Experiment: Gly-Glu (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_12220 and AO356_12225 are separated by 82 nucleotides AO356_12225 and AO356_12230 are separated by 1 nucleotides
AO356_12220: AO356_12220 - type IV secretion protein Rhs, at 2,782,446 to 2,786,459
_12220
AO356_12225: AO356_12225 - hypothetical protein, at 2,786,542 to 2,786,820
_12225
AO356_12230: AO356_12230 - type IV secretion protein Rhs, at 2,786,822 to 2,791,261
_12230
Position (kb)
2786
2787 Strain fitness (log2 ratio)
-1
0
1
2 at 2786.023 kb on + strand, within AO356_12220 at 2786.024 kb on - strand, within AO356_12220 at 2786.202 kb on + strand at 2786.379 kb on + strand at 2786.379 kb on + strand at 2786.379 kb on + strand at 2786.379 kb on + strand at 2786.380 kb on - strand at 2786.380 kb on - strand at 2786.380 kb on - strand at 2786.380 kb on - strand at 2786.380 kb on - strand at 2786.380 kb on - strand at 2786.824 kb on - strand at 2786.892 kb on + strand at 2786.893 kb on - strand at 2786.899 kb on + strand at 2786.937 kb on + strand at 2786.937 kb on + strand at 2786.937 kb on + strand at 2786.937 kb on + strand at 2786.937 kb on + strand at 2786.937 kb on + strand at 2786.938 kb on - strand at 2786.938 kb on - strand at 2786.938 kb on - strand at 2786.938 kb on - strand at 2786.938 kb on - strand at 2786.938 kb on - strand at 2786.938 kb on - strand at 2786.938 kb on - strand at 2786.938 kb on - strand at 2787.111 kb on + strand at 2787.112 kb on - strand at 2787.138 kb on + strand at 2787.138 kb on + strand at 2787.213 kb on + strand at 2787.214 kb on - strand at 2787.214 kb on - strand at 2787.303 kb on + strand, within AO356_12230 at 2787.309 kb on + strand, within AO356_12230 at 2787.310 kb on - strand, within AO356_12230 at 2787.393 kb on + strand, within AO356_12230 at 2787.393 kb on + strand, within AO356_12230 at 2787.393 kb on + strand, within AO356_12230 at 2787.393 kb on + strand, within AO356_12230 at 2787.393 kb on + strand, within AO356_12230 at 2787.393 kb on + strand, within AO356_12230 at 2787.394 kb on - strand, within AO356_12230 at 2787.394 kb on - strand, within AO356_12230 at 2787.394 kb on - strand, within AO356_12230 at 2787.394 kb on - strand, within AO356_12230 at 2787.420 kb on + strand, within AO356_12230 at 2787.421 kb on - strand, within AO356_12230 at 2787.456 kb on + strand, within AO356_12230 at 2787.456 kb on + strand, within AO356_12230 at 2787.456 kb on + strand, within AO356_12230 at 2787.456 kb on + strand, within AO356_12230 at 2787.460 kb on - strand, within AO356_12230 at 2787.460 kb on - strand, within AO356_12230 at 2787.460 kb on - strand, within AO356_12230 at 2787.460 kb on - strand, within AO356_12230 at 2787.460 kb on - strand, within AO356_12230 at 2787.573 kb on + strand, within AO356_12230 at 2787.573 kb on + strand, within AO356_12230 at 2787.573 kb on + strand, within AO356_12230 at 2787.573 kb on + strand, within AO356_12230 at 2787.574 kb on - strand, within AO356_12230 at 2787.574 kb on - strand, within AO356_12230 at 2787.574 kb on - strand, within AO356_12230 at 2787.642 kb on + strand, within AO356_12230 at 2787.643 kb on - strand, within AO356_12230 at 2787.643 kb on - strand, within AO356_12230 at 2787.643 kb on - strand, within AO356_12230 at 2787.643 kb on - strand, within AO356_12230 at 2787.643 