Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02485

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02475 and CSW01_02480 are separated by 37 nucleotidesCSW01_02480 and CSW01_02485 are separated by 80 nucleotidesCSW01_02485 and CSW01_02490 are separated by 35 nucleotides CSW01_02475: CSW01_02475 - tyrosine--tRNA ligase, at 493,194 to 494,498 _02475 CSW01_02480: CSW01_02480 - Holliday junction resolvase RuvX, at 494,536 to 494,958 _02480 CSW01_02485: CSW01_02485 - YqgE/AlgH family protein, at 495,039 to 495,602 _02485 CSW01_02490: CSW01_02490 - glutathione synthetase, at 495,638 to 496,594 _02490 Position (kb) 495 496Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 494.045 kb on - strand, within CSW01_02475at 494.051 kb on + strand, within CSW01_02475at 494.141 kb on - strand, within CSW01_02475at 494.143 kb on + strand, within CSW01_02475at 494.155 kb on + strand, within CSW01_02475at 494.159 kb on + strand, within CSW01_02475at 494.216 kb on - strand, within CSW01_02475at 494.266 kb on + strand, within CSW01_02475at 494.311 kb on + strand, within CSW01_02475at 494.316 kb on + strand, within CSW01_02475at 494.316 kb on + strand, within CSW01_02475at 494.326 kb on + strand, within CSW01_02475at 494.399 kb on + strandat 494.413 kb on + strandat 494.418 kb on + strandat 494.493 kb on - strandat 494.515 kb on - strandat 494.542 kb on - strandat 495.068 kb on + strandat 495.068 kb on + strandat 495.068 kb on + strandat 495.071 kb on - strandat 495.100 kb on - strand, within CSW01_02485at 495.157 kb on - strand, within CSW01_02485at 495.160 kb on + strand, within CSW01_02485at 495.211 kb on + strand, within CSW01_02485at 495.255 kb on + strand, within CSW01_02485at 495.255 kb on + strand, within CSW01_02485at 495.263 kb on - strand, within CSW01_02485at 495.263 kb on - strand, within CSW01_02485at 495.305 kb on - strand, within CSW01_02485at 495.331 kb on - strand, within CSW01_02485at 495.350 kb on - strand, within CSW01_02485at 495.487 kb on - strand, within CSW01_02485at 495.516 kb on - strand, within CSW01_02485at 495.596 kb on + strandat 495.596 kb on + strandat 495.596 kb on + strandat 495.596 kb on + strandat 495.596 kb on + strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.614 kb on - strandat 495.622 kb on - strandat 495.625 kb on + strandat 495.644 kb on - strandat 495.672 kb on + strandat 495.701 kb on + strandat 495.711 kb on + strandat 495.890 kb on - strand, within CSW01_02490at 495.944 kb on - strand, within CSW01_02490at 495.998 kb on + strand, within CSW01_02490at 496.006 kb on - strand, within CSW01_02490at 496.006 kb on - strand, within CSW01_02490at 496.006 kb on - strand, within CSW01_02490at 496.136 kb on - strand, within CSW01_02490at 496.138 kb on - strand, within CSW01_02490at 496.149 kb on + strand, within CSW01_02490at 496.149 kb on + strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.241 kb on + strand, within CSW01_02490at 496.307 kb on + strand, within CSW01_02490at 496.315 kb on - strand, within CSW01_02490at 496.374 kb on - strand, within CSW01_02490at 496.391 kb on - strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.459 kb on - strand, within CSW01_02490at 496.463 kb on + strand, within CSW01_02490at 496.512 kb on + strandat 496.521 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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494,045 - CSW01_02475 0.65 +1.4
