Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23330

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23325 and AO356_23330 are separated by 23 nucleotidesAO356_23330 and AO356_23335 are separated by 195 nucleotidesAO356_23335 and AO356_23340 are separated by 172 nucleotides AO356_23325: AO356_23325 - short-chain dehydrogenase, at 5,230,638 to 5,231,405 _23325 AO356_23330: AO356_23330 - aminoglycoside phosphotransferase, at 5,231,429 to 5,232,496 _23330 AO356_23335: AO356_23335 - hypothetical protein, at 5,232,692 to 5,233,087 _23335 AO356_23340: AO356_23340 - chemotaxis protein, at 5,233,260 to 5,235,287 _23340 Position (kb) 5231 5232 5233Strain fitness (log2 ratio) -1 0 1 2at 5230.684 kb on + strandat 5230.684 kb on + strandat 5230.684 kb on + strandat 5230.685 kb on - strandat 5230.685 kb on - strandat 5230.685 kb on - strandat 5230.709 kb on - strandat 5230.924 kb on + strand, within AO356_23325at 5230.924 kb on + strand, within AO356_23325at 5230.924 kb on + strand, within AO356_23325at 5230.925 kb on - strand, within AO356_23325at 5230.925 kb on - strand, within AO356_23325at 5230.925 kb on - strand, within AO356_23325at 5230.925 kb on - strand, within AO356_23325at 5231.444 kb on - strandat 5231.538 kb on + strand, within AO356_23330at 5231.541 kb on + strand, within AO356_23330at 5231.541 kb on + strand, within AO356_23330at 5231.542 kb on - strand, within AO356_23330at 5231.542 kb on - strand, within AO356_23330at 5231.542 kb on - strand, within AO356_23330at 5231.580 kb on + strand, within AO356_23330at 5231.580 kb on + strand, within AO356_23330at 5231.581 kb on - strand, within AO356_23330at 5231.581 kb on - strand, within AO356_23330at 5231.581 kb on - strand, within AO356_23330at 5231.586 kb on + strand, within AO356_23330at 5231.586 kb on + strand, within AO356_23330at 5231.587 kb on - strand, within AO356_23330at 5231.587 kb on - strand, within AO356_23330at 5231.587 kb on - strand, within AO356_23330at 5231.590 kb on - strand, within AO356_23330at 5231.590 kb on - strand, within AO356_23330at 5231.590 kb on - strand, within AO356_23330at 5231.590 kb on - strand, within AO356_23330at 5231.590 kb on - strand, within AO356_23330at 5231.590 kb on - strand, within AO356_23330at 5231.635 kb on - strand, within AO356_23330at 5231.635 kb on - strand, within AO356_23330at 5231.991 kb on + strand, within AO356_23330at 5231.992 kb on - strand, within AO356_23330at 5231.992 kb on - strand, within AO356_23330at 5232.033 kb on + strand, within AO356_23330at 5232.033 kb on + strand, within AO356_23330at 5232.081 kb on - strand, within AO356_23330at 5232.165 kb on + strand, within AO356_23330at 5232.166 kb on - strand, within AO356_23330at 5232.166 kb on - strand, within AO356_23330at 5232.207 kb on + strand, within AO356_23330at 5232.207 kb on + strand, within AO356_23330at 5232.207 kb on + strand, within AO356_23330at 5232.207 kb on + strand, within AO356_23330at 5232.207 kb on + strand, within AO356_23330at 5232.208 kb on - strand, within AO356_23330at 5232.208 kb on - strand, within