Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02015

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02010 and CSW01_02015 overlap by 1 nucleotidesCSW01_02015 and CSW01_02020 overlap by 8 nucleotides CSW01_02010: CSW01_02010 - assimilatory sulfite reductase (NADPH) flavoprotein subunit, at 395,617 to 397,461 _02010 CSW01_02015: CSW01_02015 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 397,461 to 399,194 _02015 CSW01_02020: CSW01_02020 - phosphoadenosine phosphosulfate reductase, at 399,187 to 399,948 _02020 Position (kb) 397 398 399 400Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 396.519 kb on + strand, within CSW01_02010at 396.520 kb on + strand, within CSW01_02010at 396.531 kb on + strand, within CSW01_02010at 396.547 kb on - strand, within CSW01_02010at 396.565 kb on + strand, within CSW01_02010at 396.674 kb on + strand, within CSW01_02010at 396.789 kb on + strand, within CSW01_02010at 396.789 kb on - strand, within CSW01_02010at 396.796 kb on + strand, within CSW01_02010at 396.806 kb on + strand, within CSW01_02010at 396.833 kb on + strand, within CSW01_02010at 396.894 kb on + strand, within CSW01_02010at 396.910 kb on + strand, within CSW01_02010at 396.910 kb on + strand, within CSW01_02010at 397.018 kb on - strand, within CSW01_02010at 397.034 kb on - strand, within CSW01_02010at 397.034 kb on - strand, within CSW01_02010at 397.199 kb on + strand, within CSW01_02010at 397.236 kb on + strand, within CSW01_02010at 397.297 kb on + strandat 397.362 kb on - strandat 397.402 kb on + strandat 397.423 kb on - strandat 397.432 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.463 kb on - strandat 397.463 kb on - strandat 397.463 kb on - strandat 397.485 kb on + strandat 397.506 kb on + strandat 397.527 kb on - strandat 397.619 kb on + strandat 397.626 kb on - strandat 397.696 kb on - strand, within CSW01_02015at 397.713 kb on + strand, within CSW01_02015at 397.713 kb on + strand, within CSW01_02015at 397.721 kb on - strand, within CSW01_02015at 397.731 kb on - strand, within CSW01_02015at 397.740 kb on + strand, within CSW01_02015at 397.745 kb on + strand, within CSW01_02015at 397.805 kb on - strand, within CSW01_02015at 397.807 kb on - strand, within CSW01_02015at 397.882 kb on + strand, within CSW01_02015at 397.946 kb on - strand, within CSW01_02015at 397.948 kb on + strand, within CSW01_02015at 397.948 kb on + strand, within CSW01_02015at 397.948 kb on + strand, within CSW01_02015at 397.949 kb on + strand, within CSW01_02015at 397.991 kb on - strand, within CSW01_02015at 397.991 kb on - strand, within CSW01_02015at 397.991 kb on - strand, within CSW01_02015at 398.218 kb on + strand, within CSW01_02015at 398.218 kb on + strand, within CSW01_02015at 398.218 kb on + strand, within CSW01_02015at 398.218 kb on + strand, within CSW01_02015at 398.258 kb on + strand, within CSW01_02015at 398.526 kb on - strand, within CSW01_02015at 398.648 kb on + strand, within