Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09705

Experiment: Gly-Glu (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_09700 and AO356_09705 are separated by 328 nucleotidesAO356_09705 and AO356_09710 are separated by 120 nucleotidesAO356_09710 and AO356_09715 are separated by 190 nucleotides AO356_09700: AO356_09700 - tRNA s(4)U8 sulfurtransferase, at 2,201,884 to 2,203,338 _09700 AO356_09705: AO356_09705 - glutamine synthetase, at 2,203,667 to 2,205,073 _09705 AO356_09710: AO356_09710 - chorismate mutase, at 2,205,194 to 2,205,757 _09710 AO356_09715: AO356_09715 - hypothetical protein, at 2,205,948 to 2,206,466 _09715 Position (kb) 2203 2204 2205 2206Strain fitness (log2 ratio) -2 -1 0 1 2at 2203.384 kb on - strandat 2203.384 kb on - strandat 2203.384 kb on - strandat 2203.386 kb on - strandat 2203.484 kb on + strandat 2203.507 kb on - strandat 2203.515 kb on - strandat 2203.515 kb on - strandat 2203.515 kb on - strandat 2203.515 kb on - strandat 2203.515 kb on - strandat 2203.515 kb on - strandat 2203.600 kb on + strandat 2203.600 kb on + strandat 2203.600 kb on + strandat 2203.600 kb on + strandat 2203.621 kb on + strandat 2203.621 kb on + strandat 2203.621 kb on + strandat 2203.625 kb on + strandat 2203.625 kb on + strandat 2203.625 kb on + strandat 2205.104 kb on + strandat 2205.104 kb on + strandat 2205.148 kb on + strandat 2205.148 kb on + strandat 2205.176 kb on + strandat 2205.176 kb on + strandat 2205.176 kb on + strandat 2205.177 kb on - strandat 2205.177 kb on - strandat 2205.346 kb on + strand, within AO356_09710at 2205.346 kb on + strand, within AO356_09710at 2205.346 kb on + strand, within AO356_09710at 2205.347 kb on - strand, within AO356_09710at 2205.347 kb on - strand, within AO356_09710at 2205.347 kb on - strand, within AO356_09710at 2205.347 kb on - strand, within AO356_09710at 2205.347 kb on - strand, within AO356_09710at 2205.428 kb on + strand, within AO356_09710at 2205.428 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.475 kb on - strand, within AO356_09710at 2205.475 kb on - strand, within AO356_09710at 2205.475 kb on - strand, within AO356_09710at 2205.475 kb on - strand, within AO356_09710at 2205.475 kb on - strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.739 kb on + strandat 2205.739 kb on + strandat 2205.739 kb on + strandat 2205.739 kb on + strandat 2205.739 kb on + strandat 2205.740 kb on - strandat 2205.740 kb on - strandat 2205.740 kb on - strandat 2205.740 kb on - strandat 2205.740 kb on - strandat 2205.740 kb on - strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.910 kb on - strandat 2205.910 kb on - strandat 2205.910 kb on - strandat 2205.947 kb on + strandat 2205.948 kb on - strandat 2206.011 kb on + strand, within AO356_09715at 2206.011 kb on + strand, within AO356_09715at 2206.011 kb on + strand, within AO356_09715at 2206.011 kb on + strand, within AO356_09715at 2206.011 kb on + strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.045 kb on - strand, within AO356_09715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
remove
2,203,384 - -0.6
2,203,384 - +0.3
2,203,384 - -0.8
2,203,386 - +0.6
2,203,484 + -0.5
2,203,507 - +1.1
2,203,515 - -0.9
2,203,515 - +0.4
