Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01020

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01015 and CSW01_01020 are separated by 84 nucleotidesCSW01_01020 and CSW01_01025 are separated by 474 nucleotides CSW01_01015: CSW01_01015 - DNA helicase II, at 194,215 to 196,386 _01015 CSW01_01020: CSW01_01020 - hypothetical protein, at 196,471 to 196,656 _01020 CSW01_01025: CSW01_01025 - LysE family translocator, at 197,131 to 197,799 _01025 Position (kb) 196 197Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 195.481 kb on + strand, within CSW01_01015at 195.536 kb on + strand, within CSW01_01015at 195.561 kb on + strand, within CSW01_01015at 195.572 kb on - strand, within CSW01_01015at 195.604 kb on - strand, within CSW01_01015at 195.606 kb on + strand, within CSW01_01015at 195.614 kb on - strand, within CSW01_01015at 195.614 kb on - strand, within CSW01_01015at 195.614 kb on - strand, within CSW01_01015at 195.614 kb on - strand, within CSW01_01015at 195.636 kb on - strand, within CSW01_01015at 195.674 kb on + strand, within CSW01_01015at 195.682 kb on - strand, within CSW01_01015at 195.682 kb on - strand, within CSW01_01015at 195.797 kb on + strand, within CSW01_01015at 195.847 kb on + strand, within CSW01_01015at 195.847 kb on + strand, within CSW01_01015at 195.854 kb on - strand, within CSW01_01015at 195.855 kb on - strand, within CSW01_01015at 195.879 kb on + strand, within CSW01_01015at 195.886 kb on + strand, within CSW01_01015at 195.887 kb on - strand, within CSW01_01015at 195.904 kb on + strand, within CSW01_01015at 195.904 kb on + strand, within CSW01_01015at 195.904 kb on + strand, within CSW01_01015at 195.905 kb on - strand, within CSW01_01015at 195.912 kb on - strand, within CSW01_01015at 195.912 kb on - strand, within CSW01_01015at 195.935 kb on + strand, within CSW01_01015at 195.935 kb on + strand, within CSW01_01015at 195.943 kb on - strand, within CSW01_01015at 195.943 kb on - strand, within CSW01_01015at 195.943 kb on - strand, within CSW01_01015at 195.943 kb on - strand, within CSW01_01015at 195.943 kb on - strand, within CSW01_01015at 195.958 kb on + strand, within CSW01_01015at 196.008 kb on + strand, within CSW01_01015at 196.016 kb on - strand, within CSW01_01015at 196.018 kb on + strand, within CSW01_01015at 196.018 kb on + strand, within CSW01_01015at 196.018 kb on + strand, within CSW01_01015at 196.018 kb on + strand, within CSW01_01015at 196.018 kb on + strand, within CSW01_01015at 196.023 kb on + strand, within CSW01_01015at 196.023 kb on + strand, within CSW01_01015at 196.026 kb on - strand, within CSW01_01015at 196.026 kb on - strand, within CSW01_01015at 196.026 kb on - strand, within CSW01_01015at 196.099 kb on + strand, within CSW01_01015at 196.099 kb on + strand, within CSW01_01015at 196.107 kb on - strand, within CSW01_01015at 196.164 kb on - strand, within CSW01_01015at 196.178 kb on + strandat 196.178 kb on + strandat 196.181 kb on - strandat 196.186 kb on - strandat 196.186 kb on - strandat 196.354 kb on + strandat 196.362 kb on - strandat 196.380 kb on + strandat 196.380 kb on + strandat 196.380 kb on + strandat 196.388 kb on - strandat 196.388 kb on - strandat 196.390 kb on + strandat 196.499 kb on - strand, within CSW01_01020at 196.499 kb on - strand, within CSW01_01020at 196.499 kb on - strand, within CSW01_01020at 196.506 kb on + strand, within CSW01_01020at 196.548 kb on + strand, within CSW01_01020at 196.556 kb on - strand, within CSW01_01020at 196.605 kb on + strand, within CSW01_01020at 196.617 kb on + strand, within CSW01_01020at 196.639 kb on - strandat 196.745 kb on + strandat 196.750 kb on + strandat 196.758 kb on - strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.887 kb on + strandat 196.894 kb on + strandat 196.895 kb on - strandat 196.904 kb on + strandat 196.940 kb on + strandat 196.942 kb on - strandat 197.137 kb on - strandat 197.154 kb on - strandat 197.154 kb on - strandat 197.197 kb on + strandat 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.218 kb on - strand, within CSW01_01025at 197.219 kb on - strand, within CSW01_01025at 197.259 kb on + strand, within CSW01_01025at 197.304 kb on + strand, within CSW01_01025at 197.312 kb on - strand, within CSW01_01025at 197.312 kb on - strand, within CSW01_01025at 197.313 kb on - strand, within CSW01_01025at 197.338 kb on - strand, within CSW01_01025at 197.338 kb on - strand, within CSW01_01025at 197.349 kb on - strand, within CSW01_01025at 197.373 kb on - strand, within CSW01_01025at 197.380 kb on - strand, within CSW01_01025at 197.471 kb on - strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.475 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.485 kb on - strand, within CSW01_01025at 197.492 kb on + strand, within CSW01_01025at 197.492 kb on + strand, within CSW01_01025at 197.513 kb on + strand, within CSW01_01025at 197.536 kb on - strand, within CSW01_01025at 197.548 kb on - strand, within CSW01_01025at 197.566 kb on - strand, within CSW01_01025at 197.576 kb on + strand, within CSW01_01025

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B
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195,481 + CSW01_01015 0.58 -2.7
195,536 + CSW01_01015 0.61 -0.1
195,561 + CSW01_01015 0.62 -0.7
195,572 - CSW01_01015 0.62 -5.2
195,604 - CSW01_01015 0.64 -1.4
195,606 + CSW01_01015 0.64 -0.7
195,614 - CSW01_01015 0.64 -2.1
195,614 - CSW01_01015 0.64 -4.0
195,614 - CSW01_01015 0.64 -2.4
195,614 - CSW01_01015 0.64 -4.4
195,636 - CSW01_01015 0.65 -1.4
195,674 + CSW01_01015 0.67 -3.1
195,682 - CSW01_01015 0.68 -2.3
195,682 - CSW01_01015 0.68 -0.7
195,797 + CSW01_01015 0.73 -2.4
195,847 + CSW01_01015 0.75 -2.1
195,847 + CSW01_01015 0.75 -3.6
195,854 - CSW01_01015 0.75 -1.9
195,855 - CSW01_01015 0.76 +0.9
195,879 + CSW01_01015 0.77 -1.9
195,886 + CSW01_01015 0.77 -1.1
195,887 - CSW01_01015 0.77 -2.8
195,904 + CSW01_01015 0.78 -2.6
195,904 + CSW01_01015 0.78 -2.3
195,904 + CSW01_01015 0.78 -2.4
195,905 - CSW01_01015 0.78 -2.1
195,912 - CSW01_01015 0.78 -2.7
195,912 - CSW01_01015 0.78 -3.6
195,935 + CSW01_01015 0.79 -1.4
195,935 + CSW01_01015 0.79 -0.1
195,943 - CSW01_01015 0.80 -4.2