CSW01_02015at 398.712 kb on - strand, within CSW01_02015at 398.712 kb on - strand, within CSW01_02015at 398.714 kb on + strand, within CSW01_02015at 398.719 kb on + strand, within CSW01_02015at 398.719 kb on + strand, within CSW01_02015at 398.775 kb on - strand, within CSW01_02015at 398.917 kb on + strand, within CSW01_02015at 398.917 kb on + strand, within CSW01_02015at 399.030 kb on - strandat 399.083 kb on + strandat 399.282 kb on + strand, within CSW01_02020at 399.381 kb on - strand, within CSW01_02020at 399.483 kb on + strand, within CSW01_02020at 399.610 kb on - strand, within CSW01_02020at 399.665 kb on + strand, within CSW01_02020at 399.916 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
remove
396,519 + CSW01_02010 0.49 -0.3
396,520 + CSW01_02010 0.49 -2.3
396,531 + CSW01_02010 0.50 -0.6
396,547 - CSW01_02010 0.50 -1.6
396,565 + CSW01_02010 0.51 -1.0
396,674 + CSW01_02010 0.57 -0.9
396,789 + CSW01_02010 0.64 -0.4
396,789 - CSW01_02010 0.64 -1.6
396,796 + CSW01_02010 0.64 +0.0
396,806 + CSW01_02010 0.64 +0.7
396,833 + CSW01_02010 0.66 +0.1
396,894 + CSW01_02010 0.69 +0.2
396,910 + CSW01_02010 0.70 +0.7
396,910 + CSW01_02010 0.70 +0.2
397,018 - CSW01_02010 0.76 +0.7
397,034 - CSW01_02010 0.77 -0.3
397,034 - CSW01_02010 0.77 -4.0
397,199 + CSW01_02010 0.86 +0.1
397,236 + CSW01_02010 0.88 -0.4
397,297 + +1.0
397,362 - -3.3
397,402 + -0.3
397,423 - -1.3
397,432 + +0.1
397,455 + +1.5
397,455 + -0.3
397,455 + -0.4
397,455 + +0.5
397,455 + +0.7
397,455 + +0.1
397,455 + -1.3
397,463 - -1.9
397,463 - -2.9
397,463 - -0.2
397,485 + -1.7
397,506 + -0.9
397,527 - -2.8
397,619 + -1.0
397,626 - -0.3
397,696 - CSW01_02015 0.14 -2.5
397,713 + CSW01_02015 0.15 +1.2
397,713 + CSW01_02015 0.15 -0.9
397,721 - CSW01_02015 0.15 +0.4
397,731 - CSW01_02015 0.16 +0.7
397,740 + CSW01_02015 0.16 -0.9
397,745 + CSW01_02015 0.16 +1.3
397,805 - CSW01_02015 0.20 -1.4
397,807 - CSW01_02015 0.20 -0.7
397,882 + CSW01_02015 0.24 -2.0
397,946 - CSW01_02015 0.28 -0.3
397,948 + CSW01_02015 0.28 -0.9
397,948 + CSW01_02015 0.28 -0.2
397,948 + CSW01_02015 0.28 -1.9
397,949 + CSW01_02015 0.28 -2.3
397,991 - CSW01_02015 0.31 -0.9
397,991 - CSW01_02015 0.31 -0.3
397,991 - CSW01_02015 0.31 +2.3
398,218 + CSW01_02015 0.44 -2.0
398,218 + CSW01_02015 0.44 -0.6
398,218 + CSW01_02015 0.44 -1.8
398,218 + CSW01_02015 0.44 +0.7
398,258 + CSW01_02015 0.46 -0.6
398,526 - CSW01_02015 0.61 -0.9
398,648 + CSW01_02015 0.68 -0.6
398,712 - CSW01_02015 0.72 -2.8
398,712 - CSW01_02015 0.72 -2.9
398,714 + CSW01_02015 0.72 +1.1
398,719 + CSW01_02015 0.73 -1.4
398,719 + CSW01_02015 0.73 +0.2
398,775 - CSW01_02015 0.76 -1.3
398,917 + CSW01_02015 0.84 -0.8
398,917 + CSW01_02015 0.84 -1.2
399,030 - -2.3
399,083 + -0.4
399,282 + CSW01_02020 0.12 -2.1
399,381 - CSW01_02020 0.25 -1.6
399,483 + CSW01_02020 0.39 -1.5
399,610 - CSW01_02020 0.56 -1.6
399,665 + CSW01_02020 0.63 -1.3
399,916 - -2.6

Or see this region's nucleotide sequence