Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01530

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_01520 and CSW01_01525 are separated by 202 nucleotidesCSW01_01525 and CSW01_01530 are separated by 8 nucleotidesCSW01_01530 and CSW01_01535 overlap by 46 nucleotidesCSW01_01535 and CSW01_01540 are separated by 98 nucleotides CSW01_01520: CSW01_01520 - acetyl-coenzyme A synthetase, at 303,861 to 305,810 _01520 CSW01_01525: CSW01_01525 - 3'-5' exonuclease, at 306,013 to 306,642 _01525 CSW01_01530: CSW01_01530 - cyclic nucleotide-binding protein, at 306,651 to 308,474 _01530 CSW01_01535: CSW01_01535 - hypothetical protein, at 308,429 to 308,635 _01535 CSW01_01540: CSW01_01540 - 3-phenylpropionate MFS transporter, at 308,734 to 309,924 _01540 Position (kb) 306 307 308 309Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 305.660 kb on + strandat 305.668 kb on - strandat 305.731 kb on - strandat 305.775 kb on - strandat 305.793 kb on + strandat 305.793 kb on + strandat 305.894 kb on + strandat 305.902 kb on - strandat 305.902 kb on - strandat 305.904 kb on + strandat 305.952 kb on - strandat 306.012 kb on - strandat 306.067 kb on + strandat 306.075 kb on - strandat 306.075 kb on - strandat 306.144 kb on + strand, within CSW01_01525at 306.144 kb on + strand, within CSW01_01525at 306.144 kb on + strand, within CSW01_01525at 306.144 kb on + strand, within CSW01_01525at 306.144 kb on + strand, within CSW01_01525at 306.152 kb on - strand, within CSW01_01525at 306.152 kb on - strand, within CSW01_01525at 306.167 kb on + strand, within CSW01_01525at 306.172 kb on + strand, within CSW01_01525at 306.175 kb on - strand, within CSW01_01525at 306.202 kb on + strand, within CSW01_01525at 306.221 kb on - strand, within CSW01_01525at 306.222 kb on + strand, within CSW01_01525at 306.248 kb on + strand, within CSW01_01525at 306.249 kb on + strand, within CSW01_01525at 306.249 kb on + strand, within CSW01_01525at 306.257 kb on - strand, within CSW01_01525at 306.345 kb on - strand, within CSW01_01525at 306.363 kb on - strand, within CSW01_01525at 306.375 kb on - strand, within CSW01_01525at 306.408 kb on - strand, within CSW01_01525at 306.415 kb on - strand, within CSW01_01525at 306.441 kb on + strand, within CSW01_01525at 306.441 kb on + strand, within CSW01_01525at 306.441 kb on + strand, within CSW01_01525at 306.441 kb on + strand, within CSW01_01525at 306.448 kb on + strand, within CSW01_01525at 306.449 kb on - strand, within CSW01_01525at 306.449 kb on - strand, within CSW01_01525at 306.449 kb on - strand, within CSW01_01525at 306.449 kb on - strand, within CSW01_01525at 306.449 kb on - strand, within CSW01_01525at 306.456 kb on - strand, within CSW01_01525at 306.456 kb on - strand, within CSW01_01525at 306.456 kb on - strand, within CSW01_01525at 306.499 kb on + strand, within CSW01_01525at 306.499 kb on + strand, within CSW01_01525at 306.499 kb on + strand, within CSW01_01525at 306.545 kb on + strand, within CSW01_01525at 306.572 kb on + strand, within CSW01_01525at 306.572 kb on + strand, within CSW01_01525at 306.599 kb on + strandat 306.635 kb on - strandat 306.637 kb on + strandat 306.731 kb on + strandat 306.734 kb on - strandat 306.769 kb on + strandat 306.772 kb on - strandat 306.777 kb on - strandat 306.789 kb on - strandat 306.802 