Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02085

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02080 and CSW01_02085 are separated by 155 nucleotidesCSW01_02085 and CSW01_02090 are separated by 169 nucleotides CSW01_02080: CSW01_02080 - UvrABC system protein A, at 416,396 to 419,218 _02080 CSW01_02085: CSW01_02085 - UTP--glucose-1-phosphate uridylyltransferase, at 419,374 to 420,249 _02085 CSW01_02090: CSW01_02090 - helix-turn-helix transcriptional regulator, at 420,419 to 421,063 _02090 Position (kb) 419 420 421Strain fitness (log2 ratio) -2 -1 0 1 2 3at 418.426 kb on - strand, within CSW01_02080at 418.426 kb on - strand, within CSW01_02080at 418.559 kb on + strand, within CSW01_02080at 418.559 kb on + strand, within CSW01_02080at 418.564 kb on + strand, within CSW01_02080at 418.579 kb on + strand, within CSW01_02080at 418.579 kb on - strand, within CSW01_02080at 418.592 kb on - strand, within CSW01_02080at 418.594 kb on + strand, within CSW01_02080at 418.594 kb on + strand, within CSW01_02080at 418.594 kb on + strand, within CSW01_02080at 418.725 kb on + strand, within CSW01_02080at 418.733 kb on - strand, within CSW01_02080at 418.733 kb on - strand, within CSW01_02080at 418.748 kb on - strand, within CSW01_02080at 418.771 kb on + strand, within CSW01_02080at 418.819 kb on + strand, within CSW01_02080at 418.827 kb on - strand, within CSW01_02080at 418.858 kb on - strand, within CSW01_02080at 418.886 kb on + strand, within CSW01_02080at 418.894 kb on - strand, within CSW01_02080at 418.901 kb on + strand, within CSW01_02080at 418.909 kb on + strand, within CSW01_02080at 419.035 kb on - strandat 419.042 kb on + strandat 419.050 kb on - strandat 419.087 kb on - strandat 419.087 kb on - strandat 419.105 kb on + strandat 419.115 kb on + strandat 419.115 kb on + strandat 419.128 kb on - strandat 419.133 kb on - strandat 419.216 kb on + strandat 419.221 kb on + strandat 419.229 kb on - strandat 419.251 kb on - strandat 419.252 kb on + strandat 419.252 kb on + strandat 419.252 kb on + strandat 419.252 kb on + strandat 419.252 kb on + strandat 419.252 kb on + strandat 419.260 kb on - strandat 419.260 kb on - strandat 419.260 kb on - strandat 419.260 kb on - strandat 419.260 kb on - strandat 419.260 kb on - strandat 419.367 kb on - strandat 419.472 kb on - strand, within CSW01_02085at 419.478 kb on - strand, within CSW01_02085at 419.502 kb on - strand, within CSW01_02085at 419.528 kb on - strand, within CSW01_02085at 419.540 kb on + strand, within CSW01_02085at 419.653 kb on + strand, within CSW01_02085at 419.653 kb on + strand, within CSW01_02085at 419.671 kb on - strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.806 kb on - strand, within CSW01_02085at 419.808 kb on + strand, within CSW01_02085at 419.808 kb on + strand, within CSW01_02085at 419.868 kb on - strand, within CSW01_02085at 419.905 kb on + strand, within CSW01_02085at 419.927 kb on - strand, within CSW01_02085at 419.928 kb on - strand, within CSW01_02085at 420.032 kb on + strand, within CSW01_02085at 420.109 kb on + strand, within CSW01_02085at 420.128 kb on + strand, within CSW01_02085at 420.169 kb on - strandat 420.259 kb on + strandat 420.289 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.321 kb on - strandat 420.401 kb on + strandat 420.409 kb on - strandat 420.409 kb on - strandat 420.409 kb on - strandat 420.414 kb on - strandat 420.416 kb on - strandat 420.438 kb on + strandat 420.438 kb on + strandat 420.619 kb on + strand, within CSW01_02090at 420.642 kb on + strand, within CSW01_02090at 420.644 kb on - strand, within CSW01_02090at 420.694 kb on - strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.734 kb on + strand, within CSW01_02090at 420.743 kb on + strand, within CSW01_02090at 420.744 kb on + strand, within CSW01_02090at 420.752 kb on - strand, within CSW01_02090at 420.756 kb on + strand, within CSW01_02090at 420.756 kb on + strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.766 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.853 kb on - strand, within CSW01_02090at 420.932 kb on + strand, within CSW01_02090at 420.945 kb on + strand, within CSW01_02090at 420.976 kb on + strand, within CSW01_02090at 421.016 kb on - strandat 421.144 kb on + strandat 421.157 kb on + strandat 421.165 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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418,426 - CSW01_02080 0.72 +0.2
