Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01050

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_01045 and CSW01_01050 overlap by 8 nucleotidesCSW01_01050 and CSW01_01055 are separated by 155 nucleotidesCSW01_01055 and CSW01_01060 are separated by 35 nucleotides CSW01_01045: CSW01_01045 - DNA helicase RecQ, at 201,831 to 203,666 _01045 CSW01_01050: CSW01_01050 - DUF3630 domain-containing protein, at 203,659 to 203,958 _01050 CSW01_01055: CSW01_01055 - hypothetical protein, at 204,114 to 204,491 _01055 CSW01_01060: CSW01_01060 - ABC transporter ATP-binding protein, at 204,527 to 206,362 _01060 Position (kb) 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 202.663 kb on + strand, within CSW01_01045at 202.686 kb on - strand, within CSW01_01045at 202.752 kb on - strand, within CSW01_01045at 202.786 kb on + strand, within CSW01_01045at 202.821 kb on + strand, within CSW01_01045at 202.829 kb on - strand, within CSW01_01045at 202.831 kb on - strand, within CSW01_01045at 202.854 kb on - strand, within CSW01_01045at 202.856 kb on + strand, within CSW01_01045at 202.864 kb on - strand, within CSW01_01045at 202.885 kb on + strand, within CSW01_01045at 202.904 kb on + strand, within CSW01_01045at 202.912 kb on - strand, within CSW01_01045at 202.912 kb on - strand, within CSW01_01045at 203.024 kb on + strand, within CSW01_01045at 203.057 kb on + strand, within CSW01_01045at 203.082 kb on - strand, within CSW01_01045at 203.102 kb on - strand, within CSW01_01045at 203.145 kb on + strand, within CSW01_01045at 203.159 kb on - strand, within CSW01_01045at 203.161 kb on - strand, within CSW01_01045at 203.209 kb on + strand, within CSW01_01045at 203.285 kb on - strand, within CSW01_01045at 203.285 kb on - strand, within CSW01_01045at 203.308 kb on - strand, within CSW01_01045at 203.345 kb on - strand, within CSW01_01045at 203.379 kb on + strand, within CSW01_01045at 203.459 kb on + strand, within CSW01_01045at 203.476 kb on - strand, within CSW01_01045at 203.493 kb on + strandat 203.534 kb on - strandat 203.558 kb on - strandat 203.582 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.590 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.667 kb on + strandat 203.758 kb on + strand, within CSW01_01050at 203.804 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.819 kb on - strand, within CSW01_01050at 203.819 kb on - strand, within CSW01_01050at 203.894 kb on + strand, within CSW01_01050at 203.900 kb on + strand, within CSW01_01050at 203.900 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.913 kb on - strand, within CSW01_01050at 203.913 kb on - strand, within CSW01_01050at 203.952 kb on + strandat 203.973 kb on + strandat 203.976 kb on - strandat 203.976 kb on - strandat 204.001 kb on - strandat 204.033 kb on + strandat 204.041 kb on + strandat 204.041 kb on - strandat 204.041 kb on - strandat 204.081 kb on + strandat 204.087 kb on - strandat 204.104 kb on + strandat 204.132 kb on + strandat 204.216 kb on + strand, within CSW01_01055at 204.228 kb on + strand, within CSW01_01055at 204.233 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.298 kb on - strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.334 