kb on - strandat 306.818 kb on + strandat 306.826 kb on - strandat 306.836 kb on + strand, within CSW01_01530at 306.890 kb on + strand, within CSW01_01530at 306.898 kb on + strand, within CSW01_01530at 306.898 kb on - strand, within CSW01_01530at 306.945 kb on + strand, within CSW01_01530at 306.953 kb on - strand, within CSW01_01530at 306.953 kb on - strand, within CSW01_01530at 306.979 kb on - strand, within CSW01_01530at 307.025 kb on - strand, within CSW01_01530at 307.070 kb on + strand, within CSW01_01530at 307.070 kb on + strand, within CSW01_01530at 307.078 kb on - strand, within CSW01_01530at 307.200 kb on - strand, within CSW01_01530at 307.215 kb on - strand, within CSW01_01530at 307.251 kb on - strand, within CSW01_01530at 307.301 kb on + strand, within CSW01_01530at 307.301 kb on + strand, within CSW01_01530at 307.301 kb on + strand, within CSW01_01530at 307.301 kb on + strand, within CSW01_01530at 307.301 kb on + strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.311 kb on - strand, within CSW01_01530at 307.311 kb on - strand, within CSW01_01530at 307.325 kb on - strand, within CSW01_01530at 307.352 kb on - strand, within CSW01_01530at 307.392 kb on - strand, within CSW01_01530at 307.392 kb on - strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.429 kb on + strand, within CSW01_01530at 307.429 kb on + strand, within CSW01_01530at 307.429 kb on + strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.437 kb on - strand, within CSW01_01530at 307.552 kb on - strand, within CSW01_01530at 307.607 kb on - strand, within CSW01_01530at 307.642 kb on - strand, within CSW01_01530at 307.661 kb on + strand, within CSW01_01530at 307.677 kb on + strand, within CSW01_01530at 307.711 kb on - strand, within CSW01_01530at 307.715 kb on - strand, within CSW01_01530at 307.753 kb on - strand, within CSW01_01530at 307.768 kb on + strand, within CSW01_01530at 307.838 kb on + strand, within CSW01_01530at 307.851 kb on - strand, within CSW01_01530at 307.882 kb on + strand, within CSW01_01530at 307.888 kb on + strand, within CSW01_01530at 307.896 kb on - strand, within CSW01_01530at 307.910 kb on + strand, within CSW01_01530at 307.931 kb on - strand, within CSW01_01530at 307.955 kb on + strand, within CSW01_01530at 307.959 kb on + strand, within CSW01_01530at 307.963 kb on - strand, within CSW01_01530at 307.967 kb on + strand, within CSW01_01530at 307.974 kb on + strand, within CSW01_01530at 307.979 kb on + strand, within CSW01_01530at 308.032 kb on + strand, within CSW01_01530at 308.032 kb on + strand, within CSW01_01530at 308.040 kb on - strand, within CSW01_01530at 308.077 kb on + strand, within CSW01_01530at 308.141 kb on + strand, within CSW01_01530at 308.190 kb on - strand, within CSW01_01530at 308.213 kb on - strand, within CSW01_01530at 308.213 kb on - strand, within CSW01_01530at 308.255 kb on - strand, within CSW01_01530at 308.262 kb on + strand, within CSW01_01530at 308.272 kb on + strand, within CSW01_01530at 308.279 kb on + strand, within CSW01_01530at 308.279 kb on + strand, within CSW01_01530at 308.301 kb on - strandat 308.311 kb on - strandat 308.311 kb on - strandat 308.328 kb on + strandat 308.346 kb on - strandat 308.346 kb on - strandat 308.354 kb on - strandat 308.354 kb on - strandat 308.358 kb on + strandat 