Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00265 and CSW01_00270 are separated by 157 nucleotides CSW01_00270 and CSW01_00275 are separated by 18 nucleotides CSW01_00275 and CSW01_00280 are separated by 61 nucleotides CSW01_00280 and CSW01_00285 overlap by 4 nucleotides
CSW01_00265: CSW01_00265 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 49,461 to 49,946
_00265
CSW01_00270: CSW01_00270 - threonylcarbamoyl-AMP synthase, at 50,104 to 50,670
_00270
CSW01_00275: CSW01_00275 - coproporphyrinogen III oxidase, at 50,689 to 51,606
_00275
CSW01_00280: CSW01_00280 - shikimate dehydrogenase, at 51,668 to 52,504
_00280
CSW01_00285: CSW01_00285 - DUF1488 domain-containing protein, at 52,501 to 52,776
_00285
Position (kb) 50
51
52 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 49.698 kb on + strand, within CSW01_00265 at 49.698 kb on + strand, within CSW01_00265 at 49.698 kb on + strand, within CSW01_00265 at 49.705 kb on - strand, within CSW01_00265 at 49.705 kb on - strand, within CSW01_00265 at 49.706 kb on - strand, within CSW01_00265 at 49.706 kb on - strand, within CSW01_00265 at 49.706 kb on - strand, within CSW01_00265 at 49.768 kb on - strand, within CSW01_00265 at 49.775 kb on + strand, within CSW01_00265 at 49.775 kb on + strand, within CSW01_00265 at 49.775 kb on + strand, within CSW01_00265 at 49.775 kb on + strand, within CSW01_00265 at 49.775 kb on + strand, within CSW01_00265 at 49.783 kb on - strand, within CSW01_00265 at 49.802 kb on + strand, within CSW01_00265 at 49.828 kb on - strand, within CSW01_00265 at 49.847 kb on + strand, within CSW01_00265 at 49.855 kb on - strand, within CSW01_00265 at 49.873 kb on - strand, within CSW01_00265 at 49.874 kb on + strand, within CSW01_00265 at 49.883 kb on + strand, within CSW01_00265 at 49.889 kb on - strand, within CSW01_00265 at 49.895 kb on + strand, within CSW01_00265 at 49.903 kb on - strand at 49.903 kb on - strand at 49.951 kb on + strand at 49.959 kb on - strand at 49.961 kb on + strand at 49.969 kb on - strand at 49.969 kb on - strand at 50.061 kb on - strand at 50.075 kb on + strand at 50.083 kb on - strand at 50.083 kb on - strand at 50.083 kb on - strand at 50.085 kb on + strand at 50.110 kb on + strand at 50.128 kb on - strand at 50.128 kb on - strand at 50.128 kb on - strand at 50.145 kb on + strand at 50.145 kb on + strand at 50.145 kb on + strand at 50.145 kb on + strand at 50.145 kb on + strand at 50.148 kb on - strand at 50.153 kb on - strand at 50.153 kb on - strand at 50.192 kb on - strand, within CSW01_00270 at 50.216 kb on + strand, within CSW01_00270 at 50.221 kb on + strand, within CSW01_00270 at 50.221 kb on + strand, within CSW01_00270 at 50.224 kb on - strand, within CSW01_00270 at 50.229 kb on - strand, within CSW01_00270 at 50.229 kb on - strand, within CSW01_00270 at 50.301 kb on - strand, within CSW01_00270 at 50.361 kb on + strand, within CSW01_00270 at 50.373 kb on + strand, within CSW01_00270 at 50.373 kb on + strand, within CSW01_00270 at 50.376 kb on - strand, within CSW01_00270 at 50.376 kb on - strand, within CSW01_00270 