195,943 - CSW01_01015 0.80 -0.1
195,943 - CSW01_01015 0.80 -2.6
195,943 - CSW01_01015 0.80 -2.1
195,943 - CSW01_01015 0.80 -4.2
195,958 + CSW01_01015 0.80 +0.9
196,008 + CSW01_01015 0.83 -2.9
196,016 - CSW01_01015 0.83 -2.7
196,018 + CSW01_01015 0.83 -2.1
196,018 + CSW01_01015 0.83 -1.1
196,018 + CSW01_01015 0.83 -0.1
196,018 + CSW01_01015 0.83 -1.1
196,018 + CSW01_01015 0.83 -1.1
196,023 + CSW01_01015 0.83 -3.5
196,023 + CSW01_01015 0.83 -3.1
196,026 - CSW01_01015 0.83 -4.1
196,026 - CSW01_01015 0.83 -3.4
196,026 - CSW01_01015 0.83 -3.8
196,099 + CSW01_01015 0.87 -3.7
196,099 + CSW01_01015 0.87 -0.7
196,107 - CSW01_01015 0.87 -2.6
196,164 - CSW01_01015 0.90 -0.1
196,178 + -0.1
196,178 + -0.4
196,181 - -0.4
196,186 - +0.1
196,186 - +0.3
196,354 + -0.0
196,362 - -1.3
196,380 + +0.7
196,380 + +0.3
196,380 + +0.1
196,388 - +0.4
196,388 - -0.2
196,390 + +0.8
196,499 - CSW01_01020 0.15 +0.4
196,499 - CSW01_01020 0.15 -0.8
196,499 - CSW01_01020 0.15 -1.8
196,506 + CSW01_01020 0.19 -0.1
196,548 + CSW01_01020 0.41 -1.1
196,556 - CSW01_01020 0.46 +0.7
196,605 + CSW01_01020 0.72 -0.1
196,617 + CSW01_01020 0.78 -0.6
196,639 - +0.6
196,745 + -0.7
196,750 + +1.4
196,758 - +0.4
196,761 + -0.4
196,761 + +0.1
196,761 + +0.6
196,761 + -0.3
196,761 + +0.2
196,761 + +0.7
196,761 + +0.1
196,761 + +1.2
196,761 + -0.5
196,761 + -1.6
196,761 + +0.2
196,769 - +0.1
196,769 - +0.8
196,769 - -2.2
196,769 - -0.5
196,769 - +0.8
196,769 - -0.1
196,769 - -1.0
196,769 - -0.6
196,769 - -0.1
196,769 - +0.5
196,769 - +2.7
196,769 - +1.2
196,887 + +0.4
196,894 + -1.2
196,895 - +0.4
196,904 + -0.1
196,940 + -0.1
196,942 - -0.8
197,137 - -0.1
197,154 - -0.0
197,154 - -0.1
197,197 + +0.2
197,205 - CSW01_01025 0.11 +0.1
197,205 - CSW01_01025 0.11 +0.4
197,205 - CSW01_01025 0.11 +0.9
197,205 - CSW01_01025 0.11 +1.4
197,218 - CSW01_01025 0.13 +0.9
197,219 - CSW01_01025 0.13 -0.8
197,259 + CSW01_01025 0.19 +0.4
197,304 + CSW01_01025 0.26 +0.8
197,312 - CSW01_01025 0.27 +0.5
197,312 - CSW01_01025 0.27 +0.5
197,313 - CSW01_01025 0.27 -0.0
197,338 - CSW01_01025 0.31 +0.3
197,338 - CSW01_01025 0.31 +1.3
197,349 - CSW01_01025 0.33 -0.5
197,373 - CSW01_01025 0.36 +0.2
197,380 - CSW01_01025 0.37 -0.1
197,471 - CSW01_01025 0.51 -0.3
197,472 + CSW01_01025 0.51 -0.4
197,472 + CSW01_01025 0.51 -1.4
197,472 + CSW01_01025 0.51 +0.6
197,472 + CSW01_01025 0.51 +0.3
197,472 + CSW01_01025 0.51 -0.5
197,475 - CSW01_01025 0.51 -0.9
197,480 - CSW01_01025 0.52 +0.6
197,480 - CSW01_01025 0.52 +0.5
197,480 - CSW01_01025 0.52 +0.1
197,480 - CSW01_01025 0.52 -0.8
197,480 - CSW01_01025 0.52 -1.3
197,480 - CSW01_01025 0.52 +0.1
197,480 - CSW01_01025 0.52 +0.9
197,480 - CSW01_01025 0.52 -1.0
197,480 - CSW01_01025 0.52 +0.5
197,480 - CSW01_01025 0.52 +0.4
197,480 - CSW01_01025 0.52 -0.8
197,485 - CSW01_01025 0.53 -0.5
197,492 + CSW01_01025 0.54 -0.3
197,492 + CSW01_01025 0.54 -0.5
197,513 + CSW01_01025 0.57 +0.3
197,536 - CSW01_01025 0.61 -0.0
197,548 - CSW01_01025 0.62 +0.0
197,566 - CSW01_01025 0.65 +1.2
197,576 + CSW01_01025 0.67 -0.1

Or see this region's nucleotide sequence