308.358 kb on + strandat 308.364 kb on - strandat 308.383 kb on - strandat 308.391 kb on + strandat 308.391 kb on + strandat 308.399 kb on - strandat 308.399 kb on - strandat 308.406 kb on + strandat 308.409 kb on - strandat 308.425 kb on + strandat 308.425 kb on + strandat 308.433 kb on - strandat 308.433 kb on - strandat 308.433 kb on - strandat 308.433 kb on - strandat 308.436 kb on + strandat 308.499 kb on + strand, within CSW01_01535at 308.499 kb on + strand, within CSW01_01535at 308.540 kb on + strand, within CSW01_01535at 308.548 kb on - strand, within CSW01_01535at 308.548 kb on - strand, within CSW01_01535at 308.548 kb on - strand, within CSW01_01535at 308.553 kb on - strand, within CSW01_01535at 308.579 kb on + strand, within CSW01_01535at 308.590 kb on - strand, within CSW01_01535at 308.687 kb on + strandat 308.695 kb on - strandat 308.702 kb on + strandat 308.825 kb on + strandat 308.825 kb on + strandat 308.825 kb on + strandat 308.861 kb on - strand, within CSW01_01540at 308.862 kb on - strand, within CSW01_01540at 308.872 kb on + strand, within CSW01_01540at 308.879 kb on + strand, within CSW01_01540at 308.880 kb on - strand, within CSW01_01540at 308.897 kb on - strand, within CSW01_01540at 308.930 kb on + strand, within CSW01_01540at 308.940 kb on + strand, within CSW01_01540at 308.955 kb on + strand, within CSW01_01540at 308.969 kb on - strand, within CSW01_01540at 309.041 kb on - strand, within CSW01_01540at 309.043 kb on - strand, within CSW01_01540at 309.043 kb on - strand, within CSW01_01540at 309.053 kb on - strand, within CSW01_01540at 309.057 kb on + strand, within CSW01_01540at 309.057 kb on - strand, within CSW01_01540at 309.070 kb on - strand, within CSW01_01540at 309.096 kb on + strand, within CSW01_01540at 309.096 kb on + strand, within CSW01_01540at 309.144 kb on - strand, within CSW01_01540at 309.226 kb on + strand, within CSW01_01540at 309.231 kb on + strand, within CSW01_01540at 309.239 kb on - strand, within CSW01_01540at 309.269 kb on + strand, within CSW01_01540at 309.269 kb on + strand, within CSW01_01540at 309.277 kb on - strand, within CSW01_01540at 309.277 kb on - strand, within CSW01_01540at 309.300 kb on + strand, within CSW01_01540at 309.302 kb on - strand, within CSW01_01540at 309.302 kb on - strand, within CSW01_01540at 309.304 kb on + strand, within CSW01_01540at 309.314 kb on + strand, within CSW01_01540at 309.330 kb on + strand, within CSW01_01540at 309.338 kb on - strand, within CSW01_01540at 309.379 kb on + strand, within CSW01_01540at 309.382 kb on - strand, within CSW01_01540at 309.399 kb on + strand, within CSW01_01540at 309.399 kb on + strand, within CSW01_01540at 309.407 kb on - strand, within CSW01_01540at 309.407 kb on - strand, within CSW01_01540at 309.470 kb on + strand, within CSW01_01540at 309.470 kb on + strand, within CSW01_01540at 309.470 kb on + strand, within CSW01_01540at 309.470 kb on + strand, within CSW01_01540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
remove
305,660 + -0.9
305,668 - +1.1
305,731 - +0.4
305,775 - +0.1
305,793 + +0.1
305,793 + +0.1
305,894 + +0.4
305,902 - +0.7
305,902 - -0.9
305,904 + -0.8
305,952 - -0.8
306,012 - +0.2
306,067 + +0.3
306,075 - +1.2
306,075 - +0.5
306,144 + CSW01_01525 0.21 +1.3
306,144 + CSW01_01525 0.21 +0.5
306,144 + CSW01_01525 0.21 +0.3