at 50.381 kb on - strand, within CSW01_00270 at 50.381 kb on - strand, within CSW01_00270 at 50.381 kb on - strand, within CSW01_00270 at 50.381 kb on - strand, within CSW01_00270 at 50.396 kb on + strand, within CSW01_00270 at 50.416 kb on - strand, within CSW01_00270 at 50.424 kb on + strand, within CSW01_00270 at 50.432 kb on + strand, within CSW01_00270 at 50.432 kb on - strand, within CSW01_00270 at 50.432 kb on - strand, within CSW01_00270 at 50.445 kb on - strand, within CSW01_00270 at 50.476 kb on + strand, within CSW01_00270 at 50.480 kb on - strand, within CSW01_00270 at 50.505 kb on + strand, within CSW01_00270 at 50.510 kb on + strand, within CSW01_00270 at 50.510 kb on + strand, within CSW01_00270 at 50.510 kb on + strand, within CSW01_00270 at 50.510 kb on + strand, within CSW01_00270 at 50.518 kb on - strand, within CSW01_00270 at 50.518 kb on - strand, within CSW01_00270 at 50.518 kb on - strand, within CSW01_00270 at 50.518 kb on - strand, within CSW01_00270 at 50.518 kb on - strand, within CSW01_00270 at 50.518 kb on - strand, within CSW01_00270 at 50.518 kb on - strand, within CSW01_00270 at 50.518 kb on - strand, within CSW01_00270 at 50.523 kb on - strand, within CSW01_00270 at 50.537 kb on - strand, within CSW01_00270 at 50.596 kb on + strand, within CSW01_00270 at 50.612 kb on + strand, within CSW01_00270 at 50.645 kb on + strand at 50.645 kb on + strand at 50.653 kb on + strand at 50.653 kb on - strand at 50.653 kb on - strand at 50.653 kb on - strand at 50.654 kb on + strand at 50.662 kb on - strand at 50.662 kb on - strand at 50.662 kb on - strand at 50.664 kb on + strand at 50.665 kb on + strand at 50.665 kb on + strand at 50.665 kb on + strand at 50.665 kb on + strand at 50.665 kb on + strand at 50.665 kb on + strand at 50.665 kb on + strand at 50.665 kb on + strand at 50.673 kb on - strand at 50.673 kb on - strand at 50.673 kb on - strand at 50.673 kb on - strand at 50.673 kb on - strand at 50.673 kb on - strand at 50.673 kb on - strand at 50.673 kb on - strand at 50.673 kb on - strand at 50.673 kb on - strand at 50.678 kb on - strand at 50.683 kb on - strand at 50.683 kb on - strand at 51.603 kb on + strand at 51.618 kb on - strand at 51.623 kb on + strand at 51.628 kb on - strand at 51.645 kb on - strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.672 kb on - strand at 51.672 kb on - strand at 51.672 kb on - strand at 51.672 kb on - strand at 51.672 kb on - strand at 51.672 kb on - strand at 51.672 kb on - strand at 51.672 kb on - strand at 51.672 kb on - strand at 51.672 kb on - strand at 51.672 kb on - strand at 51.672 kb on - strand at 51.708 kb on + strand at 51.716 kb on - strand at 51.758 kb on + strand, within CSW01_00280 at 51.766 kb on + strand, within CSW01_00280 at 51.766 kb on - strand, within CSW01_00280 at 51.775 kb on - strand, within CSW01_00280 at 51.777 kb on + strand, within CSW01_00280 at 51.777 kb on + strand, within CSW01_00280 at 51.777 kb on + strand, within CSW01_00280 at 51.777 kb on + strand, within CSW01_00280 at 51.777 kb on + strand, within CSW01_00280 at 51.785 kb