Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01185

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01175 and CSW01_01180 are separated by 96 nucleotidesCSW01_01180 and CSW01_01185 are separated by 110 nucleotidesCSW01_01185 and CSW01_01190 are separated by 61 nucleotidesCSW01_01190 and CSW01_01195 are separated by 42 nucleotides CSW01_01175: CSW01_01175 - formamidopyrimidine-DNA glycosylase, at 227,366 to 228,175 _01175 CSW01_01180: CSW01_01180 - phosphopantetheine adenylyltransferase, at 228,272 to 228,766 _01180 CSW01_01185: CSW01_01185 - ADP-heptose--LPS heptosyltransferase, at 228,877 to 229,914 _01185 CSW01_01190: CSW01_01190 - glycosyltransferase family 2 protein, at 229,976 to 230,755 _01190 CSW01_01195: CSW01_01195 - ADP-heptose--LPS heptosyltransferase I, at 230,798 to 231,871 _01195 Position (kb) 228 229 230Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 227.901 kb on - strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.955 kb on + strand, within CSW01_01175at 227.955 kb on + strand, within CSW01_01175at 227.963 kb on - strand, within CSW01_01175at 227.963 kb on - strand, within CSW01_01175at 228.002 kb on + strand, within CSW01_01175at 228.006 kb on + strand, within CSW01_01175at 228.071 kb on + strand, within CSW01_01175at 228.079 kb on - strand, within CSW01_01175at 228.079 kb on - strand, within CSW01_01175at 228.079 kb on - strand, within CSW01_01175at 228.091 kb on + strand, within CSW01_01175at 228.099 kb on - strandat 228.099 kb on - strandat 228.099 kb on - strandat 228.137 kb on - strandat 228.147 kb on - strandat 228.196 kb on - strandat 228.220 kb on + strandat 228.228 kb on - strandat 228.236 kb on + strandat 228.244 kb on - strandat 228.261 kb on + strandat 228.261 kb on + strandat 228.269 kb on - strandat 228.826 kb on - strandat 228.948 kb on + strandat 228.956 kb on - strandat 229.015 kb on + strand, within CSW01_01185at 229.025 kb on - strand, within CSW01_01185at 229.049 kb on + strand, within CSW01_01185at 229.057 kb on - strand, within CSW01_01185at 229.085 kb on - strand, within CSW01_01185at 229.089 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.142 kb on - strand, within CSW01_01185at 229.144 kb on + strand, within CSW01_01185at 229.152 kb on - strand, within CSW01_01185at 229.164 kb on - strand, within CSW01_01185at 229.227 kb on + strand, within CSW01_01185at 229.240 kb on - strand, within CSW01_01185at 229.345 kb on + strand, within CSW01_01185at 229.352 kb on - strand, within CSW01_01185at 229.363 kb on + strand, within CSW01_01185at 229.401 kb on + strand, within CSW01_01185at 229.423 kb on + strand, within CSW01_01185at 229.472 kb on + strand, within CSW01_01185at 229.472 kb on + strand, within CSW01_01185at 229.480 kb on - strand, within CSW01_01185at 229.480 kb on - strand, within CSW01_01185at 229.484 kb on + strand, within CSW01_01185at 229.494 kb on + strand, within CSW01_01185at 229.528 kb on - strand, within CSW01_01185at 229.535 kb on + strand, within CSW01_01185at 229.653 kb on + strand, within CSW01_01185at 229.665 kb on + strand, within CSW01_01185at 229.741 kb on + strand, within CSW01_01185at 229.774 kb on + strand, within CSW01_01185at 229.832 kb on - strandat 229.858 kb on + strandat 229.886 kb on + strandat 229.893 kb on + strandat 229.908 kb on + strandat 229.908 kb on + strandat 229.967 kb on + strandat 229.983 kb on + strandat 230.007 kb on + strandat 230.009 kb on + strandat 230.033 kb on + strandat 230.033 kb on + strandat 230.033 kb on + strandat 230.038 kb on + strandat 230.041 kb on - strandat 230.043 kb on + strandat 230.051 kb on - strandat 230.051 kb on - strandat 230.051 kb on - strandat 230.051 kb on - strandat 230.051 kb on - strandat 230.051 kb on - strandat 230.131 kb on + strand, within CSW01_01190at 230.146 kb on - strand, within CSW01_01190at 230.156 kb on - strand, within CSW01_01190at 230.222 kb on + strand, within CSW01_01190at 230.234 kb on + strand, within CSW01_01190at 230.269 kb on - strand, within CSW01_01190at 230.330 kb on + strand, within CSW01_01190at 230.414 kb on - strand, within CSW01_01190at 230.426 kb on + strand, within CSW01_01190at 230.568 kb on - strand, within CSW01_01190at 230.601 kb on + strand, within CSW01_01190at 230.601 kb on + strand, within CSW01_01190at 230.609 kb on - strand, within CSW01_01190at 230.657 kb on + strand, within CSW01_01190at 230.670 kb on - strand, within CSW01_01190at 230.680 kb on - strandat 230.680 kb on - strandat 230.825 kb on - strandat 230.829 kb on + strandat 230.868 kb on + strandat 230.868 kb on + strandat 230.876 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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227,901 - CSW01_01175 0.66 -0.4
227,937 + CSW01_01175 0.70 -0.4
227,937 + CSW01_01175 0.70 -0.5
227,937 + CSW01_01175 0.70 +0.2
227,937 + CSW01_01175 0.70 -0.2
227,937 + CSW01_01175 0.70 -0.0
227,937 + CSW01_01175 0.70 +1.1
227,937 + CSW01_01175 0.70 -0.4
227,937 + CSW01_01175 0.70 +2.1
227,937 + CSW01_01175 0.70 -0.8
227,937 + CSW01_01175 0.70 -0.4
227,937 + CSW01_01175 0.70 -0.7
227,937 + CSW01_01175 0.70 +0.5
227,937 + CSW01_01175 0.70 -1.8
227,937 + CSW01_01175 0.70 -0.0
227,937 + CSW01_01175 0.70 -0.3
227,937 + CSW01_01175 0.70 +0.4
227,937 + CSW01_01175 0.70 +1.2
227,937 + CSW01_01175 0.70 -0.5
227,937 + CSW01_01175 0.70 +0.0
227,937 + CSW01_01175 0.70 +0.4
227,945 - CSW01_01175 0.71 +0.4
227,945 - CSW01_01175 0.71 +0.0
227,945 - CSW01_01175 0.71 +0.6
227,945 - CSW01_01175 0.71 +0.9
227,945 - CSW01_01175 0.71 +1.3
227,945 - CSW01_01175 0.71 +0.4
227,945 - CSW01_01175 0.71 -0.1
227,945 - CSW01_01175 0.71 +0.9
227,945 - CSW01_01175 0.71 +0.1
227,945 - CSW01_01175 0.71 +0.5
227,945 - CSW01_01175 0.71 -1.5
227,945 - CSW01_01175 0.71 -0.2
227,945 - CSW01_01175 0.71 -0.4
