Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01515

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01505 and CSW01_01510 are separated by 14 nucleotidesCSW01_01510 and CSW01_01515 are separated by 56 nucleotidesCSW01_01515 and CSW01_01520 are separated by 379 nucleotides CSW01_01505: CSW01_01505 - acetyl-CoA carboxylase biotin carboxylase subunit, at 301,153 to 302,496 _01505 CSW01_01510: CSW01_01510 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 302,511 to 302,972 _01510 CSW01_01515: CSW01_01515 - type II 3-dehydroquinate dehydratase, at 303,029 to 303,481 _01515 CSW01_01520: CSW01_01520 - acetyl-coenzyme A synthetase, at 303,861 to 305,810 _01520 Position (kb) 303 304Strain fitness (log2 ratio) -2 -1 0 1 2 3at 303.206 kb on - strand, within CSW01_01515at 303.206 kb on - strand, within CSW01_01515at 303.229 kb on - strand, within CSW01_01515at 303.238 kb on - strand, within CSW01_01515at 303.243 kb on - strand, within CSW01_01515at 303.393 kb on - strand, within CSW01_01515at 303.393 kb on - strand, within CSW01_01515at 303.393 kb on - strand, within CSW01_01515at 303.393 kb on - strand, within CSW01_01515at 303.393 kb on - strand, within CSW01_01515at 303.417 kb on - strand, within CSW01_01515at 303.637 kb on - strandat 303.659 kb on + strandat 303.703 kb on + strandat 303.712 kb on + strandat 303.730 kb on - strandat 303.764 kb on - strandat 303.783 kb on - strandat 303.813 kb on + strandat 303.820 kb on - strandat 303.828 kb on + strandat 303.842 kb on + strandat 303.848 kb on + strandat 303.917 kb on + strandat 303.917 kb on + strandat 303.917 kb on + strandat 303.917 kb on + strandat 303.917 kb on + strandat 303.925 kb on - strandat 303.925 kb on - strandat 303.925 kb on - strandat 303.925 kb on - strandat 303.925 kb on - strandat 303.925 kb on - strandat 303.925 kb on - strandat 303.925 kb on - strandat 303.925 kb on - strandat 303.925 kb on - strandat 303.928 kb on + strandat 303.928 kb on + strandat 304.015 kb on + strandat 304.020 kb on + strandat 304.020 kb on + strandat 304.020 kb on + strandat 304.020 kb on + strandat 304.020 kb on + strandat 304.020 kb on + strandat 304.020 kb on + strandat 304.020 kb on + strandat 304.020 kb on + strandat 304.028 kb on - strandat 304.028 kb on - strandat 304.028 kb on - strandat 304.028 kb on - strandat 304.028 kb on - strandat 304.086 kb on - strand, within CSW01_01520at 304.086 kb on - strand, within CSW01_01520at 304.088 kb on + strand, within CSW01_01520at 304.088 kb on + strand, within CSW01_01520at 304.096 kb on + strand, within CSW01_01520at 304.096 kb on - strand, within CSW01_01520at 304.096 kb on - strand, within CSW01_01520at 304.096 kb on - strand, within CSW01_01520at 304.098 kb on + strand, within CSW01_01520at 304.098 kb on + strand, within CSW01_01520at 304.107 kb on - strand, within CSW01_01520at 304.117 kb on + strand, within CSW01_01520at 304.240 kb on + strand, within CSW01_01520at 304.290 kb on - strand, within CSW01_01520at 304.331 kb on - strand, within CSW01_01520at 304.338 kb on - strand, within CSW01_01520at 304.363 kb on - strand, within CSW01_01520at 304.363 kb on - strand, within CSW01_01520at 304.374 kb on + strand, within CSW01_01520at 304.374 kb on + strand, within CSW01_01520at 304.374 kb on + strand, within CSW01_01520at 304.382 kb on - strand, within CSW01_01520at 304.382 kb on - strand, within CSW01_01520at 304.382 kb on - strand, within CSW01_01520at 304.382 kb on - strand, within CSW01_01520at 304.382 kb on - strand, within CSW01_01520at 304.382 kb on - strand, within CSW01_01520at 304.382 kb on - strand, within CSW01_01520at 304.382 kb on - strand, within CSW01_01520at 304.382 kb on - strand, within CSW01_01520at 304.389 kb on + strand, within CSW01_01520at 304.389 kb on + strand, within CSW01_01520at 304.397 kb on - strand, within CSW01_01520at 304.397 kb on - strand, within CSW01_01520at 304.400 kb on + strand, within CSW01_01520at 304.400 kb on + strand, within CSW01_01520at 304.400 kb on + strand, within CSW01_01520at 304.405 kb on + strand, within CSW01_01520at 304.415 kb on + strand, within CSW01_01520at 304.415 kb on - strand, within CSW01_01520at 304.433 kb on - strand, within CSW01_01520at 304.464 kb on + strand, within CSW01_01520