on - strand, within CSW01_00280 at 51.785 kb on - strand, within CSW01_00280 at 51.785 kb on - strand, within CSW01_00280 at 51.787 kb on + strand, within CSW01_00280 at 51.787 kb on + strand, within CSW01_00280 at 51.787 kb on + strand, within CSW01_00280 at 51.787 kb on + strand, within CSW01_00280 at 51.787 kb on + strand, within CSW01_00280 at 51.795 kb on - strand, within CSW01_00280 at 51.795 kb on - strand, within CSW01_00280 at 51.795 kb on - strand, within CSW01_00280 at 51.838 kb on + strand, within CSW01_00280 at 51.849 kb on + strand, within CSW01_00280 at 51.849 kb on + strand, within CSW01_00280 at 51.849 kb on + strand, within CSW01_00280 at 51.849 kb on + strand, within CSW01_00280 at 51.857 kb on - strand, within CSW01_00280 at 51.857 kb on - strand, within CSW01_00280 at 51.857 kb on - strand, within CSW01_00280 at 51.857 kb on - strand, within CSW01_00280 at 51.881 kb on + strand, within CSW01_00280 at 51.900 kb on + strand, within CSW01_00280 at 51.917 kb on + strand, within CSW01_00280 at 51.917 kb on + strand, within CSW01_00280 at 51.925 kb on - strand, within CSW01_00280 at 51.939 kb on - strand, within CSW01_00280 at 51.986 kb on + strand, within CSW01_00280 at 51.986 kb on + strand, within CSW01_00280 at 51.994 kb on - strand, within CSW01_00280 at 51.994 kb on - strand, within CSW01_00280 at 51.994 kb on - strand, within CSW01_00280 at 51.998 kb on + strand, within CSW01_00280 at 52.027 kb on + strand, within CSW01_00280 at 52.035 kb on - strand, within CSW01_00280 at 52.111 kb on + strand, within CSW01_00280 at 52.111 kb on + strand, within CSW01_00280 at 52.113 kb on + strand, within CSW01_00280 at 52.113 kb on + strand, within CSW01_00280 at 52.135 kb on - strand, within CSW01_00280 at 52.190 kb on - strand, within CSW01_00280 at 52.197 kb on + strand, within CSW01_00280 at 52.197 kb on + strand, within CSW01_00280 at 52.197 kb on + strand, within CSW01_00280 at 52.197 kb on + strand, within CSW01_00280 at 52.197 kb on + strand, within CSW01_00280 at 52.218 kb on + strand, within CSW01_00280 at 52.226 kb on + strand, within CSW01_00280 at 52.226 kb on - strand, within CSW01_00280 at 52.226 kb on - strand, within CSW01_00280 at 52.226 kb on - strand, within CSW01_00280 at 52.226 kb on - strand, within CSW01_00280 at 52.226 kb on - strand, within CSW01_00280 at 52.226 kb on - strand, within CSW01_00280 at 52.226 kb on - strand, within CSW01_00280 at 52.267 kb on + strand, within CSW01_00280 at 52.308 kb on + strand, within CSW01_00280 at 52.330 kb on + strand, within CSW01_00280 at 52.330 kb on + strand, within CSW01_00280 at 52.331 kb on + strand, within CSW01_00280 at 52.331 kb on + strand, within CSW01_00280 at 52.338 kb on - strand, within CSW01_00280 at 52.339 kb on - strand, within CSW01_00280 at 52.340 kb on - strand, within CSW01_00280 at 52.340 kb on - strand, within CSW01_00280 at 52.369 kb on - strand, within CSW01_00280 at 52.371 kb on - strand, within CSW01_00280 at 52.388 kb on + strand, within CSW01_00280 at 52.430 kb on - strand at 52.430 kb on - strand at 52.448 kb on - strand at 52.535 kb on + strand, within CSW01_00285 at 52.543 kb on - strand, within CSW01_00285 at 52.543 kb on - strand, within CSW01_00285 at 52.558 kb on + strand, within CSW01_00285 at 52.573 kb on + strand, within CSW01_00285 at 52.583 kb on - strand, within CSW01_00285