227,945 - CSW01_01175 0.71 +0.6
227,945 - CSW01_01175 0.71 +0.3
227,945 - CSW01_01175 0.71 +0.3
227,945 - CSW01_01175 0.71 -0.2
227,945 - CSW01_01175 0.71 +0.7
227,945 - CSW01_01175 0.71 +0.4
227,945 - CSW01_01175 0.71 +0.0
227,945 - CSW01_01175 0.71 -2.0
227,945 - CSW01_01175 0.71 +1.2
227,945 - CSW01_01175 0.71 -1.7
227,955 + CSW01_01175 0.73 +0.5
227,955 + CSW01_01175 0.73 +0.0
227,963 - CSW01_01175 0.74 +0.3
227,963 - CSW01_01175 0.74 +0.6
228,002 + CSW01_01175 0.79 -0.1
228,006 + CSW01_01175 0.79 +0.1
228,071 + CSW01_01175 0.87 +0.3
228,079 - CSW01_01175 0.88 +0.2
228,079 - CSW01_01175 0.88 +0.2
228,079 - CSW01_01175 0.88 +0.1
228,091 + CSW01_01175 0.90 -0.5
228,099 - +0.1
228,099 - -0.1
228,099 - +0.2
228,137 - +0.1
228,147 - -0.1
228,196 - -0.6
228,220 + +0.9
228,228 - +0.7
228,236 + -1.1
228,244 - +0.4
228,261 + +0.0
228,261 + +0.7
228,269 - -0.3
228,826 - -0.9
228,948 + -0.9
228,956 - -2.5
229,015 + CSW01_01185 0.13 -1.6
229,025 - CSW01_01185 0.14 -0.5
229,049 + CSW01_01185 0.17 +1.2
229,057 - CSW01_01185 0.17 -1.1
229,085 - CSW01_01185 0.20 +1.5
229,089 + CSW01_01185 0.20 +1.5
229,134 + CSW01_01185 0.25 -0.5
229,134 + CSW01_01185 0.25 -3.5
229,134 + CSW01_01185 0.25 +0.9
229,142 - CSW01_01185 0.26 -0.3
229,144 + CSW01_01185 0.26 -1.1
229,152 - CSW01_01185 0.26 -0.0
229,164 - CSW01_01185 0.28 -0.8
229,227 + CSW01_01185 0.34 +0.5
229,240 - CSW01_01185 0.35 -0.2
229,345 + CSW01_01185 0.45 +0.9
229,352 - CSW01_01185 0.46 -0.1
229,363 + CSW01_01185 0.47 +0.6
229,401 + CSW01_01185 0.50 +0.9
229,423 + CSW01_01185 0.53 +0.1
229,472 + CSW01_01185 0.57 -0.5
229,472 + CSW01_01185 0.57 -0.1
229,480 - CSW01_01185 0.58 +0.1
229,480 - CSW01_01185 0.58 -0.9
229,484 + CSW01_01185 0.58 -0.5
229,494 + CSW01_01185 0.59 +0.6
229,528 - CSW01_01185 0.63 -3.1
229,535 + CSW01_01185 0.63 +0.6
229,653 + CSW01_01185 0.75 -1.2
229,665 + CSW01_01185 0.76 -0.2
229,741 + CSW01_01185 0.83 -1.7
229,774 + CSW01_01185 0.86 -0.9
229,832 - -0.3
229,858 + -0.1
229,886 + +0.3
229,893 + -0.8
229,908 + -0.1
229,908 + +0.1
229,967 + +0.1
229,983 + +0.1
230,007 + -0.9
230,009 + -0.1
230,033 + -0.1
230,033 + -1.5
230,033 + -1.2
230,038 + -0.9
230,041 - -0.4
230,043 + -0.9
230,051 - -0.3
230,051 - +0.2
230,051 - -0.4
230,051 - +0.2
230,051 - -0.3
230,051 - -0.1
230,131 + CSW01_01190 0.20 +2.2
230,146 - CSW01_01190 0.22 -0.3
230,156 - CSW01_01190 0.23 -0.6
230,222 + CSW01_01190 0.32 -0.2
230,234 + CSW01_01190 0.33 -1.6
230,269 - CSW01_01190 0.38 -0.1
230,330 + CSW01_01190 0.45 -1.0
230,414 - CSW01_01190 0.56 +0.3
230,426 + CSW01_01190 0.58 -0.3
230,568 - CSW01_01190 0.76 +0.6
230,601 + CSW01_01190 0.80 -1.0
230,601 + CSW01_01190 0.80 -1.5
230,609 - CSW01_01190 0.81 -0.2
230,657 + CSW01_01190 0.87 -0.9
230,670 - CSW01_01190 0.89 -0.0
230,680 - -2.0
230,680 - -0.6
230,825 - -0.4
230,829 + +0.5
230,868 + -2.1
230,868 + -0.1
230,876 - +0.9

Or see this region's nucleotide sequence