Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01865

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01850 and CSW01_01855 are separated by 42 nucleotidesCSW01_01855 and CSW01_01860 are separated by 40 nucleotidesCSW01_01860 and CSW01_01865 are separated by 2 nucleotidesCSW01_01865 and CSW01_01870 are separated by 136 nucleotides CSW01_01850: CSW01_01850 - protease modulator HflC, at 371,711 to 372,691 _01850 CSW01_01855: CSW01_01855 - DUF2065 domain-containing protein, at 372,734 to 372,940 _01855 CSW01_01860: CSW01_01860 - SlyX protein, at 372,981 to 373,208 _01860 CSW01_01865: CSW01_01865 - hypothetical protein, at 373,211 to 374,194 _01865 CSW01_01870: CSW01_01870 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 374,331 to 375,110 _01870 Position (kb) 373 374 375Strain fitness (log2 ratio) -1 0 1 2 3at 372.214 kb on + strand, within CSW01_01850at 372.261 kb on - strand, within CSW01_01850at 372.389 kb on + strand, within CSW01_01850at 372.464 kb on - strand, within CSW01_01850at 372.479 kb on - strand, within CSW01_01850at 372.632 kb on + strandat 372.648 kb on - strandat 372.704 kb on - strandat 372.719 kb on - strandat 372.729 kb on - strandat 372.762 kb on + strand, within CSW01_01855at 372.762 kb on + strand, within CSW01_01855at 372.780 kb on + strand, within CSW01_01855at 372.863 kb on - strand, within CSW01_01855at 372.928 kb on - strandat 373.012 kb on + strand, within CSW01_01860at 373.020 kb on - strand, within CSW01_01860at 373.089 kb on - strand, within CSW01_01860at 373.123 kb on - strand, within CSW01_01860at 373.186 kb on - strandat 373.230 kb on + strandat 373.237 kb on - strandat 373.243 kb on + strandat 373.243 kb on + strandat 373.248 kb on + strandat 373.292 kb on + strandat 373.300 kb on - strandat 373.369 kb on - strand, within CSW01_01865at 373.382 kb on + strand, within CSW01_01865at 373.477 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.485 kb on - strand, within CSW01_01865at 373.490 kb on - strand, within CSW01_01865at 373.615 kb on - strand, within CSW01_01865at 373.625 kb on - strand, within CSW01_01865at 373.653 kb on + strand, within CSW01_01865at 373.695 kb on + strand, within CSW01_01865at 373.742 kb on + strand, within CSW01_01865at 373.750 kb on - strand, within CSW01_01865at 373.810 kb on + strand, within CSW01_01865at 373.810 kb on + strand, within CSW01_01865at 373.818 kb on - strand, within CSW01_01865at 373.818 kb on - strand, within CSW01_01865at 373.831 kb on - strand, within CSW01_01865at 373.905 kb on - strand, within CSW01_01865at 373.950 kb on + strand, within CSW01_01865at 373.958 kb on - strand, within CSW01_01865at 373.958 kb on - strand, within CSW01_01865at 373.958 kb on - strand, within CSW01_01865at 373.958 kb on - strand, within CSW01_01865at 373.958 kb on - strand, within CSW01_01865at 373.963 kb on - strand, within CSW01_01865at 374.029 kb on + strand, within CSW01_01865at 374.034 kb on + strand, within CSW01_01865at 374.039 kb on + strand, within CSW01_01865at 374.042 kb on - strand, within CSW01_01865at 374.078 kb on + strand, within CSW01_01865at 374.171 kb on - strandat 374.221 kb on + strandat 374.459 kb on + strand, within CSW01_01870at 374.459 kb on + strand, within CSW01_01870at 374.467 kb on - strand, within CSW01_01870at 374.584 kb on + strand, within CSW01_01870at 374.584 kb on + strand, within CSW01_01870at 374.592 kb on - strand, within CSW01_01870at 374.594 kb on + strand, within CSW01_01870at 374.625 kb on + strand, within CSW01_01870at 374.633 kb on - strand, within CSW01_01870at 374.681 kb on + strand, within CSW01_01870at 374.760 kb on - strand, within CSW01_01870at 374.792 kb on + strand, within CSW01_01870at 374.801 kb on - strand, within CSW01_01870at 374.808 kb