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19B remove 49,698 + CSW01_00265 0.49 -0.3 49,698 + CSW01_00265 0.49 -1.2 49,698 + CSW01_00265 0.49 -0.3 49,705 - CSW01_00265 0.50 -0.3 49,705 - CSW01_00265 0.50 +0.7 49,706 - CSW01_00265 0.50 -0.0 49,706 - CSW01_00265 0.50 +0.2 49,706 - CSW01_00265 0.50 -0.1 49,768 - CSW01_00265 0.63 -0.6 49,775 + CSW01_00265 0.65 -0.6 49,775 + CSW01_00265 0.65 -1.0 49,775 + CSW01_00265 0.65 -1.2 49,775 + CSW01_00265 0.65 +0.7 49,775 + CSW01_00265 0.65 -0.7 49,783 - CSW01_00265 0.66 -0.6 49,802 + CSW01_00265 0.70 -0.7 49,828 - CSW01_00265 0.76 +0.4 49,847 + CSW01_00265 0.79 -0.2 49,855 - CSW01_00265 0.81 +0.2 49,873 - CSW01_00265 0.85 +0.1 49,874 + CSW01_00265 0.85 -0.6 49,883 + CSW01_00265 0.87 +0.3 49,889 - CSW01_00265 0.88 -1.0 49,895 + CSW01_00265 0.89 -0.7 49,903 - -1.3 49,903 - -0.9 49,951 + +1.2 49,959 - +0.9 49,961 + -0.7 49,969 - +0.3 49,969 - -0.2 50,061 - +0.5 50,075 + +0.0 50,083 - +1.9 50,083 - +0.9 50,083 - -0.2 50,085 + +0.4 50,110 + +1.5 50,128 - +0.6 50,128 - +0.5 50,128 - -0.4 50,145 + -0.0 50,145 + -0.0 50,145 + +0.3 50,145 + +0.1 50,145 + +0.4 50,148 - -0.4 50,153 - +0.6 50,153 - +0.8 50,192 - CSW01_00270 0.16 +0.4 50,216 + CSW01_00270 0.20 +0.5 50,221 + CSW01_00270 0.21 +1.1 50,221 + CSW01_00270 0.21 +0.7 50,224 - CSW01_00270 0.21 +0.4 50,229 - CSW01_00270 0.22 +0.7 50,229 - CSW01_00270 0.22 -0.7 50,301 - CSW01_00270 0.35 -0.5 50,361 + CSW01_00270 0.45 -0.1 50,373 + CSW01_00270 0.47 +0.5 50,373 + CSW01_00270 0.47 +0.8 50,376 - CSW01_00270 0.48 +0.7 50,376 - CSW01_00270 0.48 +0.2 50,381 - CSW01_00270 0.49 -0.1 50,381 - CSW01_00270 0.49 -2.3 50,381 - CSW01_00270 0.49 +0.2 50,381 - CSW01_00270 0.49 +0.2 50,396 + CSW01_00270 0.51 -0.1 50,416 - CSW01_00270 0.55 +0.0 50,424 + CSW01_00270 0.56 +0.5 50,432 + CSW01_00270 0.58 +0.7 50,432 - CSW01_00270 0.58 +1.2 50,432 - CSW01_00270 0.58 +0.4 50,445 - CSW01_00270 0.60 +0.8 50,476 + CSW01_00270 0.66 +0.8 50,480 - CSW01_00270 0.66 +0.2 50,505 + CSW01_00270 0.71 -0.1 50,510 + CSW01_00270 0.72 -0.3 50,510 + CSW01_00270 0.72 -1.8 50,510 + CSW01_00270 0.72 +0.5 50,510 + CSW01_00270 0.72 +0.8 50,518 - CSW01_00270 0.73 +0.8 50,518 - CSW01_00270 0.73 +0.5 50,518 - CSW01_00270 0.73 +0.6 50,518 - CSW01_00270 0.73 +0.1 50,518 - CSW01_00270 0.73 +0.9 50,518 - CSW01_00270 0.73 +1.1 50,518 - CSW01_00270 0.73 +0.2 50,518 - CSW01_00270 0.73 +1.6 50,523 - CSW01_00270 0.74 -0.8 50,537 - CSW01_00270 0.76 +0.6 50,596 + CSW01_00270 0.87 +0.6 50,612 + CSW01_00270 0.90 +0.3 50,645 + +0.6 50,645 + -0.4 50,653 + +0.4 50,653 - +0.7 50,653 - +1.3 50,653 - -0.2 50,654 + +0.5 50,662 - -0.4 50,662 - -1.2 50,662 - +0.2 50,664 + +0.7 50,665 + +0.5 50,665 + +0.2 50,665 + -0.2 50,665 + +0.3 50,665 + +1.2 50,665 + -1.5 50,665 + +0.7 50,665 + -0.1 50,673 - +0.1 50,673 - -0.9 50,673 - +1.4 50,673 - +0.1 50,673 - +0.5 