Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02185

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02180 and CSW01_02185 are separated by 167 nucleotidesCSW01_02185 and CSW01_02190 are separated by 56 nucleotidesCSW01_02190 and CSW01_02195 overlap by 14 nucleotides CSW01_02180: CSW01_02180 - MSHA biogenesis protein MshQ, at 436,970 to 440,728 _02180 CSW01_02185: CSW01_02185 - rod shape-determining protein, at 440,896 to 441,939 _02185 CSW01_02190: CSW01_02190 - rod shape-determining protein MreC, at 441,996 to 442,886 _02190 CSW01_02195: CSW01_02195 - rod shape-determining protein MreD, at 442,873 to 443,361 _02195 Position (kb) 440 441 442Strain fitness (log2 ratio) -2 -1 0 1at 439.917 kb on - strand, within CSW01_02180at 439.917 kb on - strand, within CSW01_02180at 439.990 kb on + strand, within CSW01_02180at 439.998 kb on - strand, within CSW01_02180at 440.019 kb on - strand, within CSW01_02180at 440.084 kb on + strand, within CSW01_02180at 440.094 kb on + strand, within CSW01_02180at 440.094 kb on + strand, within CSW01_02180at 440.094 kb on + strand, within CSW01_02180at 440.100 kb on + strand, within CSW01_02180at 440.102 kb on - strand, within CSW01_02180at 440.133 kb on - strand, within CSW01_02180at 440.137 kb on + strand, within CSW01_02180at 440.145 kb on - strand, within CSW01_02180at 440.234 kb on - strand, within CSW01_02180at 440.239 kb on - strand, within CSW01_02180at 440.248 kb on + strand, within CSW01_02180at 440.248 kb on + strand, within CSW01_02180at 440.275 kb on + strand, within CSW01_02180at 440.289 kb on + strand, within CSW01_02180at 440.299 kb on + strand, within CSW01_02180at 440.299 kb on + strand, within CSW01_02180at 440.305 kb on - strand, within CSW01_02180at 440.319 kb on + strand, within CSW01_02180at 440.332 kb on + strand, within CSW01_02180at 440.332 kb on + strand, within CSW01_02180at 440.364 kb on - strandat 440.364 kb on - strandat 440.375 kb on + strandat 440.375 kb on + strandat 440.375 kb on + strandat 440.383 kb on + strandat 440.383 kb on + strandat 440.383 kb on - strandat 440.388 kb on + strandat 440.468 kb on - strandat 440.480 kb on + strandat 440.488 kb on - strandat 440.488 kb on - strandat 440.522 kb on + strandat 440.522 kb on + strandat 440.562 kb on + strandat 440.562 kb on + strandat 440.657 kb on + strandat 440.702 kb on - strandat 441.934 kb on + strandat 441.934 kb on + strandat 441.934 kb on + strandat 441.934 kb on + strandat 441.934 kb on + strandat 441.946 kb on + strandat 441.946 kb on + strandat 441.972 kb on + strandat 441.977 kb on + strandat 442.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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439,917 - CSW01_02180 0.78 +0.1
439,917 - CSW01_02180 0.78 +0.9
439,990 + CSW01_02180 0.80 +0.9
439,998 - CSW01_02180 0.81 +0.6
440,019 - CSW01_02180 0.81 +0.0
440,084 + CSW01_02180 0.83 +0.8
440,094 + CSW01_02180 0.83 +0.4
440,094 + CSW01_02180 0.83 +1.0
440,094 + CSW01_02180 0.83 +1.0
440,100 + CSW01_02180 0.83 +0.8
440,102 - CSW01_02180 0.83 +0.5
440,133 - CSW01_02180 0.84 +0.9
440,137 + CSW01_02180 0.84 +0.7
440,145 - CSW01_02180 0.84 +0.3
440,234 - CSW01_02180 0.87 +0.4
440,239 - CSW01_02180 0.87 +0.6
440,248 + CSW01_02180 0.87 +0.5
440,248 + CSW01_02180 0.87 -0.1
440,275 + CSW01_02180 0.88 -0.0
440,289 + CSW01_02180 0.88 -0.1
440,299 + CSW01_02180 0.89 +0.7
440,299 + CSW01_02180 0.89 +1.0
440,305 - CSW01_02180 0.89 +0.6
440,319 + CSW01_02180 0.89 +0.8
440,332 + CSW01_02180 0.89 +0.7
440,332 + CSW01_02180 0.89 +0.5
440,364 - +0.4
440,364 - +0.5
440,375 + -1.9
440,375 + +0.9
440,375 + +0.5
440,383 + +0.3
440,383 + +0.3
440,383 - +0.1
440,388 + -0.1
440,468 - +0.7
440,480 + +1.0
440,488 - +0.3
440,488 - -0.1
440,522 + +0.3
440,522 + -0.7
440,562 + -0.0
440,562 + +0.3
440,657 + +1.0
440,702 - +0.7
441,934 + +0.3
441,934 + -0.3
441,934 + -0.5
441,934 + +0.6
441,934 + +0.7
441,946 + -0.0
441,946 + +0.3
441,972 + -0.3
441,977 + -0.1
442,868 + +0.2

Or see this region's nucleotide sequence