Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27860

Experiment: Gly-Glu (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_27855 and AO356_27860 are separated by 818 nucleotidesAO356_27860 and AO356_27865 are separated by 24 nucleotidesAO356_27865 and AO356_27870 are separated by 57 nucleotides AO356_27855: AO356_27855 - 6-phosphogluconate dehydrogenase, at 6,357,540 to 6,358,520 _27855 AO356_27860: AO356_27860 - hypothetical protein, at 6,359,339 to 6,361,078 _27860 AO356_27865: AO356_27865 - GNAT family acetyltransferase, at 6,361,103 to 6,361,597 _27865 AO356_27870: AO356_27870 - ATPase, at 6,361,655 to 6,362,776 _27870 Position (kb) 6359 6360 6361 6362Strain fitness (log2 ratio) -2 -1 0 1at 6358.436 kb on - strandat 6358.478 kb on + strandat 6358.535 kb on + strandat 6358.535 kb on + strandat 6358.544 kb on + strandat 6358.545 kb on - strandat 6358.563 kb on + strandat 6358.564 kb on - strandat 6358.577 kb on - strandat 6358.586 kb on + strandat 6358.586 kb on + strandat 6358.606 kb on + strandat 6358.606 kb on + strandat 6358.606 kb on + strandat 6358.606 kb on + strandat 6358.606 kb on + strandat 6358.607 kb on - strandat 6358.730 kb on + strandat 6358.731 kb on - strandat 6358.731 kb on - strandat 6358.731 kb on - strandat 6358.762 kb on + strandat 6358.762 kb on + strandat 6358.763 kb on - strandat 6358.763 kb on - strandat 6358.763 kb on - strandat 6358.763 kb on - strandat 6358.764 kb on + strandat 6358.764 kb on + strandat 6358.765 kb on - strandat 6358.765 kb on - strandat 6358.765 kb on - strandat 6358.765 kb on - strandat 6358.773 kb on + strandat 6358.834 kb on + strandat 6358.835 kb on - strandat 6359.060 kb on - strandat 6359.249 kb on + strandat 6359.252 kb on + strandat 6359.253 kb on - strandat 6359.542 kb on + strand, within AO356_27860at 6359.543 kb on - strand, within AO356_27860at 6359.607 kb on - strand, within AO356_27860at 6359.618 kb on + strand, within AO356_27860at 6359.619 kb on - strand, within AO356_27860at 6359.688 kb on - strand, within AO356_27860at 6359.750 kb on + strand, within AO356_27860at 6359.780 kb on + strand, within AO356_27860at 6359.780 kb on + strand, within AO356_27860at 6360.104 kb on + strand, within AO356_27860at 6360.105 kb on - strand, within AO356_27860at 6360.191 kb on + strand, within AO356_27860at 6360.191 kb on + strand, within AO356_27860at 6360.387 kb on - strand, within AO356_27860at 6360.387 kb on - strand, within AO356_27860at 6360.422 kb on + strand, within AO356_27860at 6360.422 kb on + strand, within AO356_27860at 6360.422 kb on + strand, within AO356_27860at 6360.423 kb on - strand, within AO356_27860at 6360.519 kb on - strand, within AO356_27860at 6360.519 kb on - strand, within AO356_27860at 6360.519 kb on - strand, within AO356_27860at 6360.614 kb on + strand, within AO356_27860at 6360.615 kb on - strand, within AO356_27860at 6360.632 kb on + strand, within AO356_27860at 6360.633 kb on - strand, within AO356_27860at 6360.702 kb on - strand, within AO356_27860at 6360.748 kb on + strand, within AO356_27860at 6360.789 kb on - strand, within AO356_27860at 6360.941 kb on - strandat 6360.999 