kb on - strand, within CSW01_01055at 204.360 kb on + strand, within CSW01_01055at 204.360 kb on + strand, within CSW01_01055at 204.368 kb on - strand, within CSW01_01055at 204.368 kb on - strand, within CSW01_01055at 204.381 kb on + strand, within CSW01_01055at 204.447 kb on - strand, within CSW01_01055at 204.463 kb on - strandat 204.472 kb on + strandat 204.507 kb on + strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.559 kb on - strandat 204.561 kb on + strandat 204.569 kb on - strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.607 kb on - strandat 204.748 kb on + strand, within CSW01_01060at 204.778 kb on - strand, within CSW01_01060at 204.788 kb on - strand, within CSW01_01060at 204.790 kb on - strand, within CSW01_01060at 204.827 kb on + strand, within CSW01_01060at 204.827 kb on + strand, within CSW01_01060at 204.827 kb on + strand, within CSW01_01060at 204.828 kb on - strand, within CSW01_01060at 204.835 kb on - strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.858 kb on - strand, within CSW01_01060at 204.858 kb on - strand, within CSW01_01060at 204.858 kb on - strand, within CSW01_01060at 204.877 kb on + strand, within CSW01_01060at 204.878 kb on + strand, within CSW01_01060at 204.878 kb on + strand, within CSW01_01060at 204.878 kb on + strand, within CSW01_01060at 204.886 kb on - strand, within CSW01_01060at 204.886 kb on - strand, within CSW01_01060at 204.886 kb on - strand, within CSW01_01060at 204.893 kb on + strand, within CSW01_01060at 204.901 kb on - strand, within CSW01_01060at 204.935 kb on + strand, within CSW01_01060

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
remove
202,663 + CSW01_01045 0.45 +0.5
202,686 - CSW01_01045 0.47 -0.2
202,752 - CSW01_01045 0.50 -0.6
202,786 + CSW01_01045 0.52 -0.3
202,821 + CSW01_01045 0.54 -0.3
202,829 - CSW01_01045 0.54 -0.5
202,831 - CSW01_01045 0.54 -0.6
202,854 - CSW01_01045 0.56 -1.9
202,856 + CSW01_01045 0.56 -0.5
202,864 - CSW01_01045 0.56 -2.1
202,885 + CSW01_01045 0.57 -0.8
202,904 + CSW01_01045 0.58 +0.0
202,912 - CSW01_01045 0.59 -0.1
202,912 - CSW01_01045 0.59 -0.8
203,024 + CSW01_01045 0.65 -0.6
203,057 + CSW01_01045 0.67 -0.4
203,082 - CSW01_01045 0.68 -0.8
203,102 - CSW01_01045 0.69 -0.1
203,145 + CSW01_01045 0.72 +0.2
203,159 - CSW01_01045 0.72 -1.3
203,161 - CSW01_01045 0.72 +0.3
203,209 + CSW01_01045 0.75 -1.2
203,285 - CSW01_01045 0.79 -0.4
203,285 - CSW01_01045 0.79 -1.9
203,308 - CSW01_01045 0.80 -0.3
203,345 - CSW01_01045 0.82 -0.5
203,379 + CSW01_01045 0.84 -0.3
203,459 + CSW01_01045 0.89 -0.3
203,476 - CSW01_01045 0.90 +0.2
203,493 + -0.8
203,534 - -0.3
203,558 - +1.7
203,582 + -0.4
203,587 + +0.6
203,587 + -0.0
203,587 + +0.5
203,587 + -0.0
203,587 + -2.1
203,587 + +0.2
203,587 + -0.9
203,587 + -0.3
203,590 - -0.4
203,595 - -0.5
203,595 - -0.6
203,595 - +0.0
203,595 - -0.9
203,595 - -0.5
203,667 + +0.1
203,758 + CSW01_01050 0.33 -0.2
203,804 + CSW01_01050 0.48 -0.1
203,809 + CSW01_01050 0.50 -0.1
203,809 + CSW01_01050 0.50 +0.2
203,809 + CSW01_01050 0.50 -0.0
203,817 - CSW01_01050 0.53 +0.1
203,817 - CSW01_01050 0.53 +0.8
203,817 - CSW01_01050 0.53 -0.6
203,817 - CSW01_01050 0.53 -0.5