306,144 + CSW01_01525 0.21 +0.5
306,144 + CSW01_01525 0.21 +0.5
306,152 - CSW01_01525 0.22 +0.8
306,152 - CSW01_01525 0.22 +1.1
306,167 + CSW01_01525 0.24 +0.3
306,172 + CSW01_01525 0.25 +0.3
306,175 - CSW01_01525 0.26 +0.4
306,202 + CSW01_01525 0.30 +0.1
306,221 - CSW01_01525 0.33 -0.0
306,222 + CSW01_01525 0.33 +0.7
306,248 + CSW01_01525 0.37 +0.6
306,249 + CSW01_01525 0.37 +0.5
306,249 + CSW01_01525 0.37 +0.8
306,257 - CSW01_01525 0.39 +0.4
306,345 - CSW01_01525 0.53 +0.8
306,363 - CSW01_01525 0.56 +0.3
306,375 - CSW01_01525 0.57 +0.3
306,408 - CSW01_01525 0.63 +0.0
306,415 - CSW01_01525 0.64 +1.3
306,441 + CSW01_01525 0.68 +0.5
306,441 + CSW01_01525 0.68 +0.8
306,441 + CSW01_01525 0.68 +0.7
306,441 + CSW01_01525 0.68 +2.1
306,448 + CSW01_01525 0.69 -0.9
306,449 - CSW01_01525 0.69 +2.2
306,449 - CSW01_01525 0.69 -1.4
306,449 - CSW01_01525 0.69 +0.0
306,449 - CSW01_01525 0.69 -0.6
306,449 - CSW01_01525 0.69 +0.1
306,456 - CSW01_01525 0.70 +0.5
306,456 - CSW01_01525 0.70 +0.4
306,456 - CSW01_01525 0.70 +0.1
306,499 + CSW01_01525 0.77 +0.2
306,499 + CSW01_01525 0.77 -0.1
306,499 + CSW01_01525 0.77 +0.3
306,545 + CSW01_01525 0.84 -0.2
306,572 + CSW01_01525 0.89 +1.0
306,572 + CSW01_01525 0.89 +1.2
306,599 + +0.2
306,635 - +0.6
306,637 + +0.1
306,731 + +0.0
306,734 - -1.3
306,769 + -1.2
306,772 - -2.0
306,777 - -0.3
306,789 - -3.9
306,802 - -1.8
306,818 + -1.2
306,826 - -1.6
306,836 + CSW01_01530 0.10 -1.7
306,890 + CSW01_01530 0.13 -1.8
306,898 + CSW01_01530 0.14 -2.2
306,898 - CSW01_01530 0.14 +0.5
306,945 + CSW01_01530 0.16 -1.5
306,953 - CSW01_01530 0.17 -0.8
306,953 - CSW01_01530 0.17 -1.3
306,979 - CSW01_01530 0.18 -0.9
307,025 - CSW01_01530 0.21 -0.2
307,070 + CSW01_01530 0.23 -1.6
307,070 + CSW01_01530 0.23 +0.2
307,078 - CSW01_01530 0.23 -0.8
307,200 - CSW01_01530 0.30 -2.0
307,215 - CSW01_01530 0.31 -1.0
307,251 - CSW01_01530 0.33 -0.6
307,301 + CSW01_01530 0.36 -0.8
307,301 + CSW01_01530 0.36 -0.5
307,301 + CSW01_01530 0.36 -0.9
307,301 + CSW01_01530 0.36 -0.2
307,301 + CSW01_01530 0.36 -2.5
307,309 - CSW01_01530 0.36 -0.7
307,309 - CSW01_01530 0.36 -1.2
307,309 - CSW01_01530 0.36 -1.3
307,309 - CSW01_01530 0.36 -1.2
307,309 - CSW01_01530 0.36 -1.8
307,309 - CSW01_01530 0.36 -0.2
307,309 - CSW01_01530 0.36 -0.1
307,309 - CSW01_01530 0.36 -0.5
307,309 - CSW01_01530 0.36 -0.6
307,309 - CSW01_01530 0.36 -1.6
307,311 - CSW01_01530 0.36 +0.2
307,311 - CSW01_01530 0.36 -1.3
307,325 - CSW01_01530 0.37 -0.3
307,352 - CSW01_01530 0.38 -0.3
307,392 - CSW01_01530 0.41 +0.2
307,392 - CSW01_01530 0.41 +0.1
307,424 + CSW01_01530 0.42 -0.1
307,424 + CSW01_01530 0.42 -1.1
307,424 + CSW01_01530 0.42 -1.7
307,424 + CSW01_01530 0.42 -1.3
307,424 + CSW01_01530 0.42 +0.8
307,424 + CSW01_01530 0.42 -2.6
307,424 + CSW01_01530 0.42 -2.0
307,424 + CSW01_01530 0.42 -0.5
307,424 + CSW01_01530 0.42 -1.4
307,429 + CSW01_01530 0.43 -2.8
307,429 + CSW01_01530 0.43 -0.6
307,429 + CSW01_01530 0.43 -1.0
307,432 - CSW01_01530 0.43 -0.4
307,432 - CSW01_01530 0.43 +0.2
307,432 - CSW01_01530 0.43 -1.7
307,432 - CSW01_01530 0.43 -0.2
307,432 - CSW01_01530 0.43 +0.2
307,432 - CSW01_01530 0.43 -0.9
307,432 - CSW01_01530 0.43 -2.5
307,432 - CSW01_01530 0.43 -0.8
307,432 - CSW01_01530 0.43 -0.6
307,437 - CSW01_01530 0.43 -1.6
307,552 - CSW01_01530 0.49 -1.0
