Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29140

Experiment: Gly-Glu (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_29135 and AO356_29140 are separated by 4 nucleotidesAO356_29140 and AO356_29145 are separated by 69 nucleotides AO356_29135: AO356_29135 - RND transporter, at 6,772,572 to 6,775,103 _29135 AO356_29140: AO356_29140 - BNR domain-containing protein, at 6,775,108 to 6,776,211 _29140 AO356_29145: AO356_29145 - hypothetical protein, at 6,776,281 to 6,777,645 _29145 Position (kb) 6775 6776 6777Strain fitness (log2 ratio) -1 0 1at 6774.306 kb on + strand, within AO356_29135at 6774.325 kb on + strand, within AO356_29135at 6774.452 kb on - strand, within AO356_29135at 6774.534 kb on + strand, within AO356_29135at 6774.534 kb on + strand, within AO356_29135at 6774.640 kb on + strand, within AO356_29135at 6774.727 kb on + strand, within AO356_29135at 6774.727 kb on + strand, within AO356_29135at 6774.728 kb on - strand, within AO356_29135at 6774.728 kb on - strand, within AO356_29135at 6774.755 kb on - strand, within AO356_29135at 6774.802 kb on + strand, within AO356_29135at 6774.803 kb on - strand, within AO356_29135at 6774.881 kb on - strandat 6774.881 kb on - strandat 6774.881 kb on - strandat 6774.892 kb on + strandat 6774.893 kb on - strandat 6776.068 kb on + strand, within AO356_29140at 6776.169 kb on - strandat 6776.211 kb on + strandat 6776.216 kb on + strandat 6776.217 kb on - strandat 6776.351 kb on + strandat 6776.411 kb on + strandat 6776.455 kb on + strand, within AO356_29145at 6776.549 kb on + strand, within AO356_29145at 6776.618 kb on - strand, within AO356_29145at 6776.618 kb on - strand, within AO356_29145at 6776.618 kb on - strand, within AO356_29145at 6776.618 kb on - strand, within AO356_29145at 6776.634 kb on - strand, within AO356_29145at 6776.705 kb on + strand, within AO356_29145at 6776.706 kb on - strand, within AO356_29145at 6776.714 kb on + strand, within AO356_29145at 6776.714 kb on + strand, within AO356_29145at 6776.715 kb on - strand, within AO356_29145at 6776.715 kb on - strand, within AO356_29145at 6777.011 kb on + strand, within AO356_29145at 6777.080 kb on + strand, within AO356_29145at 6777.081 kb on - strand, within AO356_29145

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
remove
6,774,306 + AO356_29135 0.68 +0.8
6,774,325 + AO356_29135 0.69 -0.4
6,774,452 - AO356_29135 0.74 +0.7
6,774,534 + AO356_29135 0.77 +0.6
6,774,534 + AO356_29135 0.77 +0.5
6,774,640 + AO356_29135 0.82 +0.2
6,774,727 + AO356_29135 0.85 +1.3
6,774,727 + AO356_29135 0.85 +1.1
6,774,728 - AO356_29135 0.85 +0.3
6,774,728 - AO356_29135 0.85 -0.3
6,774,755 - AO356_29135 0.86 +0.1
6,774,802 + AO356_29135 0.88 +0.0
6,774,803 - AO356_29135 0.88 +0.0
6,774,881 - -0.3
6,774,881 - +0.9
6,774,881 - +0.5
6,774,892 + -0.1
6,774,893 - -0.1
6,776,068 + AO356_29140 0.87 +0.6
6,776,169 - +0.0
6,776,211 + +0.8
6,776,216 + -0.0
6,776,217 - +0.1
6,776,351 + -0.4
6,776,411 + +0.6
6,776,455 + AO356_29145 0.13 +0.5
6,776,549 + AO356_29145 0.20 +0.4
6,776,618 - AO356_29145 0.25 +0.8
6,776,618 - AO356_29145 0.25 +0.9
6,776,618 - AO356_29145 0.25 +0.1
6,776,618 - AO356_29145 0.25 +0.3
6,776,634 - AO356_29145 0.26 +0.4
6,776,705 + AO356_29145 0.31 -0.3
6,776,706 - AO356_29145 0.31 +0.8
6,776,714 + AO356_29145 0.32 +0.2
6,776,714 + AO356_29145 0.32 +0.3
6,776,715 - AO356_29145 0.32 +1.3
6,776,715 - AO356_29145 0.32 -0.2
6,777,011 + AO356_29145 0.53 -0.4
6,777,080 + AO356_29145 0.59 -0.5
6,777,081 - AO356_29145 0.59 +1.0

Or see this region's nucleotide sequence