418,426 - CSW01_02080 0.72 +1.8
418,559 + CSW01_02080 0.77 +0.3
418,559 + CSW01_02080 0.77 -0.4
418,564 + CSW01_02080 0.77 -0.1
418,579 + CSW01_02080 0.77 +0.1
418,579 - CSW01_02080 0.77 +1.4
418,592 - CSW01_02080 0.78 -0.5
418,594 + CSW01_02080 0.78 -0.1
418,594 + CSW01_02080 0.78 -0.6
418,594 + CSW01_02080 0.78 +0.4
418,725 + CSW01_02080 0.83 -0.3
418,733 - CSW01_02080 0.83 +0.6
418,733 - CSW01_02080 0.83 -0.7
418,748 - CSW01_02080 0.83 -0.8
418,771 + CSW01_02080 0.84 -0.3
418,819 + CSW01_02080 0.86 +0.5
418,827 - CSW01_02080 0.86 +0.1
418,858 - CSW01_02080 0.87 -0.5
418,886 + CSW01_02080 0.88 -0.5
418,894 - CSW01_02080 0.88 +2.3
418,901 + CSW01_02080 0.89 +0.7
418,909 + CSW01_02080 0.89 -0.4
419,035 - +0.3
419,042 + -0.5
419,050 - +0.0
419,087 - +0.1
419,087 - -0.6
419,105 + -0.5
419,115 + -0.0
419,115 + -0.6
419,128 - +0.9
419,133 - +0.4
419,216 + +0.0
419,221 + -2.2
419,229 - +0.9
419,251 - +0.2
419,252 + +0.1
419,252 + +0.0
419,252 + +0.6
419,252 + +0.4
419,252 + -0.1
419,252 + +0.4
419,260 - +0.4
419,260 - +0.3
419,260 - -1.2
419,260 - -2.3
419,260 - -0.4
419,260 - +1.0
419,367 - +1.2
419,472 - CSW01_02085 0.11 +1.0
419,478 - CSW01_02085 0.12 -0.5
419,502 - CSW01_02085 0.15 -2.0
419,528 - CSW01_02085 0.18 +0.6
419,540 + CSW01_02085 0.19 -2.6
419,653 + CSW01_02085 0.32 -0.9
419,653 + CSW01_02085 0.32 +0.2
419,671 - CSW01_02085 0.34 +0.7
419,767 + CSW01_02085 0.45 -0.6
419,767 + CSW01_02085 0.45 -0.4
419,767 + CSW01_02085 0.45 +0.7
419,767 + CSW01_02085 0.45 +0.0
419,767 + CSW01_02085 0.45 +0.7
419,767 + CSW01_02085 0.45 +0.0
419,767 + CSW01_02085 0.45 +0.7
419,767 + CSW01_02085 0.45 +1.3
419,775 - CSW01_02085 0.46 +0.3
419,775 - CSW01_02085 0.46 -0.5
419,775 - CSW01_02085 0.46 +0.3
419,775 - CSW01_02085 0.46 -0.9
419,775 - CSW01_02085 0.46 -0.9
419,775 - CSW01_02085 0.46 -0.2
419,806 - CSW01_02085 0.49 -0.4
419,808 + CSW01_02085 0.50 -0.2
419,808 + CSW01_02085 0.50 -1.9
419,868 - CSW01_02085 0.56 -0.6
419,905 + CSW01_02085 0.61 -1.6
419,927 - CSW01_02085 0.63 -1.3
419,928 - CSW01_02085 0.63 -0.5
420,032 + CSW01_02085 0.75 -1.6
420,109 + CSW01_02085 0.84 -0.3
420,128 + CSW01_02085 0.86 +1.3
420,169 - +0.9
420,259 + -0.0
420,289 + +0.7
420,313 + +0.4
420,313 + +0.8
420,313 + +0.5
420,313 + +0.6
420,313 + +0.1
420,321 - +0.4
420,401 + +0.6
420,409 - +1.2
420,409 - +1.6
420,409 - -0.3
420,414 - +0.5
420,416 - +0.4
420,438 + +1.7
420,438 + +0.9
420,619 + CSW01_02090 0.31 +0.4
420,642 + CSW01_02090 0.35 +0.9
420,644 - CSW01_02090 0.35 +0.2
420,694 - CSW01_02090 0.43 +0.0
420,706 + CSW01_02090 0.44 -0.1
420,706 + CSW01_02090 0.44 +0.3
420,706 + CSW01_02090 0.44 +2.2
420,706 + CSW01_02090 0.44 +0.8
420,706 + CSW01_02090 0.44 +0.9
420,706 + CSW01_02090 0.44 +0.4
420,706 + CSW01_02090 0.44 +0.7
420,706 + CSW01_02090 0.44 -0.1
420,714 - CSW01_02090 0.46 -0.8
420,714 - CSW01_02090 0.46 +0.5
420,714 - CSW01_02090 0.46 +1.0
420,714 - CSW01_02090 0.46 +0.5
420,714 - CSW01_02090 0.46 +0.8
420,714 - CSW01_02090 0.46 +2.0
420,714 - CSW01_02090 0.46 +0.9
420,714 - CSW01_02090 0.46 -0.0
420,734 + CSW01_02090 0.49 +0.5
420,743 + CSW01_02090 0.50 +1.1
420,744 + CSW01_02090 0.50 +1.6
420,752 - CSW01_02090 0.52 +0.5
420,756 + CSW01_02090 0.52 +0.0
420,756 + CSW01_02090 0.52 +0.4
420,764 - CSW01_02090 0.53 +0.2
420,764 - CSW01_02090 0.53 +1.5
420,764 - CSW01_02090 0.53 +2.9
420,764 - CSW01_02090 0.53 +0.5
420,766 + CSW01_02090 0.54 +0.3
420,844 + CSW01_02090 0.66 +1.3
420,844 + CSW01_02090 0.66 -0.1
420,844 + CSW01_02090 0.66 +0.8
420,852 - CSW01_02090 0.67 +0.3
420,852 - CSW01_02090 0.67 +0.6
420,852 - CSW01_02090 0.67 +0.4
420,852 - CSW01_02090 0.67 +0.6
420,852 - CSW01_02090 0.67 -0.4
420,852 - CSW01_02090 0.67 +0.6
420,853 - CSW01_02090 0.67 +1.4
420,932 + CSW01_02090 0.80 -0.7
420,945 + CSW01_02090 0.82 +0.5
420,976 + CSW01_02090 0.86 +1.5
421,016 - +0.1
421,144 + +0.5
421,157 + +1.2
421,165 - +0.6

Or see this region's nucleotide sequence