307,607 - CSW01_01530 0.52 -0.3
307,642 - CSW01_01530 0.54 -0.2
307,661 + CSW01_01530 0.55 -1.0
307,677 + CSW01_01530 0.56 -1.2
307,711 - CSW01_01530 0.58 -0.2
307,715 - CSW01_01530 0.58 +0.1
307,753 - CSW01_01530 0.60 +0.6
307,768 + CSW01_01530 0.61 +0.1
307,838 + CSW01_01530 0.65 -1.9
307,851 - CSW01_01530 0.66 +0.0
307,882 + CSW01_01530 0.67 +0.6
307,888 + CSW01_01530 0.68 +0.8
307,896 - CSW01_01530 0.68 -0.2
307,910 + CSW01_01530 0.69 -0.9
307,931 - CSW01_01530 0.70 +0.5
307,955 + CSW01_01530 0.71 -1.8
307,959 + CSW01_01530 0.72 -1.2
307,963 - CSW01_01530 0.72 -0.4
307,967 + CSW01_01530 0.72 -2.5
307,974 + CSW01_01530 0.73 -0.4
307,979 + CSW01_01530 0.73 +0.1
308,032 + CSW01_01530 0.76 +0.7
308,032 + CSW01_01530 0.76 +0.9
308,040 - CSW01_01530 0.76 +0.6
308,077 + CSW01_01530 0.78 -1.0
308,141 + CSW01_01530 0.82 +0.4
308,190 - CSW01_01530 0.84 -0.9
308,213 - CSW01_01530 0.86 -0.1
308,213 - CSW01_01530 0.86 -0.4
308,255 - CSW01_01530 0.88 +0.8
308,262 + CSW01_01530 0.88 -0.8
308,272 + CSW01_01530 0.89 -0.2
308,279 + CSW01_01530 0.89 -1.0
308,279 + CSW01_01530 0.89 -0.7
308,301 - +0.2
308,311 - +0.5
308,311 - +0.1
308,328 + -1.8
308,346 - -0.3
308,346 - +0.0
308,354 - +0.8
308,354 - -0.8
308,358 + +0.1
308,358 + +0.2
308,364 - +0.9
308,383 - -0.2
308,391 + -0.9
308,391 + -1.7
308,399 - +0.5
308,399 - +0.8
308,406 + -1.2
308,409 - -0.2
308,425 + +0.7
308,425 + +0.2
308,433 - +1.4
308,433 - +0.3
308,433 - +0.5
308,433 - +0.2
308,436 + -1.5
308,499 + CSW01_01535 0.34 +1.2
308,499 + CSW01_01535 0.34 +0.7
308,540 + CSW01_01535 0.54 -0.6
308,548 - CSW01_01535 0.57 +0.6
308,548 - CSW01_01535 0.57 -1.0
308,548 - CSW01_01535 0.57 -0.4
308,553 - CSW01_01535 0.60 +1.2
308,579 + CSW01_01535 0.72 +0.8
308,590 - CSW01_01535 0.78 -0.4
308,687 + +0.3
308,695 - +0.5
308,702 + +0.1
308,825 + +0.3
308,825 + -0.5
308,825 + +1.8
308,861 - CSW01_01540 0.11 +0.5
308,862 - CSW01_01540 0.11 +0.4
308,872 + CSW01_01540 0.12 +1.2
308,879 + CSW01_01540 0.12 -1.0
308,880 - CSW01_01540 0.12 -0.1
308,897 - CSW01_01540 0.14 +0.9
308,930 + CSW01_01540 0.16 -0.5
308,940 + CSW01_01540 0.17 -0.0
308,955 + CSW01_01540 0.19 +0.5
308,969 - CSW01_01540 0.20 -0.1
309,041 - CSW01_01540 0.26 +0.8
309,043 - CSW01_01540 0.26 +0.0
309,043 - CSW01_01540 0.26 +0.6
309,053 - CSW01_01540 0.27 +1.2
309,057 + CSW01_01540 0.27 +0.3
309,057 - CSW01_01540 0.27 +0.1
309,070 - CSW01_01540 0.28 +0.4
309,096 + CSW01_01540 0.30 -0.2
309,096 + CSW01_01540 0.30 -0.6
309,144 - CSW01_01540 0.34 +1.2
309,226 + CSW01_01540 0.41 +0.0
309,231 + CSW01_01540 0.42 +0.7
309,239 - CSW01_01540 0.42 +0.6
309,269 + CSW01_01540 0.45 -0.8
309,269 + CSW01_01540 0.45 +0.3
309,277 - CSW01_01540 0.46 +1.2
309,277 - CSW01_01540 0.46 +0.7
309,300 + CSW01_01540 0.48 +0.2
309,302 - CSW01_01540 0.48 -0.2
309,302 - CSW01_01540 0.48 +0.5
309,304 + CSW01_01540 0.48 -0.5
309,314 + CSW01_01540 0.49 +0.8
309,330 + CSW01_01540 0.50 +0.4
309,338 - CSW01_01540 0.51 +0.8
309,379 + CSW01_01540 0.54 +0.4
309,382 - CSW01_01540 0.54 +0.3
309,399 + CSW01_01540 0.56 -0.3
309,399 + CSW01_01540 0.56 +0.2
309,407 - CSW01_01540 0.57 +0.2
309,407 - CSW01_01540 0.57 +0.0
309,470 + CSW01_01540 0.62 +0.4
309,470 + CSW01_01540 0.62 -0.5
309,470 + CSW01_01540 0.62 -0.4
309,470 + CSW01_01540 0.62 +0.9

Or see this region's nucleotide sequence