203,817 - CSW01_01050 0.53 +0.3
203,817 - CSW01_01050 0.53 -0.5
203,819 - CSW01_01050 0.53 +0.4
203,819 - CSW01_01050 0.53 +0.1
203,894 + CSW01_01050 0.78 -0.6
203,900 + CSW01_01050 0.80 +0.2
203,900 + CSW01_01050 0.80 +0.4
203,905 + CSW01_01050 0.82 +0.4
203,905 + CSW01_01050 0.82 +0.3
203,905 + CSW01_01050 0.82 +0.0
203,905 + CSW01_01050 0.82 -0.1
203,905 + CSW01_01050 0.82 +0.6
203,913 - CSW01_01050 0.85 -0.2
203,913 - CSW01_01050 0.85 -1.2
203,952 + +3.2
203,973 + -0.7
203,976 - -0.1
203,976 - +0.2
204,001 - +0.0
204,033 + +0.0
204,041 + +0.4
204,041 - +0.4
204,041 - +0.6
204,081 + +0.5
204,087 - -0.2
204,104 + -0.1
204,132 + +1.1
204,216 + CSW01_01055 0.27 -0.4
204,228 + CSW01_01055 0.30 +0.9
204,233 + CSW01_01055 0.31 -0.1
204,279 + CSW01_01055 0.44 -0.1
204,279 + CSW01_01055 0.44 -1.3
204,279 + CSW01_01055 0.44 +1.6
204,279 + CSW01_01055 0.44 -0.5
204,298 - CSW01_01055 0.49 -0.6
204,316 + CSW01_01055 0.53 -0.2
204,316 + CSW01_01055 0.53 +0.5
204,316 + CSW01_01055 0.53 -0.1
204,316 + CSW01_01055 0.53 +0.5
204,316 + CSW01_01055 0.53 +0.6
204,316 + CSW01_01055 0.53 -0.4
204,316 + CSW01_01055 0.53 -0.2
204,316 + CSW01_01055 0.53 -0.0
204,316 + CSW01_01055 0.53 -0.2
204,316 + CSW01_01055 0.53 -1.2
204,316 + CSW01_01055 0.53 -0.1
204,316 + CSW01_01055 0.53 -1.0
204,324 - CSW01_01055 0.56 -0.4
204,324 - CSW01_01055 0.56 +0.5
204,324 - CSW01_01055 0.56 +0.6
204,324 - CSW01_01055 0.56 +1.2
204,324 - CSW01_01055 0.56 -0.2
204,324 - CSW01_01055 0.56 -0.3
204,324 - CSW01_01055 0.56 -2.8
204,324 - CSW01_01055 0.56 +0.2
204,324 - CSW01_01055 0.56 +0.7
204,324 - CSW01_01055 0.56 +0.2
204,324 - CSW01_01055 0.56 -0.2
204,326 + CSW01_01055 0.56 +0.1
204,326 + CSW01_01055 0.56 -0.3
204,326 + CSW01_01055 0.56 -0.2
204,326 + CSW01_01055 0.56 +1.2
204,334 - CSW01_01055 0.58 -0.1
204,360 + CSW01_01055 0.65 +0.4
204,360 + CSW01_01055 0.65 +0.2
204,368 - CSW01_01055 0.67 -0.0
204,368 - CSW01_01055 0.67 -0.1
204,381 + CSW01_01055 0.71 -0.5
204,447 - CSW01_01055 0.88 +0.2
204,463 - +0.6
204,472 + -0.3
204,507 + -0.5
204,515 - -0.3
204,515 - +0.4
204,515 - -0.3
204,515 - +1.7
204,515 - -0.4
204,559 - -0.3
204,561 + -0.2
204,569 - +0.1
204,599 + +0.2
204,599 + +0.5
204,599 + +0.3
204,599 + +0.0
204,599 + +0.3
204,607 - -0.0
204,748 + CSW01_01060 0.12 +0.7
204,778 - CSW01_01060 0.14 +0.2
204,788 - CSW01_01060 0.14 +0.6
204,790 - CSW01_01060 0.14 -0.1
204,827 + CSW01_01060 0.16 -0.3
204,827 + CSW01_01060 0.16 -0.3
204,827 + CSW01_01060 0.16 -2.4
204,828 - CSW01_01060 0.16 +0.9
204,835 - CSW01_01060 0.17 +0.7
204,850 + CSW01_01060 0.18 +0.6
204,850 + CSW01_01060 0.18 -0.2
204,850 + CSW01_01060 0.18 +0.2
204,850 + CSW01_01060 0.18 -0.3
204,850 + CSW01_01060 0.18 -0.0
204,858 - CSW01_01060 0.18 +1.7
204,858 - CSW01_01060 0.18 -0.3
204,858 - CSW01_01060 0.18 +1.3
204,877 + CSW01_01060 0.19 -0.1
204,878 + CSW01_01060 0.19 +1.1
204,878 + CSW01_01060 0.19 -0.6
204,878 + CSW01_01060 0.19 +0.3
204,886 - CSW01_01060 0.20 +0.3
204,886 - CSW01_01060 0.20 -0.6
204,886 - CSW01_01060 0.20 +0.9
204,893 + CSW01_01060 0.20 +0.1
204,901 - CSW01_01060 0.20 +0.1
204,935 + CSW01_01060 0.22 +1.5

Or see this region's nucleotide sequence