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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303,206 - CSW01_01515 0.39 +2.8
303,206 - CSW01_01515 0.39 -1.3
303,229 - CSW01_01515 0.44 -0.5
303,238 - CSW01_01515 0.46 +0.8
303,243 - CSW01_01515 0.47 -0.6
303,393 - CSW01_01515 0.80 +0.8
303,393 - CSW01_01515 0.80 -1.0
303,393 - CSW01_01515 0.80 -0.8
303,393 - CSW01_01515 0.80 +0.8
303,393 - CSW01_01515 0.80 +0.8
303,417 - CSW01_01515 0.86 -0.8
303,637 - +0.5
303,659 + -0.3
303,703 + -0.7
303,712 + +1.0
303,730 - +0.2
303,764 - +0.1
303,783 - +0.6
303,813 + +0.2
303,820 - -0.1
303,828 + +1.1
303,842 + +0.3
303,848 + +0.1
303,917 + +0.3
303,917 + -0.5
303,917 + +0.2
303,917 + +0.3
303,917 + -0.2
303,925 - -0.0
303,925 - +0.2
303,925 - -0.8
303,925 - -0.1
303,925 - +0.0
303,925 - +0.4
303,925 - +0.1
303,925 - -0.6
303,925 - -0.7
303,925 - +0.4
303,928 + -0.3
303,928 + +0.4
304,015 + +0.3
304,020 + +1.1
304,020 + -0.3
304,020 + +0.7
304,020 + -1.2
304,020 + +0.1
304,020 + +0.8
304,020 + +0.6
304,020 + -0.2
304,020 + -2.3
304,028 - +0.7
304,028 - -0.0
304,028 - +0.5
304,028 - +1.4
304,028 - +0.4
304,086 - CSW01_01520 0.12 +0.2
304,086 - CSW01_01520 0.12 +1.0
304,088 + CSW01_01520 0.12 -0.4
304,088 + CSW01_01520 0.12 +0.9
304,096 + CSW01_01520 0.12 -0.2
304,096 - CSW01_01520 0.12 +0.2
304,096 - CSW01_01520 0.12 +0.5
304,096 - CSW01_01520 0.12 +0.5
304,098 + CSW01_01520 0.12 +0.0
304,098 + CSW01_01520 0.12 -0.2
304,107 - CSW01_01520 0.13 +0.8
304,117 + CSW01_01520 0.13 -2.1
304,240 + CSW01_01520 0.19 -0.1
304,290 - CSW01_01520 0.22 -0.0
304,331 - CSW01_01520 0.24 +1.6
304,338 - CSW01_01520 0.24 +0.2
304,363 - CSW01_01520 0.26 +0.1
304,363 - CSW01_01520 0.26 +1.0
304,374 + CSW01_01520 0.26 +0.4
304,374 + CSW01_01520 0.26 +0.4
304,374 + CSW01_01520 0.26 -0.7
304,382 - CSW01_01520 0.27 +1.8
304,382 - CSW01_01520 0.27 +1.0
304,382 - CSW01_01520 0.27 +0.1
304,382 - CSW01_01520 0.27 +0.8
304,382 - CSW01_01520 0.27 +0.1
304,382 - CSW01_01520 0.27 -0.7
304,382 - CSW01_01520 0.27 +0.8
304,382 - CSW01_01520 0.27 +0.3
304,382 - CSW01_01520 0.27 +0.8
304,389 + CSW01_01520 0.27 -0.7
304,389 + CSW01_01520 0.27 +0.4
304,397 - CSW01_01520 0.27 -0.3
304,397 - CSW01_01520 0.27 -0.1
304,400 + CSW01_01520 0.28 +0.2
304,400 + CSW01_01520 0.28 +1.2
304,400 + CSW01_01520 0.28 +1.3
304,405 + CSW01_01520 0.28 -0.3
304,415 + CSW01_01520 0.28 +0.7
304,415 - CSW01_01520 0.28 +0.2
304,433 - CSW01_01520 0.29 +0.5
304,464 + CSW01_01520 0.31 -0.7

Or see this region's nucleotide sequence