at 705.468 kb on + strand, within CSW01_03475at 705.468 kb on + strand, within CSW01_03475at 705.468 kb on + strand, within CSW01_03475at 705.476 kb on - strandat 705.476 kb on - strandat 705.614 kb on + strandat 705.635 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.746 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.801 kb on - strand, within CSW01_03480at 705.839 kb on - strand, within CSW01_03480at 705.870 kb on + strand, within CSW01_03480at 705.885 kb on + strand, within CSW01_03480at 705.893 kb on - strand, within CSW01_03480at 705.899 kb on + strand, within CSW01_03480at 705.931 kb on - strand, within CSW01_03480at 705.956 kb on + strand, within CSW01_03480at 705.956 kb on + strand, within CSW01_03480at 705.964 kb on - strand, within CSW01_03480at 706.015 kb on + strand, within CSW01_03480at 706.133 kb on + strand, within CSW01_03480at 706.138 kb on + strand, within CSW01_03480at 706.141 kb on - strand, within CSW01_03480at 706.146 kb on - strand, within CSW01_03480at 706.227 kb on - strand, within CSW01_03480at 706.244 kb on - strand, within CSW01_03480at 706.258 kb on - strand, within CSW01_03480at 706.335 kb on - strand, within CSW01_03480at 706.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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703,389 + CSW01_03470 0.48 -1.3
703,399 + CSW01_03470 0.49 +0.4
703,431 + CSW01_03470 0.51 -0.0
703,454 + CSW01_03470 0.52 -0.6
703,598 - CSW01_03470 0.62 +1.8
703,609 + CSW01_03470 0.62 -1.3
703,617 + CSW01_03470 0.63 -0.1
703,659 + CSW01_03470 0.65 +1.6
703,659 + CSW01_03470 0.65 +0.3
703,659 + CSW01_03470 0.65 +0.3
703,667 - CSW01_03470 0.66 -0.4
703,667 - CSW01_03470 0.66 -0.4
703,667 - CSW01_03470 0.66 +0.3
703,667 - CSW01_03470 0.66 +0.3
703,667 - CSW01_03470 0.66 +0.8
703,667 - CSW01_03470 0.66 -1.1
703,667 - CSW01_03470 0.66 -0.7
703,691 - CSW01_03470 0.67 -1.0
703,818 + CSW01_03470 0.75 +0.7
703,826 - CSW01_03470 0.76 -1.2
703,863 + CSW01_03470 0.78 -1.2
703,871 - CSW01_03470 0.79 +1.4
703,873 + CSW01_03470 0.79 +0.0
703,881 - CSW01_03470 0.79 -0.6
703,946 + CSW01_03470 0.83 +0.1
703,980 + CSW01_03470 0.86 -1.2
704,045 - CSW01_03470 0.90 +0.3
704,071 + -0.6
704,102 - -0.5
704,112 - +0.1
704,188 - +0.5
704,307 + +0.1
704,328 + +0.3
704,618 + CSW01_03475 0.23 -1.8
704,618 + CSW01_03475 0.23 +1.2
704,618 + CSW01_03475 0.23 -1.4
704,618 + CSW01_03475 0.23 -0.7
704,618 + CSW01_03475 0.23 -2.1
704,663 - CSW01_03475 0.26 -2.1
705,012 + CSW01_03475 0.54 +1.4
705,037 - CSW01_03475 0.56 -1.9
705,037 - CSW01_03475 0.56 +0.9
705,147 - CSW01_03475 0.64 +0.4
705,186 - CSW01_03475 0.67 +0.4
705,205 + CSW01_03475 0.69 -2.4
705,237 - CSW01_03475 0.71 +0.9
705,385 + CSW01_03475 0.83 +0.1
705,387 - CSW01_03475 0.83 -0.4
705,468 + CSW01_03475 0.89 +1.3
705,468 + CSW01_03475 0.89 -0.9
705,468 + CSW01_03475 0.89 +0.7
705,476 - +2.0
705,476 - -2.0
705,614 + -0.9
705,635 + +0.1
705,739 + -0.6
705,739 + -0.0
705,739 + -0.0
705,739 + +0.4
705,739 + +0.8
705,739 + +0.0
705,739 + +0.2
705,746 - +0.8
705,747 - -0.2
705,747 - -0.4
705,747 - +0.6
705,747 - +0.8
705,747 - -0.2
705,801 - CSW01_03480 0.15 +0.4
705,839 - CSW01_03480 0.21 -0.0
705,870 + CSW01_03480 0.25 +1.2
705,885 + CSW01_03480 0.27 +0.8
705,893 - CSW01_03480 0.28 -0.1
705,899 + CSW01_03480 0.29 +0.3
705,931 - CSW01_03480 0.33 -0.5
705,956 + CSW01_03480 0.37 -0.1
705,956 + CSW01_03480 0.37 +0.2
705,964 - CSW01_03480 0.38 +0.4
706,015 + CSW01_03480 0.45 +0.9
706,133 + CSW01_03480 0.61 +0.3
706,138 + CSW01_03480 0.62 +1.2
706,141 - CSW01_03480 0.62 +0.1
706,146 - CSW01_03480 0.63 -0.0
706,227 - CSW01_03480 0.74 +0.3
706,244 - CSW01_03480 0.77 -0.8
706,258 - CSW01_03480 0.79 -0.1
706,335 - CSW01_03480 0.89 +0.7
706,368 - +0.7

Or see this region's nucleotide sequence