on - strand, within CSW01_01870at 374.826 kb on + strand, within CSW01_01870at 374.836 kb on - strand, within CSW01_01870at 374.864 kb on + strand, within CSW01_01870at 374.895 kb on - strand, within CSW01_01870at 374.907 kb on + strand, within CSW01_01870at 374.915 kb on - strand, within CSW01_01870at 374.952 kb on - strand, within CSW01_01870at 374.974 kb on + strand, within CSW01_01870at 375.008 kb on + strand, within CSW01_01870at 375.008 kb on + strand, within CSW01_01870at 375.008 kb on + strand, within CSW01_01870at 375.008 kb on + strand, within CSW01_01870at 375.008 kb on + strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.139 kb on + strandat 375.166 kb on - strandat 375.167 kb on - strandat 375.177 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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372,214 + CSW01_01850 0.51 +0.3
372,261 - CSW01_01850 0.56 -1.7
372,389 + CSW01_01850 0.69 +1.8
372,464 - CSW01_01850 0.77 +1.0
372,479 - CSW01_01850 0.78 +0.2
372,632 + +0.6
372,648 - +0.9
372,704 - +0.1
372,719 - +0.1
372,729 - +0.5
372,762 + CSW01_01855 0.14 +0.5
372,762 + CSW01_01855 0.14 -0.6
372,780 + CSW01_01855 0.22 +1.0
372,863 - CSW01_01855 0.62 -0.2
372,928 - +0.5
373,012 + CSW01_01860 0.14 +1.0
373,020 - CSW01_01860 0.17 -0.0
373,089 - CSW01_01860 0.47 +0.4
373,123 - CSW01_01860 0.62 -0.5
373,186 - -0.5
373,230 + +0.3
373,237 - +0.7
373,243 + +0.4
373,243 + +1.1
373,248 + -0.0
373,292 + +1.7
373,300 - +1.1
373,369 - CSW01_01865 0.16 +1.9
373,382 + CSW01_01865 0.17 +0.8
373,477 + CSW01_01865 0.27 +0.4
373,482 + CSW01_01865 0.28 +0.6
373,482 + CSW01_01865 0.28 +0.3
373,482 + CSW01_01865 0.28 +0.2
373,482 + CSW01_01865 0.28 +1.7
373,482 + CSW01_01865 0.28 +1.1
373,485 - CSW01_01865 0.28 +0.8
373,490 - CSW01_01865 0.28 +0.7
373,615 - CSW01_01865 0.41 +0.5
373,625 - CSW01_01865 0.42 +0.0
373,653 + CSW01_01865 0.45 +1.0
373,695 + CSW01_01865 0.49 +0.0
373,742 + CSW01_01865 0.54 -1.3
373,750 - CSW01_01865 0.55 +0.6
373,810 + CSW01_01865 0.61 +0.8
373,810 + CSW01_01865 0.61 +1.2
373,818 - CSW01_01865 0.62 +0.9
373,818 - CSW01_01865 0.62 +1.0
373,831 - CSW01_01865 0.63 -0.1
373,905 - CSW01_01865 0.71 -0.5
373,950 + CSW01_01865 0.75 +1.1
373,958 - CSW01_01865 0.76 +0.7
373,958 - CSW01_01865 0.76 -0.1
373,958 - CSW01_01865 0.76 -0.4
373,958 - CSW01_01865 0.76 +2.0
373,958 - CSW01_01865 0.76 -0.2
373,963 - CSW01_01865 0.76 +0.6
374,029 + CSW01_01865 0.83 +0.3
374,034 + CSW01_01865 0.84 +0.6
374,039 + CSW01_01865 0.84 +0.6
374,042 - CSW01_01865 0.84 +0.8
374,078 + CSW01_01865 0.88 +0.8
374,171 - +0.7
374,221 + -0.1
374,459 + CSW01_01870 0.16 +1.4
374,459 + CSW01_01870 0.16 -0.9
374,467 - CSW01_01870 0.17 +0.4
374,584 + CSW01_01870 0.32 +0.8
374,584 + CSW01_01870 0.32 +0.7
374,592 - CSW01_01870 0.33 +1.0
374,594 + CSW01_01870 0.34 +0.4
374,625 + CSW01_01870 0.38 +2.5
374,633 - CSW01_01870 0.39 -0.2
374,681 + CSW01_01870 0.45 -0.1
374,760 - CSW01_01870 0.55 +0.0
374,792 + CSW01_01870 0.59 +0.6
374,801 - CSW01_01870 0.60 +1.3
374,808 - CSW01_01870 0.61 -0.3
374,826 + CSW01_01870 0.63 +0.5
374,836 - CSW01_01870 0.65 +1.7
374,864 + CSW01_01870 0.68 +0.7
374,895 - CSW01_01870 0.72 +1.7
374,907 + CSW01_01870 0.74 +3.7
374,915 - CSW01_01870 0.75 +0.4
374,952 - CSW01_01870 0.80 +1.7
374,974 + CSW01_01870 0.82 +0.4
375,008 + CSW01_01870 0.87 +0.4
375,008 + CSW01_01870 0.87 +0.2
375,008 + CSW01_01870 0.87 +0.8
375,008 + CSW01_01870 0.87 -0.6
375,008 + CSW01_01870 0.87 -0.4
375,016 - CSW01_01870 0.88 +0.4
375,016 - CSW01_01870 0.88 +0.1
375,016 - CSW01_01870 0.88 +0.4
375,016 - CSW01_01870 0.88 +0.5
375,016 - CSW01_01870 0.88 +1.7
375,016 - CSW01_01870 0.88 +1.0
375,139 + +0.7
375,166 - +1.0
375,167 - +0.7
375,177 - +0.3

Or see this region's nucleotide sequence