Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01175

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01160 and CSW01_01165 are separated by 13 nucleotidesCSW01_01165 and CSW01_01170 are separated by 220 nucleotidesCSW01_01170 and CSW01_01175 are separated by 9 nucleotidesCSW01_01175 and CSW01_01180 are separated by 96 nucleotidesCSW01_01180 and CSW01_01185 are separated by 110 nucleotides CSW01_01160: CSW01_01160 - 50S ribosomal protein L28, at 226,230 to 226,466 _01160 CSW01_01165: CSW01_01165 - 50S ribosomal protein L33, at 226,480 to 226,647 _01165 CSW01_01170: CSW01_01170 - hypothetical protein, at 226,868 to 227,356 _01170 CSW01_01175: CSW01_01175 - formamidopyrimidine-DNA glycosylase, at 227,366 to 228,175 _01175 CSW01_01180: CSW01_01180 - phosphopantetheine adenylyltransferase, at 228,272 to 228,766 _01180 CSW01_01185: CSW01_01185 - ADP-heptose--LPS heptosyltransferase, at 228,877 to 229,914 _01185 Position (kb) 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 226.536 kb on + strand, within CSW01_01165at 226.745 kb on + strandat 226.745 kb on + strandat 226.752 kb on + strandat 226.752 kb on + strandat 226.752 kb on + strandat 226.753 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.857 kb on - strandat 226.900 kb on + strandat 227.014 kb on + strand, within CSW01_01170at 227.022 kb on - strand, within CSW01_01170at 227.039 kb on - strand, within CSW01_01170at 227.052 kb on - strand, within CSW01_01170at 227.081 kb on + strand, within CSW01_01170at 227.129 kb on - strand, within CSW01_01170at 227.136 kb on + strand, within CSW01_01170at 227.144 kb on - strand, within CSW01_01170at 227.159 kb on - strand, within CSW01_01170at 227.169 kb on - strand, within CSW01_01170at 227.258 kb on - strand, within CSW01_01170at 227.264 kb on - strand, within CSW01_01170at 227.341 kb on - strandat 227.397 kb on + strandat 227.417 kb on - strandat 227.432 kb on + strandat 227.432 kb on + strandat 227.440 kb on - strandat 227.452 kb on - strand, within CSW01_01175at 227.459 kb on + strand, within CSW01_01175at 227.469 kb on + strand, within CSW01_01175at 227.477 kb on - strand, within CSW01_01175at 227.477 kb on - strand, within CSW01_01175at 227.477 kb on - strand, within CSW01_01175at 227.484 kb on + strand, within CSW01_01175at 227.492 kb on - strand, within CSW01_01175at 227.563 kb on - strand, within CSW01_01175at 227.650 kb on + strand, within CSW01_01175at 227.705 kb on + strand, within CSW01_01175at 227.705 kb on + strand, within CSW01_01175at 227.707 kb on + strand, within CSW01_01175at 227.707 kb on + strand, within CSW01_01175at 227.707 kb on + strand, within CSW01_01175at 227.713 kb on - strand, within CSW01_01175at 227.715 kb on - strand, within CSW01_01175at 227.715 kb on - strand, within CSW01_01175at 227.715 kb on - strand, within CSW01_01175at 227.715 kb on - strand, within CSW01_01175at 227.723 kb on + strand, within CSW01_01175at 227.728 kb on - strand, within CSW01_01175at 227.730 kb on + strand, within CSW01_01175at 227.731 kb on - strand, within CSW01_01175at 227.740 kb on + strand, within CSW01_01175at 227.748 kb on - strand, within CSW01_01175at 227.754 kb on + strand, within CSW01_01175at 227.817 kb on - strand, within CSW01_01175at 227.824 kb on + strand, within CSW01_01175at 227.855 kb on - strand, within CSW01_01175at 227.855 kb on - strand, within CSW01_01175at 227.901 kb on - strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.955 kb on + strand, within CSW01_01175at 227.955 kb on + strand, within CSW01_01175at 227.963 kb on - strand, within CSW01_01175at 227.963 kb on - strand, within CSW01_01175at 228.002 kb on + strand, within CSW01_01175at 228.006 kb on + strand, within CSW01_01175at 228.071 kb on + strand, within CSW01_01175at 228.079 kb on - strand, within CSW01_01175at 228.079 kb on - strand, within CSW01_01175at 228.079 kb on - strand, within CSW01_01175at 228.091 kb on + strand, within CSW01_01175at 228.099 kb on - strandat 228.099 kb on - strandat 228.099 kb on - strandat 228.137 kb on - strandat 228.147 kb on - strandat 228.196 kb on - strandat 228.220 kb on + strandat 228.228 kb on - strandat 228.236 kb on + strandat 228.244 kb on - strandat 228.261 kb on + strandat 228.261 kb on + strandat 228.269 kb on - strandat 228.826 kb on - strandat 228.948 kb on + strandat 228.956 kb on - strandat 229.015 kb on + strand, within CSW01_01185at 229.025 kb on - strand, within CSW01_01185at 229.049 kb on + strand, within CSW01_01185at 229.057 kb on - strand, within CSW01_01185at 229.085 kb on - strand, within CSW01_01185at 229.089 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.142 kb on - strand, within CSW01_01185at 229.144 kb on + strand, within CSW01_01185at 229.152 kb on - strand, within CSW01_01185at 229.164 kb on - strand, within CSW01_01185

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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226,536 + CSW01_01165 0.33 -1.9
226,745 + -0.8
226,745 + -0.6
226,752 + -1.9
226,752 + +1.5
226,752 + +1.3
226,753 - +0.7
226,760 - +0.5
226,760 - +0.4
226,760 - +0.0
226,760 - +0.1
226,760 - +0.8
226,857 - +0.3
226,900 + +0.2
227,014 + CSW01_01170 0.30 +0.9
227,022 - CSW01_01170 0.31 +0.6
227,039 - CSW01_01170 0.35 +0.8
227,052 - CSW01_01170 0.38 +0.6
227,081 + CSW01_01170 0.44 -0.3
227,129 - CSW01_01170 0.53 +0.3
227,136 + CSW01_01170 0.55 -0.2
227,144 - CSW01_01170 0.56 +0.4
227,159 - CSW01_01170 0.60 -0.4
227,169 - CSW01_01170 0.62 +0.2
227,258 - CSW01_01170 0.80 -0.6
227,264 - CSW01_01170 0.81 +0.8
227,341 - +0.8
227,397 + +0.1
227,417 - +1.6
227,432 + +0.0
227,432 + +0.2
227,440 - -0.7
227,452 - CSW01_01175 0.11 +1.9
227,459 + CSW01_01175 0.11 +0.9
227,469 + CSW01_01175 0.13 -1.0
227,477 - CSW01_01175 0.14 -0.4
227,477 - CSW01_01175 0.14 -0.3
227,477 - CSW01_01175 0.14 +1.2
227,484 + CSW01_01175 0.15 -1.1
227,492 - CSW01_01175 0.16 +0.1
227,563 - CSW01_01175 0.24 +0.3
227,650 + CSW01_01175 0.35 -0.1
227,705 + CSW01_01175 0.42 -1.7
227,705 + CSW01_01175 0.42 +0.0
227,707 + CSW01_01175 0.42 -0.1
227,707 + CSW01_01175 0.42 +0.7