494,051 + CSW01_02475 0.66 -0.5
494,141 - CSW01_02475 0.73 +1.1
494,143 + CSW01_02475 0.73 +0.1
494,155 + CSW01_02475 0.74 +0.3
494,159 + CSW01_02475 0.74 -0.2
494,216 - CSW01_02475 0.78 +0.6
494,266 + CSW01_02475 0.82 +0.1
494,311 + CSW01_02475 0.86 +1.8
494,316 + CSW01_02475 0.86 +1.1
494,316 + CSW01_02475 0.86 +1.3
494,326 + CSW01_02475 0.87 -0.3
494,399 + +0.0
494,413 + +0.3
494,418 + -0.3
494,493 - +0.0
494,515 - -0.4
494,542 - -0.5
495,068 + +1.0
495,068 + +0.3
495,068 + -0.5
495,071 - +0.6
495,100 - CSW01_02485 0.11 +0.1
495,157 - CSW01_02485 0.21 +0.1
495,160 + CSW01_02485 0.21 -0.7
495,211 + CSW01_02485 0.30 -0.1
495,255 + CSW01_02485 0.38 -0.6
495,255 + CSW01_02485 0.38 +0.3
495,263 - CSW01_02485 0.40 +0.4
495,263 - CSW01_02485 0.40 -0.3
495,305 - CSW01_02485 0.47 +0.5
495,331 - CSW01_02485 0.52 +0.3
495,350 - CSW01_02485 0.55 -0.1
495,487 - CSW01_02485 0.79 +0.3
495,516 - CSW01_02485 0.85 +0.2
495,596 + +0.3
495,596 + -0.2
495,596 + +0.6
495,596 + -0.9
495,596 + -0.4
495,604 - +0.2
495,604 - -0.2
495,604 - +0.2
495,604 - -0.2
495,604 - -0.4
495,614 - +0.3
495,622 - +0.3
495,625 + -1.4
495,644 - -0.1
495,672 + +0.3
495,701 + -0.7
495,711 + +0.9
495,890 - CSW01_02490 0.26 -0.5
495,944 - CSW01_02490 0.32 +0.6
495,998 + CSW01_02490 0.38 -2.0
496,006 - CSW01_02490 0.38 -0.6
496,006 - CSW01_02490 0.38 -2.1
496,006 - CSW01_02490 0.38 +1.6
496,136 - CSW01_02490 0.52 -0.7
496,138 - CSW01_02490 0.52 -0.5
496,149 + CSW01_02490 0.53 -3.0
496,149 + CSW01_02490 0.53 -0.6
496,157 - CSW01_02490 0.54 -1.0
496,157 - CSW01_02490 0.54 -2.0
496,157 - CSW01_02490 0.54 -1.4
496,157 - CSW01_02490 0.54 +0.7
496,157 - CSW01_02490 0.54 +0.1
496,157 - CSW01_02490 0.54 -0.0
496,157 - CSW01_02490 0.54 +0.6
496,241 + CSW01_02490 0.63 -0.4
496,307 + CSW01_02490 0.70 -3.4
496,315 - CSW01_02490 0.71 +0.0
496,374 - CSW01_02490 0.77 -0.6
496,391 - CSW01_02490 0.79 -0.5
496,444 + CSW01_02490 0.84 -1.0
496,444 + CSW01_02490 0.84 -2.6
496,444 + CSW01_02490 0.84 +0.4
496,444 + CSW01_02490 0.84 +0.6
496,444 + CSW01_02490 0.84 +0.6
496,444 + CSW01_02490 0.84 -2.2
496,452 - CSW01_02490 0.85 +1.2
496,452 - CSW01_02490 0.85 -0.4
496,452 - CSW01_02490 0.85 +0.3
496,452 - CSW01_02490 0.85 -0.3
496,452 - CSW01_02490 0.85 +1.6
496,452 - CSW01_02490 0.85 +0.2
496,452 - CSW01_02490 0.85 -0.7
496,452 - CSW01_02490 0.85 -0.4
496,452 - CSW01_02490 0.85 +0.0
496,452 - CSW01_02490 0.85 +0.6
496,459 - CSW01_02490 0.86 +1.6
496,463 + CSW01_02490 0.86 +1.0
496,512 + -0.2
496,521 - -1.6

Or see this region's nucleotide sequence