kb on - strandat 6361.077 kb on - strandat 6361.077 kb on - strandat 6361.104 kb on + strandat 6361.105 kb on - strandat 6361.129 kb on + strandat 6361.129 kb on + strandat 6361.129 kb on + strandat 6361.129 kb on + strandat 6361.130 kb on - strandat 6361.130 kb on - strandat 6361.130 kb on - strandat 6361.252 kb on + strand, within AO356_27865at 6361.509 kb on + strand, within AO356_27865at 6361.557 kb on + strandat 6361.619 kb on - strandat 6361.649 kb on + strandat 6361.731 kb on + strandat 6361.731 kb on + strandat 6361.743 kb on + strandat 6361.743 kb on + strandat 6361.744 kb on - strandat 6361.744 kb on - strandat 6361.744 kb on - strandat 6361.797 kb on + strand, within AO356_27870at 6361.797 kb on + strand, within AO356_27870at 6361.797 kb on + strand, within AO356_27870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
remove
6,358,436 - +0.2
6,358,478 + +0.1
6,358,535 + +0.1
6,358,535 + -0.4
6,358,544 + +0.3
6,358,545 - +1.0
6,358,563 + +1.1
6,358,564 - +0.6
6,358,577 - +0.1
6,358,586 + +0.0
6,358,586 + -0.1
6,358,606 + -0.6
6,358,606 + -2.0
6,358,606 + -0.3
6,358,606 + -0.1
6,358,606 + -0.1
6,358,607 - +1.5
6,358,730 + +0.0
6,358,731 - +1.0
6,358,731 - +1.3
6,358,731 - -0.3
6,358,762 + +0.0
6,358,762 + +0.6
6,358,763 - +0.3
6,358,763 - +1.2
6,358,763 - +1.6
6,358,763 - +0.4
6,358,764 + -2.6
6,358,764 + +0.4
6,358,765 - +0.7
6,358,765 - +0.6
6,358,765 - -0.2
6,358,765 - +0.8
6,358,773 + -0.1
6,358,834 + +0.1
6,358,835 - -0.1
6,359,060 - +0.6
6,359,249 + +0.0
6,359,252 + +0.6
6,359,253 - +0.8
6,359,542 + AO356_27860 0.12 -0.4
6,359,543 - AO356_27860 0.12 +0.1
6,359,607 - AO356_27860 0.15 -0.3
6,359,618 + AO356_27860 0.16 +0.3
6,359,619 - AO356_27860 0.16 -0.6
6,359,688 - AO356_27860 0.20 +0.1
6,359,750 + AO356_27860 0.24 +0.1
6,359,780 + AO356_27860 0.25 +0.3
6,359,780 + AO356_27860 0.25 -0.2
6,360,104 + AO356_27860 0.44 -0.0
6,360,105 - AO356_27860 0.44 +0.3
6,360,191 + AO356_27860 0.49 +0.3
6,360,191 + AO356_27860 0.49 +0.4
6,360,387 - AO356_27860 0.60 +0.1
6,360,387 - AO356_27860 0.60 +0.8
6,360,422 + AO356_27860 0.62 -0.9
6,360,422 + AO356_27860 0.62 +0.8
6,360,422 + AO356_27860 0.62 -0.3
6,360,423 - AO356_27860 0.62 +0.4
6,360,519 - AO356_27860 0.68 -1.8
6,360,519 - AO356_27860 0.68 +0.1
6,360,519 - AO356_27860 0.68 +0.1
6,360,614 + AO356_27860 0.73 -0.0
6,360,615 - AO356_27860 0.73 -0.5
6,360,632 + AO356_27860 0.74 -0.9
6,360,633 - AO356_27860 0.74 +0.3
6,360,702 - AO356_27860 0.78 +0.2
6,360,748 + AO356_27860 0.81 +0.3
6,360,789 - AO356_27860 0.83 -0.2
6,360,941 - -0.2
6,360,999 - +0.4
6,361,077 - +0.4
6,361,077 - -1.1
6,361,104 + +0.2
6,361,105 - +0.1
6,361,129 + -1.9
6,361,129 + -0.9
6,361,129 + +0.8
6,361,129 + -0.6
6,361,130 - -0.3
6,361,130 - +1.1
6,361,130 - +0.1
6,361,252 + AO356_27865 0.30 +0.2
6,361,509 + AO356_27865 0.82 -0.0
6,361,557 + -0.6
6,361,619 - -0.8
6,361,649 + -0.5
6,361,731 + +0.9
6,361,731 + +0.7
6,361,743 + -0.9
6,361,743 + -0.1
6,361,744 - +0.8
6,361,744 - +0.2
6,361,744 - +0.1
6,361,797 + AO356_27870 0.13 -0.3
6,361,797 + AO356_27870 0.13 +0.8
6,361,797 + AO356_27870 0.13 +0.4

Or see this region's nucleotide sequence