2,203,515 - +0.3
2,203,515 - -0.0
2,203,515 - -0.3
2,203,515 - -0.5
2,203,600 + +0.2
2,203,600 + -0.9
2,203,600 + +0.3
2,203,600 + +0.7
2,203,621 + -0.6
2,203,621 + +0.9
2,203,621 + +1.2
2,203,625 + -0.7
2,203,625 + +1.0
2,203,625 + -0.7
2,205,104 + -0.4
2,205,104 + -1.9
2,205,148 + +0.2
2,205,148 + -0.6
2,205,176 + +1.6
2,205,176 + +0.3
2,205,176 + -0.7
2,205,177 - -0.4
2,205,177 - -0.1
2,205,346 + AO356_09710 0.27 +0.3
2,205,346 + AO356_09710 0.27 +0.6
2,205,346 + AO356_09710 0.27 +0.1
2,205,347 - AO356_09710 0.27 -0.7
2,205,347 - AO356_09710 0.27 -0.4
2,205,347 - AO356_09710 0.27 +1.0
2,205,347 - AO356_09710 0.27 -0.2
2,205,347 - AO356_09710 0.27 +0.3
2,205,428 + AO356_09710 0.41 -0.7
2,205,428 + AO356_09710 0.41 +0.2
2,205,474 + AO356_09710 0.50 +0.4
2,205,474 + AO356_09710 0.50 +2.4
2,205,474 + AO356_09710 0.50 +0.6
2,205,474 + AO356_09710 0.50 -0.2
2,205,474 + AO356_09710 0.50 +0.1
2,205,474 + AO356_09710 0.50 +1.0
2,205,474 + AO356_09710 0.50 -0.1
2,205,475 - AO356_09710 0.50 -0.0
2,205,475 - AO356_09710 0.50 +0.5
2,205,475 - AO356_09710 0.50 +0.4
2,205,475 - AO356_09710 0.50 -1.2
2,205,475 - AO356_09710 0.50 +0.1
2,205,497 + AO356_09710 0.54 +0.3
2,205,497 + AO356_09710 0.54 -1.2
2,205,497 + AO356_09710 0.54 -0.3
2,205,497 + AO356_09710 0.54 -0.4
2,205,497 + AO356_09710 0.54 +1.1
2,205,497 + AO356_09710 0.54 -0.3
2,205,497 + AO356_09710 0.54 +0.4
2,205,497 + AO356_09710 0.54 -1.2
2,205,498 - AO356_09710 0.54 -0.1
2,205,498 - AO356_09710 0.54 -0.2
2,205,498 - AO356_09710 0.54 -0.9
2,205,498 - AO356_09710 0.54 +2.3
2,205,498 - AO356_09710 0.54 -0.1
2,205,498 - AO356_09710 0.54 +0.0
2,205,498 - AO356_09710 0.54 +0.6
2,205,739 + +0.1
2,205,739 + +0.2
2,205,739 + +1.0
2,205,739 + +0.3
2,205,739 + +0.3
2,205,740 - -0.2
2,205,740 - -0.6
2,205,740 - +1.0
2,205,740 - +0.5
2,205,740 - +0.4
2,205,740 - +0.8
2,205,909 + +2.1
2,205,909 + -0.6
2,205,909 + +1.0
2,205,909 + +0.8
2,205,909 + +0.4
2,205,909 + +0.2
2,205,909 + +0.6
2,205,909 + +0.2
2,205,909 + -0.4
2,205,909 + +0.8
2,205,909 + +0.1
2,205,910 - +0.3
2,205,910 - -0.6
2,205,910 - +0.6
2,205,947 + -0.3
2,205,948 - +1.1
2,206,011 + AO356_09715 0.12 -0.9
2,206,011 + AO356_09715 0.12 -1.5
2,206,011 + AO356_09715 0.12 +0.2
2,206,011 + AO356_09715 0.12 -1.3
2,206,011 + AO356_09715 0.12 +1.1
2,206,012 - AO356_09715 0.12 +2.3
2,206,012 - AO356_09715 0.12 +1.7
2,206,012 - AO356_09715 0.12 +0.9
2,206,012 - AO356_09715 0.12 -0.4
2,206,012 - AO356_09715 0.12 +0.4
2,206,012 - AO356_09715 0.12 +0.7
2,206,012 - AO356_09715 0.12 +2.0
2,206,017 + AO356_09715 0.13 +0.2
2,206,017 + AO356_09715 0.13 +0.5
2,206,017 + AO356_09715 0.13 -0.0
2,206,017 + AO356_09715 0.13 -0.1
2,206,017 + AO356_09715 0.13 +1.2
2,206,017 + AO356_09715 0.13 -0.3
2,206,017 + AO356_09715 0.13 +0.3
2,206,017 + AO356_09715 0.13 +0.1
2,206,017 + AO356_09715 0.13 +1.0
2,206,017 + AO356_09715 0.13 +1.1
2,206,018 - AO356_09715 0.13 -1.5
2,206,018 - AO356_09715 0.13 +0.6
2,206,018 - AO356_09715 0.13 -0.0
2,206,018 - AO356_09715 0.13 +0.3
2,206,018 - AO356_09715 0.13 +0.9
2,206,018 - AO356_09715 0.13 -0.2
2,206,018 - AO356_09715 0.13 +0.5
2,206,018 - AO356_09715 0.13 -0.6
2,206,045 - AO356_09715 0.19 -0.1

Or see this region's nucleotide sequence