227,707 + CSW01_01175 0.42 +0.2
227,713 - CSW01_01175 0.43 -0.5
227,715 - CSW01_01175 0.43 +0.5
227,715 - CSW01_01175 0.43 +0.3
227,715 - CSW01_01175 0.43 +0.3
227,715 - CSW01_01175 0.43 +0.1
227,723 + CSW01_01175 0.44 +0.5
227,728 - CSW01_01175 0.45 -0.0
227,730 + CSW01_01175 0.45 +0.1
227,731 - CSW01_01175 0.45 +1.6
227,740 + CSW01_01175 0.46 +0.5
227,748 - CSW01_01175 0.47 +0.2
227,754 + CSW01_01175 0.48 -0.2
227,817 - CSW01_01175 0.56 -0.4
227,824 + CSW01_01175 0.57 +0.1
227,855 - CSW01_01175 0.60 +0.0
227,855 - CSW01_01175 0.60 -1.2
227,901 - CSW01_01175 0.66 -0.4
227,937 + CSW01_01175 0.70 -0.4
227,937 + CSW01_01175 0.70 -0.5
227,937 + CSW01_01175 0.70 +0.2
227,937 + CSW01_01175 0.70 -0.2
227,937 + CSW01_01175 0.70 -0.0
227,937 + CSW01_01175 0.70 +1.1
227,937 + CSW01_01175 0.70 -0.4
227,937 + CSW01_01175 0.70 +2.1
227,937 + CSW01_01175 0.70 -0.8
227,937 + CSW01_01175 0.70 -0.4
227,937 + CSW01_01175 0.70 -0.7
227,937 + CSW01_01175 0.70 +0.5
227,937 + CSW01_01175 0.70 -1.8
227,937 + CSW01_01175 0.70 -0.0
227,937 + CSW01_01175 0.70 -0.3
227,937 + CSW01_01175 0.70 +0.4
227,937 + CSW01_01175 0.70 +1.2
227,937 + CSW01_01175 0.70 -0.5
227,937 + CSW01_01175 0.70 +0.0
227,937 + CSW01_01175 0.70 +0.4
227,945 - CSW01_01175 0.71 +0.4
227,945 - CSW01_01175 0.71 +0.0
227,945 - CSW01_01175 0.71 +0.6
227,945 - CSW01_01175 0.71 +0.9
227,945 - CSW01_01175 0.71 +1.3
227,945 - CSW01_01175 0.71 +0.4
227,945 - CSW01_01175 0.71 -0.1
227,945 - CSW01_01175 0.71 +0.9
227,945 - CSW01_01175 0.71 +0.1
227,945 - CSW01_01175 0.71 +0.5
227,945 - CSW01_01175 0.71 -1.5
227,945 - CSW01_01175 0.71 -0.2
227,945 - CSW01_01175 0.71 -0.4
227,945 - CSW01_01175 0.71 +0.6
227,945 - CSW01_01175 0.71 +0.3
227,945 - CSW01_01175 0.71 +0.3
227,945 - CSW01_01175 0.71 -0.2
227,945 - CSW01_01175 0.71 +0.7
227,945 - CSW01_01175 0.71 +0.4
227,945 - CSW01_01175 0.71 +0.0
227,945 - CSW01_01175 0.71 -2.0
227,945 - CSW01_01175 0.71 +1.2
227,945 - CSW01_01175 0.71 -1.7
227,955 + CSW01_01175 0.73 +0.5
227,955 + CSW01_01175 0.73 +0.0
227,963 - CSW01_01175 0.74 +0.3
227,963 - CSW01_01175 0.74 +0.6
228,002 + CSW01_01175 0.79 -0.1
228,006 + CSW01_01175 0.79 +0.1
228,071 + CSW01_01175 0.87 +0.3
228,079 - CSW01_01175 0.88 +0.2
228,079 - CSW01_01175 0.88 +0.2
228,079 - CSW01_01175 0.88 +0.1
228,091 + CSW01_01175 0.90 -0.5
228,099 - +0.1
228,099 - -0.1
228,099 - +0.2
228,137 - +0.1
228,147 - -0.1
228,196 - -0.6
228,220 + +0.9
228,228 - +0.7
228,236 + -1.1
228,244 - +0.4
228,261 + +0.0
228,261 + +0.7
228,269 - -0.3
228,826 - -0.9
228,948 + -0.9
228,956 - -2.5
229,015 + CSW01_01185 0.13 -1.6
229,025 - CSW01_01185 0.14 -0.5
229,049 + CSW01_01185 0.17 +1.2
229,057 - CSW01_01185 0.17 -1.1
229,085 - CSW01_01185 0.20 +1.5
229,089 + CSW01_01185 0.20 +1.5
229,134 + CSW01_01185 0.25 -0.5
229,134 + CSW01_01185 0.25 -3.5
229,134 + CSW01_01185 0.25 +0.9
229,142 - CSW01_01185 0.26 -0.3
229,144 + CSW01_01185 0.26 -1.1
229,152 - CSW01_01185 0.26 -0.0
229,164 - CSW01_01185 0.28 -0.8

Or see this region's nucleotide sequence