kb on - strand, within AO356_12230 at 2787.648 kb on + strand, within AO356_12230 at 2787.648 kb on + strand, within AO356_12230 at 2787.648 kb on + strand, within AO356_12230 at 2787.648 kb on + strand, within AO356_12230 at 2787.648 kb on + strand, within AO356_12230 at 2787.648 kb on + strand, within AO356_12230 at 2787.649 kb on - strand, within AO356_12230 at 2787.649 kb on - strand, within AO356_12230 at 2787.742 kb on - strand, within AO356_12230 at 2787.742 kb on - strand, within AO356_12230 at 2787.777 kb on + strand, within AO356_12230 at 2787.778 kb on - strand, within AO356_12230 at 2787.778 kb on - strand, within AO356_12230 at 2787.778 kb on - strand, within AO356_12230 at 2787.789 kb on - strand, within AO356_12230
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (N) remove 2,786,023 + AO356_12220 0.89 +0.5 2,786,024 - AO356_12220 0.89 +0.5 2,786,202 + +0.7 2,786,379 + -0.4 2,786,379 + +0.6 2,786,379 + +1.2 2,786,379 + -0.0 2,786,380 - +0.3 2,786,380 - -0.3 2,786,380 - +0.3 2,786,380 - -0.0 2,786,380 - +0.2 2,786,380 - +0.2 2,786,824 - +0.7 2,786,892 + +0.9 2,786,893 - +1.1 2,786,899 + +0.9 2,786,937 + +0.9 2,786,937 + +0.1 2,786,937 + -0.1 2,786,937 + -0.7 2,786,937 + -0.3 2,786,937 + +0.9 2,786,938 - +0.7 2,786,938 - +0.4 2,786,938 - -0.2 2,786,938 - -1.5 2,786,938 - +0.1 2,786,938 - +0.8 2,786,938 - -1.0 2,786,938 - -0.7 2,786,938 - -1.3 2,787,111 + +0.5 2,787,112 - -0.2 2,787,138 + +0.5 2,787,138 + +0.7 2,787,213 + -0.5 2,787,214 - +1.2 2,787,214 - +0.4 2,787,303 + AO356_12230 0.11 +0.1 2,787,309 + AO356_12230 0.11 +1.0 2,787,310 - AO356_12230 0.11 -0.5 2,787,393 + AO356_12230 0.13 -0.1 2,787,393 + AO356_12230 0.13 +0.3 2,787,393 + AO356_12230 0.13 +0.5 2,787,393 + AO356_12230 0.13 -0.8 2,787,393 + AO356_12230 0.13 -0.9 2,787,393 + AO356_12230 0.13 +0.5 2,787,394 - AO356_12230 0.13 +0.4 2,787,394 - AO356_12230 0.13 -0.3 2,787,394 - AO356_12230 0.13 -0.1 2,787,394 - AO356_12230 0.13 +1.7 2,787,420 + AO356_12230 0.13 +0.6 2,787,421 - AO356_12230 0.13 -0.3 2,787,456 + AO356_12230 0.14 +1.9 2,787,456 + AO356_12230 0.14 +1.0 2,787,456 + AO356_12230 0.14 +0.2 2,787,456 + AO356_12230 0.14 +0.7 2,787,460 - AO356_12230 0.14 -0.4 2,787,460 - AO356_12230 0.14 +0.6 2,787,460 - AO356_12230 0.14 +0.5 2,787,460 - AO356_12230 0.14 +1.1 2,787,460 - AO356_12230 0.14 -0.6 2,787,573 + AO356_12230 0.17 +0.7 2,787,573 + AO356_12230 0.17 +1.2 2,787,573 + AO356_12230 0.17 -0.1 2,787,573 + AO356_12230 0.17 -0.4 2,787,574 - AO356_12230 0.17 +0.5 2,787,574 - AO356_12230 0.17 +0.1 2,787,574 - AO356_12230 0.17 +1.7 2,787,642 + AO356_12230 0.18 +1.0 2,787,643 - AO356_12230 0.18 -0.4 2,787,643 - AO356_12230 0.18 +1.2 2,787,643 - AO356_12230 0.18 +0.6 2,787,643 - AO356_12230 0.18 +0.8 2,787,643 - AO356_12230 0.18 -0.2 2,787,648 + AO356_12230 0.19 +0.6 2,787,648 + AO356_12230 0.19 +0.4 2,787,648 + AO356_12230 0.19 -0.3 2,787,648 + AO356_12230 0.19 +0.3 2,787,648 + AO356_12230 0.19 -0.2 2,787,648 + AO356_12230 0.19 -0.3 2,787,649 - AO356_12230 0.19 +1.0 2,787,649 - AO356_12230 0.19 -0.0 2,787,742 - AO356_12230 0.21 +0.2 2,787,742 - AO356_12230 0.21 +0.6 2,787,777 + AO356_12230 0.22 +0.9 2,787,778 - AO356_12230 0.22 +0.5 2,787,778 - AO356_12230 0.22 +0.2 2,787,778 - AO356_12230 0.22 -0.4 2,787,789 - AO356_12230 0.22 +0.2
Or see this region's nucleotide sequence