50,673 - +0.1 50,673 - +0.4 50,673 - +0.7 50,673 - +1.0 50,673 - -0.3 50,678 - -0.8 50,683 - +0.0 50,683 - +0.3 51,603 + +1.5 51,618 - +0.1 51,623 + +0.2 51,628 - -0.1 51,645 - -0.2 51,664 + -0.7 51,664 + +0.2 51,664 + +0.0 51,664 + +0.6 51,664 + +0.0 51,664 + +0.6 51,672 - +0.0 51,672 - +0.1 51,672 - +0.5 51,672 - +0.1 51,672 - +0.7 51,672 - +0.3 51,672 - +0.9 51,672 - +0.0 51,672 - -1.1 51,672 - -1.2 51,672 - +0.8 51,672 - +0.2 51,708 + +0.1 51,716 - -0.7 51,758 + CSW01_00280 0.11 +0.1 51,766 + CSW01_00280 0.12 -1.1 51,766 - CSW01_00280 0.12 -0.1 51,775 - CSW01_00280 0.13 -1.7 51,777 + CSW01_00280 0.13 +0.3 51,777 + CSW01_00280 0.13 +0.3 51,777 + CSW01_00280 0.13 -0.7 51,777 + CSW01_00280 0.13 +1.0 51,777 + CSW01_00280 0.13 +0.9 51,785 - CSW01_00280 0.14 +1.9 51,785 - CSW01_00280 0.14 -0.1 51,785 - CSW01_00280 0.14 +0.2 51,787 + CSW01_00280 0.14 +0.5 51,787 + CSW01_00280 0.14 -0.4 51,787 + CSW01_00280 0.14 -0.7 51,787 + CSW01_00280 0.14 +0.5 51,787 + CSW01_00280 0.14 -1.2 51,795 - CSW01_00280 0.15 +1.6 51,795 - CSW01_00280 0.15 +2.5 51,795 - CSW01_00280 0.15 -0.5 51,838 + CSW01_00280 0.20 -0.7 51,849 + CSW01_00280 0.22 +0.0 51,849 + CSW01_00280 0.22 -0.4 51,849 + CSW01_00280 0.22 +1.5 51,849 + CSW01_00280 0.22 -0.7 51,857 - CSW01_00280 0.23 -1.1 51,857 - CSW01_00280 0.23 -0.2 51,857 - CSW01_00280 0.23 +0.1 51,857 - CSW01_00280 0.23 -1.4 51,881 + CSW01_00280 0.25 +0.8 51,900 + CSW01_00280 0.28 +1.3 51,917 + CSW01_00280 0.30 -0.1 51,917 + CSW01_00280 0.30 -0.7 51,925 - CSW01_00280 0.31 -0.5 51,939 - CSW01_00280 0.32 -1.0 51,986 + CSW01_00280 0.38 +1.1 51,986 + CSW01_00280 0.38 +2.8 51,994 - CSW01_00280 0.39 +0.9 51,994 - CSW01_00280 0.39 -0.2 51,994 - CSW01_00280 0.39 -1.7 51,998 + CSW01_00280 0.39 +0.7 52,027 + CSW01_00280 0.43 -1.1 52,035 - CSW01_00280 0.44 -0.5 52,111 + CSW01_00280 0.53 -0.1 52,111 + CSW01_00280 0.53 -0.1 52,113 + CSW01_00280 0.53 +0.8 52,113 + CSW01_00280 0.53 +0.9 52,135 - CSW01_00280 0.56 -0.8 52,190 - CSW01_00280 0.62 -0.7 52,197 + CSW01_00280 0.63 -1.7 52,197 + CSW01_00280 0.63 +0.5 52,197 + CSW01_00280 0.63 -1.3 52,197 + CSW01_00280 0.63 +0.4 52,197 + CSW01_00280 0.63 -1.1 52,218 + CSW01_00280 0.66 +0.3 52,226 + CSW01_00280 0.67 +0.9 52,226 - CSW01_00280 0.67 +0.4 52,226 - CSW01_00280 0.67 -1.4 52,226 - CSW01_00280 0.67 -0.5 52,226 - CSW01_00280 0.67 +0.5 52,226 - CSW01_00280 0.67 -0.7 52,226 - CSW01_00280 0.67 -0.3 52,226 - CSW01_00280 0.67 +0.9 52,267 + CSW01_00280 0.72 -0.8 52,308 + CSW01_00280 0.76 +1.2 52,330 + CSW01_00280 0.79 -1.1 52,330 + CSW01_00280 0.79 -0.1 52,331 + CSW01_00280 0.79 +1.4 52,331 + CSW01_00280 0.79 -1.1 52,338 - CSW01_00280 0.80 -0.4 52,339 - CSW01_00280 0.80 +0.9 52,340 - CSW01_00280 0.80 -0.1 52,340 - CSW01_00280 0.80 +1.1 52,369 - CSW01_00280 0.84 +1.4 52,371 - CSW01_00280 0.84 +1.5 52,388 + CSW01_00280 0.86 -0.1 52,430 - -1.5 52,430 - -0.5 52,448 - -0.4 52,535 + CSW01_00285 0.12 +0.6 52,543 - CSW01_00285 0.15 +0.7 52,543 - CSW01_00285 0.15 +0.2 52,558 + CSW01_00285 0.21 -0.5 52,573 + CSW01_00285 0.26 +0.4 52,583 - CSW01_00285 0.30 +0.4
Or see this region's nucleotide sequence