AO356_23330at 5232.208 kb on - strand, within AO356_23330at 5232.348 kb on + strand, within AO356_23330at 5232.348 kb on + strand, within AO356_23330at 5232.348 kb on + strand, within AO356_23330at 5232.487 kb on + strandat 5232.488 kb on - strandat 5232.513 kb on + strandat 5232.545 kb on - strandat 5232.583 kb on + strandat 5232.583 kb on + strandat 5232.584 kb on - strandat 5232.584 kb on - strandat 5232.585 kb on + strandat 5232.585 kb on + strandat 5232.585 kb on + strandat 5232.586 kb on - strandat 5232.586 kb on - strandat 5232.586 kb on - strandat 5232.586 kb on - strandat 5232.586 kb on - strandat 5232.655 kb on + strandat 5232.655 kb on + strandat 5232.655 kb on + strandat 5232.713 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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5,230,684 + -0.3
5,230,684 + +0.0
5,230,684 + +2.1
5,230,685 - +0.1
5,230,685 - +0.0
5,230,685 - +0.3
5,230,709 - +0.7
5,230,924 + AO356_23325 0.37 -0.4
5,230,924 + AO356_23325 0.37 -0.4
5,230,924 + AO356_23325 0.37 +0.1
5,230,925 - AO356_23325 0.37 -0.2
5,230,925 - AO356_23325 0.37 -1.1
5,230,925 - AO356_23325 0.37 -0.4
5,230,925 - AO356_23325 0.37 -0.4
5,231,444 - +0.5
5,231,538 + AO356_23330 0.10 -0.0
5,231,541 + AO356_23330 0.10 +0.2
5,231,541 + AO356_23330 0.10 +0.6
5,231,542 - AO356_23330 0.11 -0.4
5,231,542 - AO356_23330 0.11 -0.0
5,231,542 - AO356_23330 0.11 +0.7
5,231,580 + AO356_23330 0.14 +1.0
5,231,580 + AO356_23330 0.14 +0.1
5,231,581 - AO356_23330 0.14 +1.4
5,231,581 - AO356_23330 0.14 +0.3
5,231,581 - AO356_23330 0.14 +0.5
5,231,586 + AO356_23330 0.15 -0.4
5,231,586 + AO356_23330 0.15 -0.3
5,231,587 - AO356_23330 0.15 +0.8
5,231,587 - AO356_23330 0.15 +0.1
5,231,587 - AO356_23330 0.15 -0.8
5,231,590 - AO356_23330 0.15 +0.4
5,231,590 - AO356_23330 0.15 -0.4
5,231,590 - AO356_23330 0.15 -0.4
5,231,590 - AO356_23330 0.15 +0.6
5,231,590 - AO356_23330 0.15 +0.4
5,231,590 - AO356_23330 0.15 -0.1
5,231,635 - AO356_23330 0.19 +0.0
5,231,635 - AO356_23330 0.19 +0.1
5,231,991 + AO356_23330 0.53 -0.1
5,231,992 - AO356_23330 0.53 +0.1
5,231,992 - AO356_23330 0.53 +0.1
5,232,033 + AO356_23330 0.57 +0.4
5,232,033 + AO356_23330 0.57 -0.8
5,232,081 - AO356_23330 0.61 +0.1
5,232,165 + AO356_23330 0.69 -0.2
5,232,166 - AO356_23330 0.69 -0.3
5,232,166 - AO356_23330 0.69 -1.1
5,232,207 + AO356_23330 0.73 +0.1
5,232,207 + AO356_23330 0.73 +1.4
5,232,207 + AO356_23330 0.73 -0.2
5,232,207 + AO356_23330 0.73 -0.5
5,232,207 + AO356_23330 0.73 +0.1
5,232,208 - AO356_23330 0.73 -0.6
5,232,208 - AO356_23330 0.73 +0.4
5,232,208 - AO356_23330 0.73 +0.3
5,232,348 + AO356_23330 0.86 +0.1
5,232,348 + AO356_23330 0.86 +0.2
5,232,348 + AO356_23330 0.86 -1.0
5,232,487 + +0.9
5,232,488 - +0.1
5,232,513 + +0.4
5,232,545 - +0.5
5,232,583 + +0.3
5,232,583 + +0.2
5,232,584 - +0.2
5,232,584 - -1.2
5,232,585 + +0.1
5,232,585 + +0.5
5,232,585 + +0.7
5,232,586 - +0.9
5,232,586 - -1.2
5,232,586 - +0.8
5,232,586 - +0.3
5,232,586 - +0.9
5,232,655 + -0.0
5,232,655 + -1.0
5,232,655 + +1.5
5,232,713 - -0.6

Or see this region's nucleotide sequence